Eddy lab :: tRNAscan-SE search server

tRNAscan-SE 1.21

User Manual for command-line UNIX version of program

If you would like to run tRNAscan-SE locally, you can get the UNIX source code (compressed tar file).

Analyzing tRNAs in a published genome? See our own tRNAscan-SE analyses of completed genomes in the Genomic tRNA Database.

Search Mode:

Source:

Format:

Raw Sequence
Sequence name (optional): (no spaces)

Other (FASTA, GenBank, EMBL, GCG, IG)

Paste your query sequence(s) here:

(The web-server may experience problems if submitted queries total more than 100K nucleotides at any one time)

or send a file:

Show results in this browser.
Receive results by e-mail instead:

Extended Options:

Disable pseudo gene checking Show origin of first-pass hits

Display results in ACeDB format Show codons instead of tRNA anticodons

Show false positives from tRNAscan/EufindtRNA

Show primary and secondary structure components to Cove scores

Genetic Code for tRNA Isotype Prediction:

Default cut-off values should only be changed for execptional conditions

Cove score cutoff:

EufindtRNA search parameters:
Intermediate score cutoff:

tRNA cartoon by
Tod Klingler

Paste your query sequence(s) here:
(The web-server may experience problems if submitted queries total more than 100K nucleotides at any one time)

or send a file:

Disable pseudo gene checking	Show origin of first-pass hits
Display results in ACeDB format	Show codons instead of tRNA anticodons
Show false positives from tRNAscan/EufindtRNA
Show primary and secondary structure components to Cove scores
Genetic Code for tRNA Isotype Prediction:
Default cut-off values should only be changed for execptional conditions
Cove score cutoff:
EufindtRNA search parameters:
	Intermediate score cutoff: