# STOCKHOLM 1.0

#=GS A.ambivalens DE converted from brown dataset ct file

A.ambivalens		GAGGAAAGUCCCGCCUCCAGAUCAAGGGAAGUCCCGCGA
#=GR A.ambivalens SS  .....>>>.>>>>>AAAA.>>>>>.>>>>>>>>>>....

A.ambivalens	GGGACAAGGGUAGUACCCUUGGCAACUGCACAGAAAACUU
#=GR A.ambivalens SS  <<<<<>>>>>.....<<<<<>>...>>>>...........

A.ambivalens	ACCCCUAAAUAUUCAAUGAGGAUUUGAUUCGACUCUUACC
#=GR A.ambivalens SS  .>>>>>>>>>>>................>>...>>>>>>>

A.ambivalens	UUGGCGACAAGGUAAGAUAGAUGAAGAGAAUAUUUAGGGG
#=GR A.ambivalens SS  >>>....<<<<<<<<<<..<<........<<<<<<<<<<<

A.ambivalens	UUGAAACGCAGUCCUUCCCGGAGCAAGUAGGGGGGUCAAU
#=GR A.ambivalens SS  .......<<<<.<<<<<<<aaaa...>>.>>>>>>>>..>

A.ambivalens	GAGAAUGAUCUGAAGACCUCCCUUGACGCAUAGUCGAAUC
#=GR A.ambivalens SS  >>>..<<<<<<<<<<<<<<<<<...<<.............

A.ambivalens	CCCCAAAUACAGAAGCGGGCUUA
#=GR A.ambivalens SS	..............<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS A.brierleyi DE converted from brown dataset ct file

A.brierleyi		GAGGAAAGUCCCGCCUCCUGGCCUAAAGGAGUCUCUAUA
#=GR A.brierleyi SS  .....>>>.>>>>>AAAA.>>>>>.>>>>>>>>>>....

A.brierleyi	GAGACAAGGGCAACACCCUUGGCAACUAUACAGAAACAAG
#=GR A.brierleyi SS  <<<<<>>>>>.....<<<<<>>...>>>>...........

A.brierleyi	UACCUUGAAAGCUACAUGUGAAAAUGAUUGUGCCCCUUCC
#=GR A.brierleyi SS  ..>>>>>>>>>>>...............>>.....>>>>>

A.brierleyi	UCUGGUAACGGAGGAAGAAACAUGAGAGUAGCUUUCAAGG
#=GR A.brierleyi SS  >>>>....<<<<<<<<<...<<.......<<<<<<<<<<<

A.brierleyi	AUGAAAAGAUAGACCUCCUAGGAGCAAGUAGAGGGAAAGA
#=GR A.brierleyi SS  ........<<<<.<<<<<<<aaaa...>>.>>>>>>>>..

A.brierleyi	UGAGACUAGGCCCGAUUUCCCUCUAGGACGCAUAGCCAAA
#=GR A.brierleyi SS  .>>>...<<<<<<<<<<<<<<<<....<<...........

A.brierleyi	UCCCCCAACCAUUACAAAAGCGGGCUUA
#=GR A.brierleyi SS	...................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS A.fulgidus DE converted from brown dataset ct file

A.fulgidus		CGGCGGUGGGCGGCUGACCGAAAGGAGGAAAGUCCCCCC
#=GR A.fulgidus SS  >>>>>>>>AAAAAA...>>....<<....>>>.>>>>>>

A.fulgidus	ACCCGCUGUGGCGGAAGGCCCCUGAGAAGGGGCGGAGGAG
#=GR A.fulgidus SS  >>>>.....>>>>>...>>>>>>....<<<<<<>>>>>>>

A.fulgidus	GAACAGAAACGAGACCGGUGCGGGGAAAUGCGAUGAUUCC
#=GR A.fulgidus SS  >>............>>>>>>>>>>>>...........>>>

A.fulgidus	GCAAGGAUGAGGUCACCCGCUCCGGAUGAAACGGCCUCCU
#=GR A.fulgidus SS  ....<<<.....<<.<<<<<<<<<<........<<<<<<<

A.fulgidus	CCCCGCCGGGUGCAACGCGUAAGCGGCUCAGUCUAAUGCC
#=GR A.fulgidus SS  <<<<<<<<<<<<...>>>....<<<............aaa

A.fulgidus	GCCGGAACAGAAGGGGGCUUACUACCGCCA
#=GR A.fulgidus SS	aaa.........<<<<<<<<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS A.pernix DE converted from brown dataset ct file

A.pernix		GGCGGCGCCGGCCGGCGGCCCACGGCCCCCCAGCCAGGG
#=GR A.pernix SS  >>>>>>>>>>>>>BBBBBB...>>>>>>>>>.....<<<

A.pernix	GGGCUGAGGAAACUCCGCCCUCCCCGCGGCGGCCGGGCCC
#=GR A.pernix SS  <<<<<<....>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>

A.pernix	CGCAAGGGGCACGGGUGAAACCCGUGGCAACGGCACAGAA
#=GR A.pernix SS  >....<<<<<>>>>>>...<<<<<<>>...>>>>......

A.pernix	ACGACACGGCCCCGGGGCGUGUCGAGGACGCGGCUAGGCC
#=GR A.pernix SS  ......>>>>>>>>>>>............>>>>.....>>

A.pernix	GCCCUGGCAACAGGGCGGCAGCAAACCGCAGAGGAACCCC
#=GR A.pernix SS  >>>>>>....<<<<<<<<.......<<<<.......<<<<

A.pernix	GGGGAUGCGGUGAAACGGCCGCCCCCGGCGGAGCAAGGCC
#=GR A.pernix SS  <<<<<..<<........<<<<.<<<<<<<aaaa...>>>>

A.pernix	CCCGGGCGGUGAGGGCCGCGCGAAGCCCGGGGGGAGACCG
#=GR A.pernix SS  >>>>>>>..>>>>.<<<<<<<<<<<<<<<<<<<....<<.

A.pernix	CUUAGCCCAAUGCCGCCGAAGUACAGAAGGCGGGUUAUGG
#=GR A.pernix SS  ...........bbbbbb...........<<<<<<<<..<<

A.pernix	CCGGCGCCGCC
#=GR A.pernix SS	<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS E1B DE converted from brown dataset ct file

E1B		GAGGAAAGUCCAGCCACCACUGGACACACAGACAUUCCC
#=GR E1B SS  .....>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>>..

E1B	CCAAGGAUGUAGGGCGAGAGCUCUGGCUCUGGCACAGAAA
#=GR E1B SS  ....<<<<<<>>>>>....<<<<<>>...>>>>.......

E1B	CGAGACCGCGCCGCGUAAAGCGAUGAUGCCGCAAGGCUGA
#=GR E1B SS  .....>>>>>>>>>>>...........>>>....<<<...

E1B	GGUCGCGCGGGAGGCGGAUGAAACGGCGAAACCCUGUGGG
#=GR E1B SS  ....<<<<<<<..<<<<........<<<<..<<<<<<<aa

E1B	UGCAAGCCAAAAUAGAGCUGAGAACGCGGACGUCCAGCCG
#=GR E1B SS  aa...>>>>.....>>>>>.......>>>..<<<<<<<<<

E1B	AGCUCGGGUAUGGCGCUAAGCUGAAUGCCGUCAAAGAAAC
#=GR E1B SS  <<<<<.....<<<<..........................

E1B	AAAAGCUGGCUUA
#=GR E1B SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS ERE DE converted from brown dataset ct file

ERE		AGCCGAAGGGCAGCUACCGGUUUCUAUAGAUUUAAUGUC
#=GR ERE SS  >>>>>>>>BBBBBB...>>>>>>>>>>>>>>.....<<<

ERE	UGUAGUUAAACUGAGGAAACUCCACCCAUCAUGCAGAGCC
#=GR ERE SS  <<<<<..<<<<<<....>>>.>>>>>AAAA.>>>>>..>>

ERE	GUGGUGCCGUAGCAUCAGCUGAGAGGCUGGACCCUGGAGC
#=GR ERE SS  >>>>>>>....<<<<>>>>>....<<<<<>>...>>>>..

ERE	AGAAACGACACGUCUCCUGGUGGAUGAUAAUGAAGCUUCA
#=GR ERE SS  ..........>>>>>>>>>>>>............>>>>>.

ERE	CCCUCAAGGAGCAGACUGACAUCAGGAGGACCGGUGAAAC
#=GR ERE SS  .......<<<<<.......<<<<<<<<<<..<<.......

ERE	GGCCAUUCCACGGGAUGCAAGGACAAAUGCUGCCUGUGAU
#=GR ERE SS  .<<<<.<<<<<<<aaaa...>>>>.....>>>>>...>>>

ERE	UACUGUAGGAGGCAGAGGUAGUCCGCCCAGAUGAAUGCUG
#=GR ERE SS  ..<<<<<<<<<<<<<.....<<<<............bbbb

ERE	CCGAACAGAAGGUGGGUUACUCUCGGCA
#=GR ERE SS	bb........<<<<<<<<.<<.<<<<<<

//
# STOCKHOLM 1.0

#=GS H.cutirubrum DE converted from brown dataset ct file

H.cutirubrum		GGCAGAGGGAGCCCGGCUGCCCGUGCCGUGAGGCAUGAG
#=GR H.cutirubrum SS  >>>>>>>>>>>BBBBBB....>>>>>>....<<<<<<..

H.cutirubrum	GAAAGUCCCCCCACCCGUUCGGGCACGCGGCCGGACACAC
#=GR H.cutirubrum SS  ..>>>.>>>>>AAAA.>>>>>>>>.>>>>>>>>>>>....

H.cutirubrum	GUCCGGGGCGGGAGACCGCCGGCACUGGAACAGACACGAC
#=GR H.cutirubrum SS  <<<<<<>>>>>....<<<<<>>...>>>>...........

H.cutirubrum	ACGUCCCUCCCACACCGAUGAGGCGCGCGACCCACCCCGA
#=GR H.cutirubrum SS  .>>>>>>>>>>>.........>>>>.>>...>>..>>>..

H.cutirubrum	AAGGGACGGCAGUUAACCCGCCGAGGGCGUGGCCGCCACA
#=GR H.cutirubrum SS  ..<<<..<<..<<.....<<<<.......>>>>>>>>...

H.cutirubrum	CCGGCGGCCACGGACCGGUGAUCGACACCCCAAUGGGAGG
#=GR H.cutirubrum SS  ..<<<<<<<<......>>>>.....<<<<....<<<<<<<

H.cutirubrum	GGAGCGAUGGAACGGCCAACCCCCGCCGGUGCAAGUCCAC
#=GR H.cutirubrum SS  <..<<<........<<<<..<<<<<<<aaaa...>>>>>>

H.cutirubrum	GCGCGCAUGGUAGCCCGAACCACCCGAAAGGGGCCGCGUG
#=GR H.cutirubrum SS  >>>.........<<<<<<<<..>>>....<<<..<<<<<<

H.cutirubrum	GACGCUCAGCCGAAUGCCGGGCCGAACAGAAGGGGGCUUA
#=GR H.cutirubrum SS  <<<............bbbbbb..........<<<<<<<<.

H.cutirubrum	CUCCCCUCAGCUCGUA
#=GR H.cutirubrum SS	<<.<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS H.morrhuae DE converted from brown dataset ct file

H.morrhuae		GGCAGAGAGAGCCCGGCCACCGCGGCGUACCGACAGGCA
#=GR H.morrhuae SS  >>>>>>>>>>>BBBBBB...>>>>>>>>>>>....>>>>

H.morrhuae	CACACGUGCCAGCGGGUACGCACGCGAGGAAAGUCCCCCC
#=GR H.morrhuae SS  >....<<<<<....<<<<<<<.<<<<....>>>.>>>>>>

H.morrhuae	ACCGCCGGGCAGGUGACCGGGGAAACCCCGGGACGGGAGA
#=GR H.morrhuae SS  >>>.AAAAAA.>>>>>>>>>>>...<<<<<<>>>>>....

H.morrhuae	CCGUCGGCGCUGGAACAGCAACGAGACCCCUCCACCCGAC
#=GR H.morrhuae SS  <<<<<>>...>>>>............>>>>>>>>>>>...

H.morrhuae	CGAUGAGGCGCGGGCGGUGGCAUCGCCACCGUCUCGGCGC
#=GR H.morrhuae SS  ......>>>>.>>>>>>>>>>...<<<<<<<<<<..>>>>

H.morrhuae	GAGCGGCACGGGGUGCAUCGUGCGCCCCGAAGCGAGCGGG
#=GR H.morrhuae SS  >>>>>>>.>>>>>>>>>...<<<<<<<<<..>>>.>>>>>

H.morrhuae	CACCGCCCGCGACGCAGCCGCGAGCGUGCGAACCCGACGC
#=GR H.morrhuae SS  >...<<<<<<..<<<.<<<<<<<<<<<>>...>>>>..>>

H.morrhuae	AAAACGGCCACUGGUCGGACAAAGCAACGGGGAGCUAACC
#=GR H.morrhuae SS  ....>>>>>...<<<<<......<<..<<<<..<<.....

H.morrhuae	CGCCGAGGGAUGAGGGUGGAGAACGGAUGGAACGGCGAAU
#=GR H.morrhuae SS  <<<<.........<<<<<<<<..<<<........<<<<..

H.morrhuae	CCUCACCGGUGCAAGUCCACGCCACGCGGAUCGGCCGCAC
#=GR H.morrhuae SS  <<<<<<<<<<<...>>>>>>>>>..>>>>>...<<<<<..

H.morrhuae	GGUAGCCCGGCAGGGACGUGGACGCUCAGCCGAAUGCCGG
#=GR H.morrhuae SS  .....aaaaaa..<<.<<<<<<<............bbbbb

H.morrhuae	GGCGAACAGAAGGGGGCUUACUCCUCUCAGCCAUGU
#=GR H.morrhuae SS	b..........<<<<<<<<.<<.<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS H.volcanii DE converted from brown dataset ct file

H.volcanii		GGCAGAGAGAGCCCAGUUCCCGUGCCCGAGACGGGCAUG
#=GR H.volcanii SS  >>>>>>>>>>>BBBBBB...>>>>>>>>...<<<<<<<<

H.volcanii	AGGAAAGUCCCCCCACCGUCCGAACGGGUGACCGGGCGCA
#=GR H.volcanii SS  ....>>>.>>>>>AAAA.>>>>>>>.>>>>>>>>>>>...

H.volcanii	AGCCCGGAGUCGGAGACGGCUGGCGCUGGAACAGAAACGA
#=GR H.volcanii SS  .<<<<<<>>>>>....<<<<<>>...>>>>..........

H.volcanii	GACCGCUCGACCCGACCGAUGAUGCGCGCGCGACGGCUCC
#=GR H.volcanii SS  ..>>>>>>>>>>>.........>>>>>>.>>>>>>>>...

H.volcanii	GCCGUCGCCGGCGCGGCCGUCACGGCCGCGUGCGAACCGA
#=GR H.volcanii SS  <<<<<<<<<<>>>>>>>>>...<<<<<<<<<>>...>>..

H.volcanii	CCCGUAAGGGAAGGGAGCUAACCCGCAGAGGGAUGAGGUG
#=GR H.volcanii SS  >>>....<<<..<<..<<.....<<<<.......>>>>>>

H.volcanii	GCGUCGCCAUCUCCGACGGUCGAGAACGGAUGGAACGGCG
#=GR H.volcanii SS  >>...<<<<<<<<...<<<<<<<<..<<<........<<<

H.volcanii	AAUCCUCACCGGUGCAAGUCCGCGCCGCGAAGGGUAGUUC
#=GR H.volcanii SS  <..<<<<<<<aaaa...>>>>>>>>>..........<<<<

H.volcanii	GGACGGCGCGUCGGGUUCGCCCGUCGCGCCCUCGGGGGGC
#=GR H.volcanii SS  <<<.>>>>>>>>>>>....<<<<<<<<<<<>>>>>>>...

H.volcanii	UCGCCCCGAGAAGGCGCGGACGCUGAGCCGAAUGCUGGGA
#=GR H.volcanii SS  ...<<<<<<<..<<<<<<<<<............bbbbbb.

H.volcanii	CGAACAGAAGGGGGCUUACUCCUCUCAGCCGCUU
#=GR H.volcanii SS	.........<<<<<<<<.<<.<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS M.barkeri DE converted from brown dataset ct file

M.barkeri		CAUGCGAGAGAGGCUGGACGGCUGACGGGCCUUCGGGUC
#=GR M.barkeri SS  ...>>>>>>>>>>>>>>>>>>>...>>>>>>....<<<<

M.barkeri	UGAGGAAAGUCUCCCCACCGCUCCGGAUACACGAACAUCU
#=GR M.barkeri SS  <<....BBB.BBBBBAAAA..>>>>>>..>>>>>>>>>>>

M.barkeri	GUAAAGGAUGUCGGGCGAGAGCCCGGGCCCUGGCACAGAA
#=GR M.barkeri SS  .....<<<<<<>>>>>....<<<<<>>...>>>>......

M.barkeri	ACGAUAACCAUCCUCUGAAAAUGCGAUGAUGCGGAAGCUG
#=GR M.barkeri SS  .......>>>>>>>>>>>............>>....<<..

M.barkeri	AGAUCUCAGGGUAAAUGGAUGAAACGGCGAACCCUCGUGG
#=GR M.barkeri SS  .....<<<<<<<<..<<<........<<<<..<<<<<<<a

M.barkeri	GUGCAAGUUGGAAAUCGGGGAGAAGAGAAUUCCGGACUCU
#=GR M.barkeri SS  aaa...>>>...>>>>>>>....>>>>...<<<<<<<<<<

M.barkeri	CCCGGUUGUUUUUGGAAACGCAUAGCCGAAUGCCGUCACU
#=GR M.barkeri SS  <<<<<<<.........<<<............<<<<<<>>>

M.barkeri	GCAAGAGUCCUCAGGACCAUUUCCUCCACUGAUGGGUGAU
#=GR M.barkeri SS  >>>>>.>>>>...<<<<.>>>>>>>.>>>>....<<<<..

M.barkeri	AGGAAAUCUUUGCAGGAACAGAAGGGAGCUUACGUGCCUC
#=GR M.barkeri SS  <<<<<<<.<<<<<<<<.......bbbbbbbb.<<.<<<<<

M.barkeri	ACUCGCAUAAAC
#=GR M.barkeri SS	<<<<<<......

//
# STOCKHOLM 1.0

#=GS M.fervidus DE converted from brown dataset ct file

M.fervidus		GAGGAAAGUCCAGCCAUCACCCUAAACCCCGGUGCCGCA
#=GR M.fervidus SS  .....>>>.>>>>>>>>>........>>>>>>>>>>...

M.fervidus	AGGCAUCGGCCGAGAGGCCGGACCCUGGCGCAGAAACGAC
#=GR M.fervidus SS  .<<<<<>>>>>....<<<<<>>...>>>>...........

M.fervidus	ACGUCUCCCGAUGGAUGAUAAUGAGGCCCCAAUUAAAGGG
#=GR M.fervidus SS  .>>>>>>>>>>>>............>>>>>.......<<<

M.fervidus	GUUGAUUGACAUCGGGAGGAUCGGUGAAACGGCCAAUCCG
#=GR M.fervidus SS  <<.......<<<<<<<<<<..<<........<<<<.<<<<

M.fervidus	GGGGAUGCAAGGGUGAAAAUCUGCCAAUGAUAUGAGGCAG
#=GR M.fervidus SS  <<<<<<<...>>>>.....>>>>>>..>......<<<<<<

M.fervidus	AGAUUGCCCGCUUAGAUGAAUGCUGCCUAAACAGAAGGUG
#=GR M.fervidus SS  <....<<<<...........................<<<<

M.fervidus	GCUUA
#=GR M.fervidus SS	<<<<.

//
# STOCKHOLM 1.0

#=GS M.jannaschii DE converted from brown dataset ct file

M.jannaschii		AGGGGGCUGGUGACUUUCCCCUCUUUAAGAGGGGAGGAA
#=GR M.jannaschii SS  >>>>>>>>AAAAAA...>>>>>>>...<<<<<<<....>

M.jannaschii	GUUCCGCCCACCCCAUUUAUGGGCAGCGUCCCCUGAGAAG
#=GR M.jannaschii SS  >>.>>>>>>>>>>......>>>>>>>.>.>>>>>....<<

M.jannaschii	GGGCGGGAGAUGCAGCAGAAACGACACGGCUCCGGAAGAG
#=GR M.jannaschii SS  <<<<>>>>>>>>>>............>>>>>>>>>>>>..

M.jannaschii	AUGACGAUGAUAGUGAAAGUUGAGGACUUCCGGAGAACCG
#=GR M.jannaschii SS  ............>>....<<......<<<<<<<<<..<<<

M.jannaschii	GUGAAACGGGCAUCUCCCCUGCCCGGGGUGCAAGCCGGUU
#=GR M.jannaschii SS  ........<<<<<<<<<<<<<<<<<<<<<<...>>>>...

M.jannaschii	UCGGCGCUUAGCCGAAUGUCACCGAAAUUACAGAAGGCGG
#=GR M.jannaschii SS  .<<<<............aaaaaa............<<<<<

M.jannaschii	GCUAUAGCCCCCA
#=GR M.jannaschii SS	<<<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS M.maripaludus DE converted from brown dataset ct file

M.maripaludus		AGGGGGCUGGUGACUAUCCACUGGGAGGAAGCUCUGCCC
#=GR M.maripaludus SS  >>>>>>>>AAAAAA...>>....<<....>>>.>>>>>>

M.maripaludus	ACCCAAUUGUGUAGAUUUCCUGAGAAGGAAUGAAUAGGGU
#=GR M.maripaludus SS  >>>>....>>>>>.>.>>>>>....<<<<<<>>>>>>>>>

M.maripaludus	AUAGAAACGACACGGUUCUAAGAAAUAUGACUAUGAUAUU
#=GR M.maripaludus SS  ............>>>>>>>>>>>>.............>>>

M.maripaludus	UUCAAAAUUGAGGAUUCUUAGAAAAUCGAUGAAACGACCU
#=GR M.maripaludus SS  .....<<<......<<<<<<<<<..<<<........<<<<

M.maripaludus	UAUUUUACACGGGUGCAAGCAUAUGUGCUAAGCUGAAUGU
#=GR M.maripaludus SS  <<<<<<<<<<<<<<<...>>....<<............aa

M.maripaludus	CACCGAAAUUACAGAAGGCAGGCUAUAGCCCCCA
#=GR M.maripaludus SS	aaaa............<<<<<<<<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS M.sedula DE converted from brown dataset ct file

M.sedula		UAGGGGAGCCUAACAGGGGGCCACGGGAAACUGGGGAAA
#=GR M.sedula SS  .>>>>>>>>>>>>>BBBBBB...>>>....<<<....>>

M.sedula	CUCCAGCCUCUCGCCCAGGGGGAGUCCCGCGAGGGACGGG
#=GR M.sedula SS  >.>>>>>>>>>.AAAA.>>.>>>>>>>>....<<<<<>>>

M.sedula	GUUAGGUGCUCCGACAACUGCACAGAAACGAGACCUGCGG
#=GR M.sedula SS  >>.....<<<<<>>...>>>>............>>>>>>>

M.sedula	UGGGCCAGAUGAAAAUGAUCAUUUACCCCAUCUGGCGACG
#=GR M.sedula SS  >>>>...............>>.....>>>>>>>>....<<

M.sedula	GAUGGGAGGGUGUGAGAGACCUAUCGUGGGUUGAAACGGC
#=GR M.sedula SS  <<<<<<....<<.......<<<<<<<<<<<........<<

M.sedula	AGAUCUCCCCUUGAGCAAGUAGGGGAGGAUAGGGCAAAAU
#=GR M.sedula SS  <<.<<<<<.<<<<<<...>>.>>>>>>>>...aaaa<<..

M.sedula	GACUCCCCUGAUACGCAGAGCCUAAUCCCCCAAGUACAGA
#=GR M.sedula SS  ..<<<<<<....<<............bbbbbb........

M.sedula	AGCUGGGUUAUUGUUAGGCUCCCCU
#=GR M.sedula SS	.<<<<<<<<...<<<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS N.gregoryi DE converted from brown dataset ct file

N.gregoryi		GGGAGAGAGAGCCCGGCUGCCGCGGGCGUCGUGCGACGC
#=GR N.gregoryi SS  >>>>>>>>>>>BBBBBB...>>>>>>>>>>....<<<<<

N.gregoryi	GCGCGAGGAAAGUCCCCCCACCUGUUCGGGCAGGUGACCA
#=GR N.gregoryi SS  <<<<<....>>>.>>>>>AAAA.>>>>>>>>.>>>>>>>>

N.gregoryi	GACGCAAGUCCGGGGCGGGAGACCGCUGGCUCUGGAACAG
#=GR N.gregoryi SS  >>>....<<<<<<>>>>>....<<<<<>>...>>>>....

N.gregoryi	AAACGACACGUCUCGGCCCGACCGAUGAUGCGUGCGAACC
#=GR N.gregoryi SS  ........>>>>>>>>>>>.........>>>>.>>...>>

N.gregoryi	CGACCGCGAGGAAGGGGAGUUGACCCGCAGAGGGAGUGUG
#=GR N.gregoryi SS  >..>>....<<..<<<..<<.....<<<<.....>>>>>>

N.gregoryi	GUCGGUAUCCCGUGGUUCGAAUCCACGGAUUGCGAGCGCG
#=GR N.gregoryi SS  >>>>>>...>>>>>>.......<<<<<<..>>>>..>>>>

N.gregoryi	GUUCGACGCGUCUCUGACGCGGGACCCGCGACCGAGUGCG
#=GR N.gregoryi SS  >>>>..>>>>>>...<<<<<<<<<<<.<<<.>>>>>>>>>

N.gregoryi	ACGGCACGAGCCGUCGAACACGCACGGCGCGAUUGACCAC
#=GR N.gregoryi SS  >>>>>....<<<<<<<....<<<<<<<<<<<<<<<<<<<<

N.gregoryi	ACUGAGACGGCCGAGGAGCGAUGGAACGGCGAACCCUCAC
#=GR N.gregoryi SS  <<<....<<<<<<<<..<<<........<<<<..<<<<<<

N.gregoryi	CGGUGCAAGUCCGUGCCGUGGUAGCCCGAACAUCUCGCGG
#=GR N.gregoryi SS  <aaaa...>>>>>>>>>......<<<<<<<<...>>>>>>

N.gregoryi	CUCCGCCGCGAACGGCGCGGACGCUUAGCCGAAUGCUGGG
#=GR N.gregoryi SS  >...<<<<<<<..<<<<<<<<<............bbbbbb

N.gregoryi	ACGAACAGAAGGGGGCUUACUCCUCUCACCCGUUU
#=GR N.gregoryi SS	..........<<<<<<<<.<<.<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS P.abyssi DE converted from brown dataset ct file

P.abyssi		UAGGCGAGGGGGCUGGGGGCUGUCGGGCUCGUACCCGAG
#=GR P.abyssi SS  .>>>>>>>>>>>>>BBBBBB...>>>>>....<<<<<..

P.abyssi	GAAGUUCCGCCCACCGCACCGGGGCCGCGGUGCCGCAAGG
#=GR P.abyssi SS  ..>>>.>>>>>AAAA.>>>>>>>.>>>>>>>>>>....<<

P.abyssi	CACCUCCCGAGAGGGAGGGCAACGGCACAGAAACGACACG
#=GR P.abyssi SS  <<<>>>>>....<<<<<>>...>>>>............>>

P.abyssi	UCCCUCGGGGGAUGUGGAUGAAAGCGGUGAAGGCUCCCGG
#=GR P.abyssi SS  >>>>>>>>>>.............>>>>....>>>>>>>>.

P.abyssi	CGACGGGAGCCGAGCUAACCCGCAGACAAUCCCGAGGGGA
#=GR P.abyssi SS  ...<<<<<<<<........<<<<......<<<<<<<<<<.

P.abyssi	UCGGUGAAACGGCCGUCCCGCGGGGUGCAAGGCCGAGUUA
#=GR P.abyssi SS  .<<........<<<<.<<<<<<<aaaa...>>>>......

P.abyssi	GGGCCGAUGAGUUCCCGGUGUGAGGCCCGUGGUAGGCCGC
#=GR P.abyssi SS  >>>>>...>>>..<<<<<<<<<<<<<<<......<<<<..

P.abyssi	UUAGUCGAAUGCCCCCGUAGUACAGAAGGCGGGCUAUAGC
#=GR P.abyssi SS  ..........bbbbbb...........<<<<<<<<..<<<

P.abyssi	CCCCUCGCCUA
#=GR P.abyssi SS	<<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS S.acidocaldarius DE converted from brown dataset ct file

S.acidocaldarius		UAGGGGAGCCUAACAGGGGGUUACGGGAAUAUCCUGAGG
#=GR S.acidocaldarius SS  .>>>>>>>>>>>>>BBBBBB...>>>>>...<<<<<...

S.acidocaldarius	AAACUCCAGCCUCCAAGCCUCAUGGGAGCAGUUAGAUCUG
#=GR S.acidocaldarius SS  .>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>....<<<<

S.acidocaldarius	CAGGGUUAGUGCUCUGGCUACUGCACAGAAACGUAACCGG
#=GR S.acidocaldarius SS  <>>>>>....<<<<<>>...>>>>............>>>>

S.acidocaldarius	UAUAAUAGGAUAUGAAAAUGAGUUUAUAUGUAGUCUAGGU
#=GR S.acidocaldarius SS  >>>>>>>...............>>..>>>>>>>>>>>>..

S.acidocaldarius	AACUAGGCUACAUAAAUGAGACCUAUUAUACCGGCUGAAA
#=GR S.acidocaldarius SS  ..<<<<<<<<<<<<<<.......<<<<<<<<<<<......

S.acidocaldarius	CGGCAGUCCUCCCAGGAGCAAGUAAGGAGGGGAUGAGUUG
#=GR S.acidocaldarius SS  ..<<<<.<<<<<<<aaaa...>>.>>>>>>>...>>>..<

S.acidocaldarius	AGGUUCAACCCUCCUAAGGACGCUUAGUAGAAUCCCCCUA
#=GR S.acidocaldarius SS  <<<<<<<<<<<<<<<....<<............bbbbbb.

S.acidocaldarius	AAUACAAAAGCUGGGUUAUUGUUAGGCUCCCCUUAU
#=GR S.acidocaldarius SS	.........<<<<<<<<...<<<<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS S.shibatae DE converted from brown dataset ct file

S.shibatae		GAGGAAAGUCCAGCCUCCAACCCUUACAAGAACCCCGUA
#=GR S.shibatae SS  .....>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>...

S.shibatae	AGGGGUAGGGAUAGAAUCCCUGGCUACUACACAGAAACGA
#=GR S.shibatae SS  .<<<<<>>>>>.....<<<<<>>...>>>>..........

S.shibatae	AGCCCUAAUACUAGAUAGAUGAUUGGACCUACUAGCAAGU
#=GR S.shibatae SS  .>>>>>>>>>>>...........>>...>>>>>>>>>>..

S.shibatae	AAUUGCUAGUAGUACGAUAAUGAUGAAAGUAUUAGGGCUU
#=GR S.shibatae SS  ..<<<<<<<<<<..<<...........<<<<<<<<<<<..

S.shibatae	GAAACGGUAGACCUCUUGGGAGCAAGUUGAAGGGGGAUGA
#=GR S.shibatae SS  ......<<<<.<<<<<<<aaaa...>>...>>>>>>..>>

S.shibatae	GCAAAGGGUUGACUCCUUAUAGUACGCUUAGUCGAAUCCC
#=GR S.shibatae SS  >..<<<<<<<<<<<<<<<.....<<...............

S.shibatae	CUCAGUACAAAAGCUGGCUUA
#=GR S.shibatae SS	............<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS SL2D DE converted from brown dataset ct file

SL2D		GAGGAAAGUCCACCCACCUGCUGAGCGCGCAGCCGUAUG
#=GR SL2D SS  .....>>>.>>>>>AAAA.>>>>>>>.>>>>>>>>>>>.

SL2D	CAAGUACGGGUGGCGAGAGUCACGGCUAUGGCACAGAAAC
#=GR SL2D SS  ...<<<<<<>>>>>....<<<<<>>...>>>>........

SL2D	GACACGGCCUGCCCCCAGCCAUGAUGCGAUCGAGUCCAUU
#=GR SL2D SS  ....>>>>>>>>>>...........>>>>....>>>>>..

SL2D	CGUGGGCAAUGCGUCCGCUCCCAACAAGCGCGGAUGUCUC
#=GR SL2D SS  ..<<<<<...>>>>>>>>...........<<<<<<<<.<<

SL2D	GCUGAUGCAUAAGGGUAGGUAGCGACGAAACGGUGAAUCC
#=GR SL2D SS  <<..........<<<<<<<<..<<........<<<<.<<<

SL2D	UGCGGGUGCAAGCCAAAACAGGGCAACAAGGCUGCUCAGU
#=GR SL2D SS  <<<<aaaa...>>>>.....>>>>>....>>>.<<<<<<<

SL2D	GCCUGCCCGGGUAUGGCGCGUAGCUGAAUUGCCGCACCGA
#=GR SL2D SS  <<<<<<<<.....<<<<.......................

SL2D	CAGAAGCGGGCUUA
#=GR SL2D SS	.....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS SLC DE converted from brown dataset ct file

SLC		GAGGAAACUCCACCCAUCAUACAGAACCGUGAUGCCAGC
#=GR SLC SS  .....>>>.>>>>>AAAA.>>>>>..>>>>>>>>>>...

SLC	AGGCAUCUGCUGAGAAGCAGGACACUGGAGCAGAAACGAU
#=GR SLC SS  .<<<<<>>>>>....<<<<<>>...>>>>...........

SLC	AUGUUUUCUAAUGGACGAACAUGAUGCUUAAAUGCUGAUG
#=GR SLC SS  .>>>>>>>>>>>>............>>>....<<<.....

SLC	GACAUUAGAAAAAUACAGUGAAACGGCUAUUCCACGGGAU
#=GR SLC SS  ..<<<<<<<<<<...<<........<<<<.<<<<<<<aaa

SLC	GCAAGGACAAAUACUGUUUAUGGAUCCUGUAUGAAACAGA
#=GR SLC SS  a...>>>>.....>>>>>...>>>..<<<<<<<<<<<<<.

SLC	GGUAGUCCGCAAAGAUGAAUGCUGCUAAAACAGAAGGUGG
#=GR SLC SS  ....<<<<...........................<<<<<

SLC	GUUA
#=GR SLC SS	<<<.

//
# STOCKHOLM 1.0

#=GS T.acidophilum DE converted from brown dataset ct file

T.acidophilum		GGCGGGAAAGCGCGAGGGCAGCUGACGCCCUUGAGGUGA
#=GR T.acidophilum SS  ...>>>>>>>>>>>>>>>>>>>...>>>>.....<<<<.

T.acidophilum	GGAAAGUCCCCCCUCCUCGGCGGUAUCCGGCUGGCGCAAG
#=GR T.acidophilum SS  ...BBB.BBBBBAAAA.>>>>>>.>>>>>>>>>>>....<

T.acidophilum	CCAGCAUCCUGAGAGGGAUGGUAAAGGCAAAAGAAAUAAA
#=GR T.acidophilum SS  <<<<<>>>>>....<<<<<>>...>>>>............

T.acidophilum	CGGUCUCCGGUAAAGCAUGAUUCCGAAGGGAUGACGUUUC
#=GR T.acidophilum SS  >>>>>>>>>>.........>>>>>...<<<<<.......<

T.acidophilum	CGGAGGAUCCGAUGGAAAGCCUCCCCGGAUGGAGAAAGUC
#=GR T.acidophilum SS  <<<<<<..<<<.......<<<<.<<<<<<<aaaa...>>>

T.acidophilum	UAAACGGAUCCUGUGAGGCCGCCGUGAGGAUCGGGUAAGA
#=GR T.acidophilum SS  >.....>>>>>..>>>..<<<<<<<<<<<<<<.....<<<

T.acidophilum	CGAACAGUCGAAUGCUGCCAGCCCAUUGGGUGAACAGAAG
#=GR T.acidophilum SS  <............<<<<<<>>>>>...<<<<<.......b

T.acidophilum	GGGGCUUACUCCGCGGAUUCCCGCCA
#=GR T.acidophilum SS	bbbbbbb.<<.<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.A.chroococcum DE converted from brown dataset ct file

bacteria.A.chroococcum		GAGGAAAGUCCGGGCUCCAUAGGGCAGAGUGCCAGGUAA
#=GR bacteria.A.chroococcum SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.A.chroococcum	CGCCUGGGAGGCGUGAGCCUACGGAAAGUGCCACAGAAAA
#=GR bacteria.A.chroococcum SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.A.chroococcum	CAACCGCCUAAGUGCGCAAGCGCCGGUAAGGGUGAAAAGG
#=GR bacteria.A.chroococcum SS  ...>>>>>...>>>>....<<<<.<<<..<<.......>>

bacteria.A.chroococcum	UGCGGUAAGAGCGCACCGCACGGCUGGCAACAGUCCGUGG
#=GR bacteria.A.chroococcum SS  >>>>.......<<<<<<>>>>>>>>>....<<<.<<<<<.

bacteria.A.chroococcum	CUAGGUAAACCCCACUCGGAGCAAGACCAAAUAGGGAUCC
#=GR bacteria.A.chroococcum SS  <..<<<..<<<<<<<<<<<<<...>>>>......>>>>>>

bacteria.A.chroococcum	GUUGGCGUGGCCCGCGCUGGAUCCGGGUAGGUUGCUAGAG
#=GR bacteria.A.chroococcum SS  ...>>>>>.aaaa<<<<<<<<<<<.....<<<<......>

bacteria.A.chroococcum	GCGGCCAGCGAUGGUCGUCGUAGAGGAAUGACUGUCCUCG
#=GR bacteria.A.chroococcum SS  >>>>>>>....<<<<<<<<.....................

bacteria.A.chroococcum	ACAGAACCCGGCUUA
#=GR bacteria.A.chroococcum SS	......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.A.erythreum DE converted from brown dataset ct file

bacteria.A.erythreum		CACAGAGCACGGUGGUGGCCAACAGCCACCCACGGCGAC
#=GR bacteria.A.erythreum SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.A.erythreum	GUGCGGGACAGUGCCACAGAGAACAGACCGCCAGCGGCCC
#=GR bacteria.A.erythreum SS  <<<.<>>...>>>>>............>>>>>..>>>>>>

bacteria.A.erythreum	CGCGGCCUUCGGGCCACGGGGUGCGGGCAAGGGUGAAACG
#=GR bacteria.A.erythreum SS  >>>>>>>....<<<<<<<<<<<.<<<<<..<<.......>

bacteria.A.erythreum	GUGAGGUAAGAGCUCACCAGCGACGUCGGCGACGGCGUCG
#=GR bacteria.A.erythreum SS  >>>>>.......<<<<<<>>>>>>>>>>....<<<<<<<<

bacteria.A.erythreum	GCUCGGUAAACCCCACCGGGAGCAAGACCAAGAGGGCGCU
#=GR bacteria.A.erythreum SS  .<<.<<<..<<<<<<<<<<......>>>>....>>>>>>.

bacteria.A.erythreum	CCGGCGCCUGCGCUGACGGGCUGCUCGUCCGACGUCAGCG
#=GR bacteria.A.erythreum SS  ...<<<<<<..>>>>>>>>>>.aaaa<<<<<...<<<<<.

bacteria.A.erythreum	GGUAGGUCGCUCGAGGCACGCAGCAAUGCGUGACCCAGAU
#=GR bacteria.A.erythreum SS  ....<<<<......>>>>>>>>....<<<<<<<<......

bacteria.A.erythreum	GGAUGGUCGCCCCCCAGCCCUCGGGCCGGGG
#=GR bacteria.A.erythreum SS	...........>>>>>>>>....<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.A.eutrophus DE converted from brown dataset ct file

bacteria.A.eutrophus		AAAGCAGGCCAGGCAACCGCUGCCUGCACCGCAAGGUGC
#=GR bacteria.A.eutrophus SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>>>>....<<<<<

bacteria.A.eutrophus	AGGGGGAGGAAAGUCCGGACUCCACAGGGCAGGGUGUUGG
#=GR bacteria.A.eutrophus SS  <<<<<<....BBB.BBBBB>>>>...AAAA.>>>>>>>>>

bacteria.A.eutrophus	CUAACAGCCAUCCACGGCAACGUGCGGAAUAGGGCCACAG
#=GR bacteria.A.eutrophus SS  >.....<<<<<>>>>>....<<<<.<>>...>>>>>....

bacteria.A.eutrophus	AGACGAGUCUUGCCGCCGGGUUCGCCCGGCGGGAAGGGUG
#=GR bacteria.A.eutrophus SS  .......>>>>>>>>>>>>>....<<<<<<<<<<<<<...

bacteria.A.eutrophus	AAACGCGGUAACCUCCACCUGGAGCAAUCCCAAAUAGGCA
#=GR bacteria.A.eutrophus SS  ......<<<..<<<<<<<<<<<<<...>>>>......>>>

bacteria.A.eutrophus	GGCGAUGAAGCGGCCCGCUGAGUCUGCGGGUAGGGAGCUG
#=GR bacteria.A.eutrophus SS  >>>...>>>>>.aaaa<<<<<<<<<<<.....<<<<....

bacteria.A.eutrophus	GAGCCGGCUGGUAACAGCCGGCCUAGAGGAAUGGUUGUCA
#=GR bacteria.A.eutrophus SS  ..>>>>>>>>....<<<<<<<<..........<<<<<<<>

bacteria.A.eutrophus	CGCACCGUUUGCCGCAAGGCGGGCGGGGCGCACAGAAUCC
#=GR bacteria.A.eutrophus SS  >>>>>>>>>>>>>....<<<<<<<<<<<<<<......bbb

bacteria.A.eutrophus	GGCUUAUCGGCCUGCUUUGCUU
#=GR bacteria.A.eutrophus SS	bbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.A.fastidiosum DE converted from brown dataset ct file

bacteria.A.fastidiosum		CACAGAGCAACGGUGGUGGCUAACGGCCACCCACGGCGA
#=GR bacteria.A.fastidiosum SS  >...AAAA..>>>>>>>>>>.....<<<<<>>>>>....

bacteria.A.fastidiosum	CGUGCGGGACAGUGCCACAGAAAUCAGACCGCCAGCGGCC
#=GR bacteria.A.fastidiosum SS  <<<<.<>>...>>>>>............>>>>>..>>>>>

bacteria.A.fastidiosum	GCCGCUCCUCGGAGCAGCGGUGCGGGUAAGGGUGAAACGG
#=GR bacteria.A.fastidiosum SS  >>>>>>>....<<<<<<<<<<.<<<<<..<<.......>>

bacteria.A.fastidiosum	UGAGGUAAGAGCUCACCAGCGCUCCGGGUGACCGGGGCGG
#=GR bacteria.A.fastidiosum SS  >>>>.......<<<<<<>>>>>>>>>>....<<<<<<<<.

bacteria.A.fastidiosum	CUAGGUAAACCCCACCGGGAGCAAGACCAAGAGAGUCGCG
#=GR bacteria.A.fastidiosum SS  <<.<<<..<<<<<<<<<<......>>>>....>>>>..>>

bacteria.A.fastidiosum	UGGCGCUUCGGCGGUGCACGGCUUGCGCUGACGGGCUGCU
#=GR bacteria.A.fastidiosum SS  >>.>>>....<<<...<<<<<<<<..>>>>>>>>>>.aaa

bacteria.A.fastidiosum	CGUCCGAUGUCAGCGGGUAGGUUGCACGAGGCGUCCAGCA
#=GR bacteria.A.fastidiosum SS  a<<<<<...<<<<<.....<<<<......>>>>>>>>...

bacteria.A.fastidiosum	AUGGGCGUCCCAGAUGGAUGGUCGCCCACG
#=GR bacteria.A.fastidiosum SS	.<<<<<<<<.....................

//
# STOCKHOLM 1.0

#=GS bacteria.A.nidulans DE converted from brown dataset ct file

bacteria.A.nidulans		GCGGGGAAAGGAGGCGAGGCAGUUGCGGCUCAGGCUUCG
#=GR bacteria.A.nidulans SS  .....>>>>>>>>>.>>>>>>>>>.>>>>>>>>>>....

bacteria.A.nidulans	GUUAUGGGCUGAGGAAAGUCCGGGCUCCCAAAAGACCAGA
#=GR bacteria.A.nidulans SS  <<<.<<<<<<<....BBB.BBBBBAAAAA.>>>>>>>.>>

bacteria.A.nidulans	CUUGCUGGGUAACGCCCAGUGCGGGUGACCGUGAGGAGAG
#=GR bacteria.A.nidulans SS  >.>>>>>>>.....<<<<<>>>>>....<<<<.<>>...>

bacteria.A.nidulans	UGCCACAGAAACAUACCGCCGAUGGCCUGCUUGCAGGCAC
#=GR bacteria.A.nidulans SS  >>>>...........>>>>>..>>>>>>>....<<<<<.<

bacteria.A.nidulans	AGGUAAGGGUGCAAGGGUGCGGUAAGAGCGCACCAGCAAC
#=GR bacteria.A.nidulans SS  <<<<..<<.......>>>>>>.......<<<<<<>>>>>>

bacteria.A.nidulans	AUCGAGAGGUGUUGGCUCGGUAAACCCCGGUUGGGAGCAA
#=GR bacteria.A.nidulans SS  >>>....<<<<<<<.<<.<<<..<<<<<<<<<aaaaa...

bacteria.A.nidulans	GGUGGAGGGACAACGGUUGGUCUUUUACCUGUUCCGUUUA
#=GR bacteria.A.nidulans SS  >>>....>>>>>..>>>.<<<<<<<.<<<<<<<<......

bacteria.A.nidulans	UGGACCGCUAGAGGUGGCUAGUAAUAGCCAUCCCAGAGAG
#=GR bacteria.A.nidulans SS  ...<<<......>>>>>>>>....<<<<<<<<........

bacteria.A.nidulans	AUAACAGCCCUCUGUCUUCGACAGAGAACAGAACCCGGCU
#=GR bacteria.A.nidulans SS  ..<<<<<<<>>>>>>>...<<<<<<<.......bbbbbbb

bacteria.A.nidulans	UAUGUCCUGCUUUCCCUACUUUAUUU
#=GR bacteria.A.nidulans SS	b.<.<<<<<<<<<<............

//
# STOCKHOLM 1.0

#=GS bacteria.A.tumefaciens DE converted from brown dataset ct file

bacteria.A.tumefaciens		CCAGUUGGCCGGGCAGCCGCGCCUUACCAAUGUCGAAAG
#=GR bacteria.A.tumefaciens SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>>...>>>....<

bacteria.A.tumefaciens	ACGGUAAGGUGAGGAAAGUCCGGGCUCCACGGAAAUACGG
#=GR bacteria.A.tumefaciens SS  <<<<<<<<<<<....BBB.BBBBB>>>>.AAAAAAA.>>>

bacteria.A.tumefaciens	UGCCGGAUAACGUCCGGCGGGGGCGACCCCAGGGAAAGUG
#=GR bacteria.A.tumefaciens SS  >>>>>>>.....<<<<<>>>>>....<<<<.<>>...>>>

bacteria.A.tumefaciens	CCACAGAGAGCAAACCGCCAUGCCUUGCAUGGUAAGGGUG
#=GR bacteria.A.tumefaciens SS  >>............>>>>>>>>>...<<<<<<<..<<...

bacteria.A.tumefaciens	AAAGGGUGGGGUAAGAGCCCACCGCGCCGCUGGUGACAGU
#=GR bacteria.A.tumefaciens SS  ....>>>>>>.......<<<<<<>>>>>>>>>....<<<<

bacteria.A.tumefaciens	GGUGGCAAGGUAAACCCCACCGGGAGCAAGACCGAAUAGG
#=GR bacteria.A.tumefaciens SS  <<<<.<..<<<..<<<<<<<<<<<<<...>>>>......>

bacteria.A.tumefaciens	GAUGACACGGGGCGGGCGAAAGCCUGUUCACAGCCGGUUU
#=GR bacteria.A.tumefaciens SS  >>>>>>...>>>>>>>>....<<<<<<<<...>>>.aaaa

bacteria.A.tumefaciens	CCGGGCCCGUCAUCCGGGUGGGUUGCGAGAGGCGGCAUGC
#=GR bacteria.A.tumefaciens SS  aaa<<<..<<<<<<<.....<<<<......>>>>>>>>..

bacteria.A.tumefaciens	AAAUGCCGUCCCAGAUGAAUGGCUGCCACGUUCCGGGUCA
#=GR bacteria.A.tumefaciens SS  ..<<<<<<<<..........<<<<<<<>>>>>>>>>....

bacteria.A.tumefaciens	AACCGGGGCCAUACAGAACCCGGCUUACAGGCCAACUGGC
#=GR bacteria.A.tumefaciens SS  ..<<<<<<<.<<......bbbbbbbb.<.<<<<<<<<<<.

bacteria.A.tumefaciens	GAA
#=GR bacteria.A.tumefaciens SS	...

//
# STOCKHOLM 1.0

#=GS bacteria.Anabaena-ATCC29413 DE converted from brown dataset ct file

bacteria.Anabaena-ATCC29413		GGGGAGGAAAGUCCGGGCUCCCGAAAGACCAGACUUGCU
#=GR bacteria.Anabaena-ATCC29413 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Anabaena-ATCC29413	GGAUAACUUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCAC
#=GR bacteria.Anabaena-ATCC29413 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Anabaena-ATCC29413	AGAAAAAUACCGCCAAAACAAUUCAAAAUUCAAAAUUCAA
#=GR bacteria.Anabaena-ATCC29413 SS  .........>>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>

bacteria.Anabaena-ATCC29413	AAUUCAAAAUGAAUAAUUUUGGAUUUUGAGUCUUAGUUAU
#=GR bacteria.Anabaena-ATCC29413 SS  >>>>>>>>>>.....<<<<<<<<<<<<<<<<<<<<<<<<<

bacteria.Anabaena-ATCC29413	GAAUUCAAUUUUGGUAAGGGUGCAAAGGUGCGGUAAGAGC
#=GR bacteria.Anabaena-ATCC29413 SS  <<<<<..<<<<<<<<..<<.......>>>>>>.......<

bacteria.Anabaena-ATCC29413	GCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCG
#=GR bacteria.Anabaena-ATCC29413 SS  <<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<

bacteria.Anabaena-ATCC29413	GUUGGGAGCAAGGCCGAAGGAACUAUGGUUGGUCUUUUAC
#=GR bacteria.Anabaena-ATCC29413 SS  <<<aaaaa...>>>.....>>>>>..>>>.<<<<<<<.<<

bacteria.Anabaena-ATCC29413	CAGUUCCGUUAUCAGAGAGCCGCUAGAGGCGUUUGGUAAC
#=GR bacteria.Anabaena-ATCC29413 SS  <<<<<<............<<<......>>>>>>>>....<

bacteria.Anabaena-ATCC29413	AAACGUCCCAGAUAGAUAAUCGCCCUCGUGUAAAGCAAUU
#=GR bacteria.Anabaena-ATCC29413 SS  <<<<<<<.................>>>>>>>>>>....<<

bacteria.Anabaena-ATCC29413	UACACAGAGAACAGAACCCGGCUUAC
#=GR bacteria.Anabaena-ATCC29413 SS	<<<<<.<<<.......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.B.bronchiseptica DE converted from brown dataset ct file

bacteria.B.bronchiseptica		AGGGCAGAUCGGGCAAUCGCGGGGGAUGCAAAUCCUUCG
#=GR bacteria.B.bronchiseptica SS  ...................>>>>>>>>....<<<<<<<<

bacteria.B.bronchiseptica	AGGAAGGUCCGGACUCCACAGGGCGGGAUAGCGGCUAACG
#=GR bacteria.B.bronchiseptica SS  ..............................>>>>>.....

bacteria.B.bronchiseptica	GCCGUCCGGCGACGCUGGCGGGCUUGCCCGCCGGAAAAGC
#=GR bacteria.B.bronchiseptica SS  <<<<<>>>>>>>>>>>>>>>>>....<<<<<<<<<<<<<<

bacteria.B.bronchiseptica	CGAGGAACAGGGCCACAGAGACGAGUCUGUCAUGAGGGCG
#=GR bacteria.B.bronchiseptica SS  <<.<.....>>>>>...........>>>>>>>>>>>>>>>

bacteria.B.bronchiseptica	CGCCUGGCGCGCACCGGCACGGCCAUCUCCGUGCCGCGCC
#=GR bacteria.B.bronchiseptica SS  >>>...<<<<<<<<>>>>>>>>......<<<<<<<<>>>>

bacteria.B.bronchiseptica	GUCCGGAAACGGGCGGCGGCAUGACAGGGUGAAACGCGGC
#=GR bacteria.B.bronchiseptica SS  >>>>>....<<<<<<<<<<<<<<<<<<<.........<<<

bacteria.B.bronchiseptica	AACC
#=GR bacteria.B.bronchiseptica SS	..<<

//
# STOCKHOLM 1.0

#=GS bacteria.B.burgdorferi DE converted from brown dataset ct file

bacteria.B.burgdorferi		AGCUGGCAGCUAGCCAUCGCUUAGUUUUAUAAUUAAAGC
#=GR bacteria.B.burgdorferi SS  >>>>>>>>>>>BBBBBBB.>>>>>>>>>>....<<<<<<

bacteria.B.burgdorferi	UAAGAGGAAAGUCCGAGCUCCAAUAAGAACAUAAUGCUAG
#=GR bacteria.B.burgdorferi SS  <<<<....>>>.>>>>>AAAA....>>>>>.>>>>>>>>>

bacteria.B.burgdorferi	GUAAUGCCUAGGGGUUUUAAACCUAAGAAAGUGUCGCAGA
#=GR bacteria.B.burgdorferi SS  >.....<<<<<>>>>>...<<<<<.>>...>>>>>.....

bacteria.B.burgdorferi	AAAUUACCGCCGUAAAAGGUAAGGGUGAAAAGGUGAGGUA
#=GR bacteria.B.burgdorferi SS  ......>>>>>......<<<..<<.......>>>>>>...

bacteria.B.burgdorferi	AGAGCUCACCGCUUAUUUAGCAAUAAAUACAGGCAAGAUA
#=GR bacteria.B.burgdorferi SS  ....<<<<<<>>>>>>>>>....<<<<<..<<<<..<<<.

bacteria.B.burgdorferi	AACCUCAUUAGGAGCAAGAUCAAGUAUGAAAGCACCCUUU
#=GR bacteria.B.burgdorferi SS  .<<<<<<<<<aaaa...>>>>......>>>>>>..>>>>>

bacteria.B.burgdorferi	GUUCUUGAGGACAUGCUUACGGGUAGAUCGCUCGAUUUUU
#=GR bacteria.B.burgdorferi SS  .<<<<<<<<<<...<<<<<<.....<<<<......>>>>>

bacteria.B.burgdorferi	UUAGCGAUAAAAAAAUAAGAGAGAUGAUGGCAUAGUACAG
#=GR bacteria.B.burgdorferi SS  >>>....<<<<<<<<..........bbbbbbb........

bacteria.B.burgdorferi	AACUCGGCUUAUGGGUGUCAGCUUAAU
#=GR bacteria.B.burgdorferi SS	..<<<<<<<<.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.B.thetaiotaomicron DE converted from brown dataset ct file

bacteria.B.thetaiotaomicron		GCAGUUGGCCGGUCUGUCGCGUGCGCGUUUCGUGCAGGA
#=GR bacteria.B.thetaiotaomicron SS  >>>>>>>>>>>>>>>>>>.>>>>>>>.....<<<<<<<.

bacteria.B.thetaiotaomicron	GGAAAGUCCGGGCAACACAGAGCAUCCUACUUCCUAACAG
#=GR bacteria.B.thetaiotaomicron SS  ...BBB.BBBBB>>>>...AAAA.>>>>>>>>>>.....<

bacteria.B.thetaiotaomicron	AAAGCUGUCCGCGAGGGUAGAGUAACGUAGAAGAAAAUAA
#=GR bacteria.B.thetaiotaomicron SS  <<<<>>>>>>....<<<<<<>>..>>>>>...........

bacteria.B.thetaiotaomicron	CCGCCGCUCCUUUCGGGGAGAGGUAAGGGUGAGAAGGUGG
#=GR bacteria.B.thetaiotaomicron SS  >>>>>>>>>>>....<<<<<<<<<..<<.......>>>>>

bacteria.B.thetaiotaomicron	GGUAAGAGCCUACCAGCAGCAUGGUGACAUGUGGGCUGUA
#=GR bacteria.B.thetaiotaomicron SS  >.......<<<<<<>>>>>>>>>....<<<<<<<.<<.<<

bacteria.B.thetaiotaomicron	CGUCUUAGGAGUUGUAAGGUCAUGUAAACCGGCGUUAUGA
#=GR bacteria.B.thetaiotaomicron SS  <<<<<<<<<<<<<<...>>>>.......>>>>>>>....>

bacteria.B.thetaiotaomicron	GAGUUGCUCGCUCCAUGUCGGAGGGUAGACCGCUAAAGUG
#=GR bacteria.B.thetaiotaomicron SS  >>>>.aaaa<<<<<<<<<<<<......<<<<......>>>

bacteria.B.thetaiotaomicron	UCGUGGUGACACGCCACUCAGAUAAAUGACAGGCACCUUA
#=GR bacteria.B.thetaiotaomicron SS  >>>>>....<<<<<<<<..........<<<<<<<>>>>>>

bacteria.B.thetaiotaomicron	UUAUAUAAGGUACAGAACUCGGCUUAUAGGCUGACUGCUU
#=GR bacteria.B.thetaiotaomicron SS  >...<<<<<<<......bbbbbbbb.<.<<<<<<<<<<..

bacteria.B.thetaiotaomicron	UU
#=GR bacteria.B.thetaiotaomicron SS	..

//
# STOCKHOLM 1.0

#=GS bacteria.Buchnera-APS DE converted from brown dataset ct file

bacteria.Buchnera-APS		UGAAGUUGACUAAAAACAGUCGCUGUUUAGUUUUUAAAA
#=GR bacteria.Buchnera-APS SS  ...>>>>>>>>>>>BBBBBBB.>>>>>>>>>>.....<.

bacteria.Buchnera-APS	AUUAAAAAGAGGAAAGUCCGGGCUCCAUAGAGCAGGGUGC
#=GR bacteria.Buchnera-APS SS  <<<<<<<<<....>>>.>>>>>>>>>...AAAA.>>>>>>

bacteria.Buchnera-APS	CAGAUAACAUCUGGAAAGCGUGAGCUUAUGACUAGUGCAA
#=GR bacteria.Buchnera-APS SS  >>>>.....<<<<<>>>>>....<<<<.<>>...>>>>>.

bacteria.Buchnera-APS	CAGAAAAUAAACCACCUAUUUUGUAAUAUAUAAAAAUAUG
#=GR bacteria.Buchnera-APS SS  ...........>>>>>>>>>>>>>>...<<<<<<.<<<.<

bacteria.Buchnera-APS	GCCAGGGUGAAAAGGCGUGGUAAGAGCACACCGCAUAAUU
#=GR bacteria.Buchnera-APS SS  <<..<<.......>>>>>>.......<<<<<<>>>>>>>>

bacteria.Buchnera-APS	GGUAACAAUUCAUGGCAUGGUAAACUCCACCCGGAGCAAA
#=GR bacteria.Buchnera-APS SS  >....<<<.<<<<<.<..<<<..<<<<<<<<<<<<<...>

bacteria.Buchnera-APS	GCCAAAUAUAGGAUAAAUUUUUUGUACUGCUCGUACUUCU
#=GR bacteria.Buchnera-APS SS  >>>......>>>>>>.......>>>>>.aaaa<<<<<...

bacteria.Buchnera-APS	UAAACCUGGGUAGGCUGCUUGAAUUAGUAAGUGAUUGCUA
#=GR bacteria.Buchnera-APS SS  .<<<<<<.....<<<<......>>>>>>>>....<<<<<<

bacteria.Buchnera-APS	AUCUAGAUGAAUGACUGUUAAAACAGAACCCGGCUUACAC
#=GR bacteria.Buchnera-APS SS  <<..........bbbbbbb.........<<<<<<<<.<.<

bacteria.Buchnera-APS	GAGUCAACUUCAAUAAC
#=GR bacteria.Buchnera-APS SS	<<<<<<<<<........

//
# STOCKHOLM 1.0

#=GS bacteria.C.acetobutylicum DE converted from brown dataset ct file

bacteria.C.acetobutylicum		CGAGUAAGCCAGACAAUCGCUGCUGCAAUUUGCAGGAGA
#=GR bacteria.C.acetobutylicum SS  >>>>>>>>>>>BBBBBBB.>>>>>>>>...<<<<<<<<.

bacteria.C.acetobutylicum	GGAAAGUCCGAGCUCCAUAGGGCAGGGUGCCGGGUAACUC
#=GR bacteria.C.acetobutylicum SS  ...>>>.>>>>>>>>>...AAAA.>>>>>>>>>>.....<

bacteria.C.acetobutylicum	CCGGUCAAGGCGACUUGAAGGAAAGUGCAACAGAGAUAUA
#=GR bacteria.C.acetobutylicum SS  <<<<>>>>>....<<<<.<>>...>>>>>...........

bacteria.C.acetobutylicum	CCGCCAUUUUAUAAUGGUAAGGGUGGAAAGGCGAGGUAAG
#=GR bacteria.C.acetobutylicum SS  >>>>>>>>....<<<<<<..<<.......>>>>>>.....

bacteria.C.acetobutylicum	AGCUCACCAGCGCAUUGGCGACUUUGCGGCUAUGUAAACC
#=GR bacteria.C.acetobutylicum SS  ..<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<

bacteria.C.acetobutylicum	CCAUCUGGAGCAAGAUCAAAUAGGGAAGCGUUUUGGAGUG
#=GR bacteria.C.acetobutylicum SS  <<<<<<<<<<...>>>>......>>>>>>.....>>>>>.

bacteria.C.acetobutylicum	GCCCGCUCUGCUUCCGGGUAGCAUCGCUUGAAUCUUAUGG
#=GR bacteria.C.acetobutylicum SS  aaaa<<<<<<<<<<<.....<.<<<......>>>>>>>>.

bacteria.C.acetobutylicum	UAACAUAAGGUCUAGAUAGAUGAUUGUCGAAUACAGAACU
#=GR bacteria.C.acetobutylicum SS  ...<<<<<<<<..........bbbbbbb..........<<

bacteria.C.acetobutylicum	CGGCUUACAGGUUUAGUCGUCCAUUG
#=GR bacteria.C.acetobutylicum SS	<<<<<<.<.<<<<<<<<<<.......

//
# STOCKHOLM 1.0

#=GS bacteria.C.aurantiacus DE converted from brown dataset ct file

bacteria.C.aurantiacus		GAGGAAAGUCCGGGCUCCAUAGAGCAGGGUGGUGGGUAA
#=GR bacteria.C.aurantiacus SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.C.aurantiacus	CGCCCACCCGGGGUGACCCGCGGGAAAGUGCCACAGAGAA
#=GR bacteria.C.aurantiacus SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.C.aurantiacus	CAGACUGCCGGUUUCGAGCCGGUGAGGGUGAAACGGUGGA
#=GR bacteria.C.aurantiacus SS  ....>>>>>>>>>...<<<<<<<..<<.......>>>>>>

bacteria.C.aurantiacus	GUAAGUGCCCACCGCGUCAUCGGUGACGGUGACGGCAUGG
#=GR bacteria.C.aurantiacus SS  .......<<<<<<>>>>>>>>>....<<<<<<<<.<..<<

bacteria.C.aurantiacus	CAAACCCCACCUGGAGCAAGGCCAAGAAGACCGUGAGGUC
#=GR bacteria.C.aurantiacus SS  <..<<<<<<<<<<<<<...>>>>....>>>>>....<<<<

bacteria.C.aurantiacus	GCGGACGCGUUUGAGGGUUGCUCGCUUGAGUGUCUGGGUA
#=GR bacteria.C.aurantiacus SS  <.>>>>>>....>>>>>>.aaaa<<<<<<<<<<<<.....

bacteria.C.aurantiacus	GGCUGCGCAGCCGAAAGGCUGGAGGACACCAGCAAUGGUG
#=GR bacteria.C.aurantiacus SS  <<<<...>>>>>....<<<<<..>>>>>>>>....<<<<<

bacteria.C.aurantiacus	UUCACAGAUGGAUGAUCACCGGCCCGGCGGGGCUACAGAA
#=GR bacteria.C.aurantiacus SS  <<<.................>>>>>....<<<<<......

bacteria.C.aurantiacus	UCCGGCUUA
#=GR bacteria.C.aurantiacus SS	<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.C.crescentus DE converted from brown dataset ct file

bacteria.C.crescentus		CGGACCAGAUGAUCGGGCGGUCGCGUCGUCUUCGGACGC
#=GR bacteria.C.crescentus SS  ....>>>>>>>>>>>>>>>>>>.>>>>>>>....<<<<<

bacteria.C.crescentus	CGAGGAAAGUCCGGGCUCCACGGUGACAAGGCGGUGGGUA
#=GR bacteria.C.crescentus SS  <<....BBB.BBBBB>>>>.AAAAAAA.>>>>>>>>>>..

bacteria.C.crescentus	ACGCCCACCGGGAGCGAUCCCAGGGAUAGCGCCACAGAAA
#=GR bacteria.C.crescentus SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.C.crescentus	GCAAACCUCCUCCCUACGGGGCGGGAAGGGUGAAAGGGUG
#=GR bacteria.C.crescentus SS  .....>>>>>>>>>....<<<<<<<..<<.......>>>>

bacteria.C.crescentus	GGGUAAGAGCCCACCGCGGACCUGGUGACAGGGACGGCAU
#=GR bacteria.C.crescentus SS  >>.......<<<<<<>>>>>>>>>....<<<<<<<<.<..

bacteria.C.crescentus	GGCAAGCCCCGCCUGGAGCAAGACCGAAUAGGGAUCCCGC
#=GR bacteria.C.crescentus SS  <<<..<<<<<<<<<<<<<...>>>>......>>>>>>...

bacteria.C.crescentus	GUCGGCCUCGCGCCGACUAGGCCGUCACUGGCUGAGAGGA
#=GR bacteria.C.crescentus SS  .>>>>>.....<<<<<>>>>>>.aaaaaaa<<<<<<.<<<

bacteria.C.crescentus	UCCGGGUAGGUCGCGAGAGCCGUCCAGCAAUGGCCGGCCU
#=GR bacteria.C.crescentus SS  <<<.....<<<<......>>>>>>>>....<<<<<<<<..

bacteria.C.crescentus	AGAGGAAUGAUCGUCGCCGUCUCCCUGUCUUCGGAUGGGC
#=GR bacteria.C.crescentus SS  ........<<<<<<<>>>>>>>>>>>>>>....<<<<<<.

bacteria.C.crescentus	GGGGCGGAACAGAACCCGGCUUACAGAUCAUCUGGUCCG
#=GR bacteria.C.crescentus SS	<<<<<<<<......bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.C.difficile DE converted from brown dataset ct file

bacteria.C.difficile		AAUAUUAAGUAAGCCAGAUAAUCGCAUGUAAUCUUACAU
#=GR bacteria.C.difficile SS  .....>>>>>>>>>>>BBBBBBB.>>>>>>....<<<<<

bacteria.C.difficile	GAGGAAAGUCGGAGCUCCAUAGAGCAGGGUGCUAGGUAAC
#=GR bacteria.C.difficile SS  <....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>....

bacteria.C.difficile	GCCUAGUGGGAGCGAUCCUAAGGAUAGUGCAACAGAAAUA
#=GR bacteria.C.difficile SS  .<<<<<>>>>>....<<<<.<>>...>>>>>.........

bacteria.C.difficile	AACCGCCACUAUUGUGGUAAGGAUGGAAAGGCGAGGUAAG
#=GR bacteria.C.difficile SS  ..>>>>>>>....<<<<<..<<.......>>>>>>.....

bacteria.C.difficile	AGCUCACCAGCAGCUAGGCGACUAGUUGGCUAUGUAAACC
#=GR bacteria.C.difficile SS  ..<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<

bacteria.C.difficile	CCACCUGGAGCAAGACCAAGAUAGGAAUAAAGAGUGCUGC
#=GR bacteria.C.difficile SS  <<<<<<<<<<...>>>>.......>>>>>>.>>>>>>.aa

bacteria.C.difficile	UCGUACUCUCCGGUAGGUAGGUCGCUUGAGCCUAUUGGUG
#=GR bacteria.C.difficile SS  aa<<<<<<<<<<<<.....<<<<......>>>>>>>>...

bacteria.C.difficile	ACAAUAGGCCUAGAAAGAUGAUUAUCUAAUACAGAACUCC
#=GR bacteria.C.difficile SS  .<<<<<<<<..........bbbbbbb..........<<<<

bacteria.C.difficile	GCUUAUAGCCUUGCUUAAUUA
#=GR bacteria.C.difficile SS	<<<<.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.C.diphtheriae DE converted from brown dataset ct file

bacteria.C.diphtheriae		UGAGCCGGCUGGGCGAUCGCGACUUUGCGUACCACAUGC
#=GR bacteria.C.diphtheriae SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>..

bacteria.C.diphtheriae	GAUGAACAUGGUGGCGCAAGGACGAGGAAAGUCCGGACUC
#=GR bacteria.C.diphtheriae SS  .....<<<<<<<<.<<<<<<<<<<....BBB.BBBBB>>>

bacteria.C.diphtheriae	CACAGAGCACGGUGAUUGUUAACAACAACCCGGGGUGACC
#=GR bacteria.C.diphtheriae SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<<

bacteria.C.diphtheriae	CGCGGGCAAGUGCAACAGAAAGUAAACCGCCUAGAAUUUU
#=GR bacteria.C.diphtheriae SS  <<.<>>...>>>>>............>>>>>>>>>>...<

bacteria.C.diphtheriae	UCUAGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGC
#=GR bacteria.C.diphtheriae SS  <<<<<<<..<<.......>>>>>>.......<<<<<<>>>

bacteria.C.diphtheriae	GAGGUAGGUGACUACCUCGGCUAGGUAAACCCCACUGGGA
#=GR bacteria.C.diphtheriae SS  >>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<<<<<<

bacteria.C.diphtheriae	GCAAGGCAUUAGGGCGUACCGUCGUUUCAGACGGUAUGUC
#=GR bacteria.C.diphtheriae SS  <...>>>....>>>>>>>>.>>>......<<<.<<<<<<<

bacteria.C.diphtheriae	UGCACGAACGCUUGAAGGCUGCUCGCCUGAGUUCGUGGGU
#=GR bacteria.C.diphtheriae SS  <..>>>>>>....>>>>>>.aaaa<<<<<<<<<<<<....

bacteria.C.diphtheriae	AGCUGCUUGAGGCGGCCAGUGAUGGUUUCGUCCAGAUGGA
#=GR bacteria.C.diphtheriae SS  .<<<......>>>>>>>>....<<<<<<.<<.........

bacteria.C.diphtheriae	UGAUCGCCGCUGAUCUCCGCUUGUCGGGGGUGAGUACAGA
#=GR bacteria.C.diphtheriae SS  .<<<<<<<>>>>>>>>>>>.....<<<<<<<<<<<.....

bacteria.C.diphtheriae	AUCCGGCUUAUAUGCUGGCUCAUUCG
#=GR bacteria.C.diphtheriae SS	.bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.C.hydrogenoformans DE converted from brown dataset ct file

bacteria.C.hydrogenoformans		AAAAGCGAGUAAGCCGGAUGACCGCGGGGAGAAAUCCCU
#=GR bacteria.C.hydrogenoformans SS  .....>>>>>>>>>>>BBBBBBB.>>>>>>....<<<<<

bacteria.C.hydrogenoformans	GAGGAAAGUCCGAGCUCCAUAGGGCAGGAUGCCGGGUAAC
#=GR bacteria.C.hydrogenoformans SS  <....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>....

bacteria.C.hydrogenoformans	GCCCGGUGGAGGCGACUCCAAGGAAAGUGCCACAGAAACA
#=GR bacteria.C.hydrogenoformans SS  .<<<<<>>>>>....<<<<.<>>...>>>>>.........

bacteria.C.hydrogenoformans	AACCGCCGGUAAGGGUGGAAAGGUGAGGUAAGAGCUCACC
#=GR bacteria.C.hydrogenoformans SS  ..>>>>><<<..<<.......>>>>>>.......<<<<<<

bacteria.C.hydrogenoformans	AGCGGGCAGGUAACUGUCCGGCUAGGCAAACCCCAUCCGG
#=GR bacteria.C.hydrogenoformans SS  >>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<<<<<<

bacteria.C.hydrogenoformans	AGCAAGACCAAAUAGGGGGACUAUAGAGUGGCCCGCUCUG
#=GR bacteria.C.hydrogenoformans SS  <<...>>>>......>>>>>>...>>>>>.aaaa<<<<<<

bacteria.C.hydrogenoformans	UCCCCGGGUUGGUCGCUUAAGGCCUCUGGUGACAGAGGUC
#=GR bacteria.C.hydrogenoformans SS  <<<<<.....<<<<......>>>>>>>>....<<<<<<<<

bacteria.C.hydrogenoformans	UCAGAUAGAUGGUCAUCCUCGACAGAACUCGGCUUACAGG
#=GR bacteria.C.hydrogenoformans SS  ..........bbbbbbb..........<<<<<<<<.<.<<

bacteria.C.hydrogenoformans	CUUACUCGCUUG
#=GR bacteria.C.hydrogenoformans SS	<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.C.jejuni DE converted from brown dataset ct file

bacteria.C.jejuni		AAGCAUAGUAAAUGCUCGCUUCUUUUUAGGAGAGGAAAG
#=GR bacteria.C.jejuni SS  >>>>>>>>>>BBBBBBB.>>>>.....<<<.<....>>>

bacteria.C.jejuni	UCCGAGCUGCUAAAGACAAACAUUCCAUCUAACAGAUGGC
#=GR bacteria.C.jejuni SS  .>>>>>>>>>....AAAA.>>>>>>>>>>.....<<<<<>

bacteria.C.jejuni	UAGGGUAACCUAAGGGAUAGUGCAACAGAAAGAAAACUAC
#=GR bacteria.C.jejuni SS  >>>>....<<<<.<>>...>>>>>............>>>>

bacteria.C.jejuni	CACGCAAGUGGAAAAGGUGAAACGGCGGGGUAAAAGCCCA
#=GR bacteria.C.jejuni SS  >>>....<<<<<..<<.......>>>>>>.......<<<<

bacteria.C.jejuni	CCAGCGAUUUUGGUAACAAUUUCGGCUAUGUAAACCCAAU
#=GR bacteria.C.jejuni SS  <<>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<

bacteria.C.jejuni	GUGCAGCAAGAAGGGAUGGUUAGCGUCUUUGUUUUAACCC
#=GR bacteria.C.jejuni SS  <<<<<<...>>>>>>>>>>.>>>.aaaa<<<..<<<<<<<

bacteria.C.jejuni	UUCGCUUGAUUUUGUUUGCAAAAACAAAACUAGAUAAAUG
#=GR bacteria.C.jejuni SS  <<<......>>>>>>>>....<<<<<<<<..........b

bacteria.C.jejuni	AGCAUUCAAGACAGAACUCGGCUUAUCGCUAUGCUUUUU
#=GR bacteria.C.jejuni SS	bbbbbb..........<<<<<<<<.<.<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS bacteria.C.limicola DE converted from brown dataset ct file

bacteria.C.limicola		AAACCGCAAGUGUGCAGUCGCUGUAUGGCUUGACGCUGU
#=GR bacteria.C.limicola SS  >>>>>>.>>>>>>>>>>>>.>>>>>>>>>.....<<<<<

bacteria.C.limicola	GCAGAGGAAAGUCCGAACUUCACAGGGCAGGGUGCCGGUC
#=GR bacteria.C.limicola SS  <<<<....BBB.BBBBB>>>>...AAAA.>>>.>>>>>>>

bacteria.C.limicola	GAGAACCUGGUUCAAGGCCGGGGGCAGCGGUGCAAACCGU
#=GR bacteria.C.limicola SS  ..>>>>...<<<<..<<<<<<>>>>>>>>>>....<<<<.

bacteria.C.limicola	CUGUCACAGAGAGUGCAACAGAAAGCAAACCGCCCCGGCU
#=GR bacteria.C.limicola SS  <<<<<.<>>...>>>>>............>>>>>>>>>>.

bacteria.C.limicola	CCGGCCGGAGUAAGGGUGAAAAGGCGGUGUAAGAGACCAC
#=GR bacteria.C.limicola SS  ...<<<<<<<<..<<.......>>>>>>.......<<<<<

bacteria.C.limicola	CAGGUGCGUCAGCAAUGCCGUACGCUAUGAAAACCUCCCC
#=GR bacteria.C.limicola SS  <>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<<

bacteria.C.limicola	GAAGCAAGGCCAAAUAUGGAAGCUUUUUCCGCAAGGAAAG
#=GR bacteria.C.limicola SS  <<<<...>>>>......>>>>>>>>>>>>>....<<<<<<

bacteria.C.limicola	AAGGGUUGCCCGCCCAACGUUUCCGGGUAGGCCGCAUCAG
#=GR bacteria.C.limicola SS  <.>>>>.aaaa<<<<...<<<<<<.....<<<<.......

bacteria.C.limicola	AUAAAUGACUGCAGCUUCAUCACUCGAUGAUGAUUCACAG
#=GR bacteria.C.limicola SS  ......<<<<<<<>>>>>>>>>.....<<<<<<<<<....

bacteria.C.limicola	AAUUCGGCUUACAGCUUCGGUUUCAGC
#=GR bacteria.C.limicola SS	..bbbbbbbb.<.<<<<<<<<<<....

//

# STOCKHOLM 1.0

#=GS bacteria.C.pecorum-IPA DE converted from brown dataset ct file

bacteria.C.pecorum-IPA		GAGGAAAGUCCGGACUUCGCAGAAAAAGGUGCCAGUGAA
#=GR bacteria.C.pecorum-IPA SS  ..............>>>>...AAAA.>>>>>>>>>>...

bacteria.C.pecorum-IPA	AAACUGGGGGCCGUAAGGCUACGGAAAGUGUAACAGAAAA
#=GR bacteria.C.pecorum-IPA SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.C.pecorum-IPA	CAAACCGCUAAUUCUACCUAGGUAAGAUUAGACAGGAUGA
#=GR bacteria.C.pecorum-IPA SS  ....>>>>>>>>>>>>>....<<<<<<<<<<<..<<....

bacteria.C.pecorum-IPA	AAAUGUCGAGCUUAUGGCUCGACCUCUUUGUGGAAACACA
#=GR bacteria.C.pecorum-IPA SS  ....>>>>>>.......<<<<<<>>>>>>>>>....<<<<

bacteria.C.pecorum-IPA	AGGACGCUGCAAACCCCACCUGAAGCAAGAAAGAGUUCGU
#=GR bacteria.C.pecorum-IPA SS  <<<<.<.<<<..<<<<<<<<<<<<<...>>>>>>>>>>..

bacteria.C.pecorum-IPA	UUCAGUUUUUCGCUCAGGAACUCUUAGAGUCGCUCGAGGA
#=GR bacteria.C.pecorum-IPA SS  ...>>>.aaaa<<<...<<<<<<<<....<<.........

bacteria.C.pecorum-IPA	UUUUGGUGAC
#=GR bacteria.C.pecorum-IPA SS	....>....<

//
# STOCKHOLM 1.0

#=GS bacteria.C.pneumoniae-AR39 DE converted from brown dataset ct file

bacteria.C.pneumoniae-AR39		AUCGGAAGAGAAAGGCAACCGCUGUUUAUAUUUCUCAAA
#=GR bacteria.C.pneumoniae-AR39 SS  ..>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>......

bacteria.C.pneumoniae-AR39	AAAUAUAAAGAGAGGAAAGUCUGGACUUCAUAAGAGAAGA
#=GR bacteria.C.pneumoniae-AR39 SS  <<<<<<<<<<<<....BBB.BBBBB>>>>...AAAA.>>>

bacteria.C.pneumoniae-AR39	UACUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUG
#=GR bacteria.C.pneumoniae-AR39 SS  >>>>>>>.....<<<<<>>>>>....<<<<.<>>...>>>

bacteria.C.pneumoniae-AR39	CAACAGAAAACACUCCGCUAUAAAAUUUAUUUUAUAGACA
#=GR bacteria.C.pneumoniae-AR39 SS  >>............>>>>>>>>>>>....<<<<<<<<<..

bacteria.C.pneumoniae-AR39	GGCUGAAAAUUCCUACUUUAGGAGUAGGAGCCAUUAAGGU
#=GR bacteria.C.pneumoniae-AR39 SS  <<........>>>>>>.......<<<<<<>>>>>>>>>..

bacteria.C.pneumoniae-AR39	GACUUAAUAGGCAUGCAAACCCUAUCUGAAGCAAGAGAAA
#=GR bacteria.C.pneumoniae-AR39 SS  ..<<<<<<<<.<.<<<..<<<<<<<<<<<<<...>>.>>>

bacteria.C.pneumoniae-AR39	AAAGCUUUUUGUGUCUGCAAAUGUGAGAGGAAUUCCUCCC
#=GR bacteria.C.pneumoniae-AR39 SS  >>.....>>>>.aaaa.<<<<.>>>>>>>>....<<<<<<

bacteria.C.pneumoniae-AR39	AUAGGCUUUUUCGAAAUCGCUUGAGGGAUCUAGUAAUAGC
#=GR bacteria.C.pneumoniae-AR39 SS  <<....<<<<<.....<<......>>>>>>>>....<<<<

bacteria.C.pneumoniae-AR39	UCCCCUAGAUGAAUGGUUGCCCUUAGGAUAGUUCGCAAGA
#=GR bacteria.C.pneumoniae-AR39 SS  <<<<..........<<<<<<<>>>>>>>>>>>>>....<<

bacteria.C.pneumoniae-AR39	GCUAUCUUAUAGACAGAAUCCAGCUUACCCUCUCUUCCGA
#=GR bacteria.C.pneumoniae-AR39 SS  <<<<<<<<<.<<......bbbbbbbb.<.<<<<<<<<<<.

bacteria.C.pneumoniae-AR39	UAUUUUU
#=GR bacteria.C.pneumoniae-AR39 SS	.......

//
# STOCKHOLM 1.0

#=GS bacteria.C.sporogenes DE converted from brown dataset ct file

bacteria.C.sporogenes		GAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCUGGGUAA
#=GR bacteria.C.sporogenes SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.C.sporogenes	UACCCAGUGGAGGCGACUUUAAGGAAAGUGCAACAGAGAU
#=GR bacteria.C.sporogenes SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.C.sporogenes	AUACCGCCAGAUUUAUCUGGUAAGGGUGGAAAGGCGAGGU
#=GR bacteria.C.sporogenes SS  ...>>>>>>>>....<<<<<<..<<.......>>>>>>..

bacteria.C.sporogenes	AAGAGCUCACCAGCGUAUAGGUGACUAUACGGCUAUGUGA
#=GR bacteria.C.sporogenes SS  .....<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..

bacteria.C.sporogenes	ACCCCAUCUGGAGCAAGAUCGAAUAGGAGAGCAGGAAACU
#=GR bacteria.C.sporogenes SS  <<<<<<<<<<<<<...>>>>......>>>>>>.>>>>>..

bacteria.C.sporogenes	UUGGUUUCCAGGGGUGGCCCGUCCCGCUCUCGGGUAGUAU
#=GR bacteria.C.sporogenes SS  ....<<<<<.>>>>>.aaaa<<<<<<<<<<<......<<<

bacteria.C.sporogenes	CGCUGGAGCCUAUUGGUAACAAUAGGCCUAGAUAGAUGAU
#=GR bacteria.C.sporogenes SS  <......>>>>>>>>....<<<<<<<<.............

bacteria.C.sporogenes	UGUCUAACACAGAAUCCGGCUUA
#=GR bacteria.C.sporogenes SS	..............<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.C.testosteroni DE converted from brown dataset ct file

bacteria.C.testosteroni		GAGGAAAGUCCGGGCUGCAUAGGGCGGCGUAGCAGCUAA
#=GR bacteria.C.testosteroni SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.C.testosteroni	CAGCUGUCCACCGUGAGGUGAGGAUCAGAGCAACAGAGAC
#=GR bacteria.C.testosteroni SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.C.testosteroni	GAGUCUGGCAGGAGUGCCGCAAGGCAGACCAACCAGGGUG
#=GR bacteria.C.testosteroni SS  ...>>>>>>>>>>>>>>>....<<<<<<<<<<<<<<<...

bacteria.C.testosteroni	AAACGGGCAAUCUCUACGCGCAGCAAUACCAAGUAGGCAC
#=GR bacteria.C.testosteroni SS  .....<<<..<<<<<<<<<<<<<...>>>>......>>>>

bacteria.C.testosteroni	ACGUUGACGGGGCCCCCGGAGUGUGCGGGUAGGUAGCACC
#=GR bacteria.C.testosteroni SS  >>...>>>>>.aaaa<<<<<<<<<<<.....<<<<.....

bacteria.C.testosteroni	GAGCCAUCAGGCGACUGAUGGCCAAGAUUAAUGGCGGUCA
#=GR bacteria.C.testosteroni SS  ..>>>>>>>>....<<<<<<<<.................>

bacteria.C.testosteroni	CAUGGCGGGCAACCGUUGUGCACAGAAUCCGGCUUA
#=GR bacteria.C.testosteroni SS	>>>>>>>>....<<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.CPA49 DE converted from brown dataset ct file

bacteria.CPA49		GAGGAAAGUCCGGGCAACACAGAGCACCAUACUUCCUAA
#=GR bacteria.CPA49 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPA49	CGGGAAGGCUUUCUGCUGGUGACGGCAGAAAGACAGACAG
#=GR bacteria.CPA49 SS  ..<<<<<>>>>>>>>>.>.....<<<<<<<<<.<>>...>

bacteria.CPA49	GGCCACAGAAACAAACCGCCCUUUGACUUCAAGGCUUGCC
#=GR bacteria.CPA49 SS  >>>>...........>>>>>>>>>>>>>>>>>>>.....<

bacteria.CPA49	AAGAACGUCGAAAGGUAAGGGUGAAAAGGUGGGGUAAGAG
#=GR bacteria.CPA49 SS  <<<<<<<<<<<<<<<<..<<.......>>>>>>.......

bacteria.CPA49	CCCACCGUUCCGAUGGUGACAUCGGAAGCUAGGCAAACCU
#=GR bacteria.CPA49 SS  <<<<<<>>>>>>>>>....<<<<<<<<.<..<<<..<<<<

bacteria.CPA49	UAUGGGUUGAAAGGUCAAAUAGGCCCCGGGCAAAGAGCUG
#=GR bacteria.CPA49 SS  <<<<<<<<<...>>>>......>>>>>>.......>>>.a

bacteria.CPA49	CUCGUUCGAUUUCUCCUUCGGGAGGAUUCCGGGGUGGGUA
#=GR bacteria.CPA49 SS  aaa<<.<>>>>>>>>>....<<<<<<<<<<<<<<<.....

bacteria.CPA49	GAUCGAUGGAUCCCGAUUGCAAAGUCGGGACUAGAUAAAU
#=GR bacteria.CPA49 SS  <<<<......>>>>>>>>....<<<<<<<<..........

bacteria.CPA49	GGCAAGAGCCCAUUUUCCCUCGUGGAAAAUGGGAUACAGA
#=GR bacteria.CPA49 SS  .......>>>>>>>>>>>.....<<<<<<<<<<.<.....

bacteria.CPA49	ACCCGGCUUAU
#=GR bacteria.CPA49 SS	.<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPA56 DE converted from brown dataset ct file

bacteria.CPA56		GAGGAAAGUCCGGGCAACACAGAGCAUCGUACUUCCUAA
#=GR bacteria.CPA56 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPA56	CGGGAAGGAUUCCGCUUUAGCGGGAGACAGAAAGUGCCAC
#=GR bacteria.CPA56 SS  ..<<<<<>>>>>>>>....<<<<<<<.<>>...>>>>>..

bacteria.CPA56	AGAAAACAAACUACUCGCGCUUAGGUGUGAGAAAAGGUGA
#=GR bacteria.CPA56 SS  ..........>>>>>>>.>>.....<<<<<<<..<<....

bacteria.CPA56	AAAGGUGGGGUAAGAGCCCACCGGUCUUGAAAGUGAUUUC
#=GR bacteria.CPA56 SS  ...>>>>>>.......<<<<<<>>>>.>>>>>....<<<<

bacteria.CPA56	AGAUGCAUGGCAAACCUUACGAGUUGAAAGGCCAAAUAGG
#=GR bacteria.CPA56 SS  <<<<.<..<<<..<<<<<<<<<<<<<...>>>>......>

bacteria.CPA56	UCACGCUCACGAAAGUGAUUAGCUGCUCGCUGAUAGUGCA
#=GR bacteria.CPA56 SS  >>>>>..>>>....<<<>>>>>>.aaaa<<<<<<>>>...

bacteria.CPA56	AGCUGGCGUGAUUGGGUAGGCUGCUUGAUUCUAAUGGCGA
#=GR bacteria.CPA56 SS  .<<<...<<<<<<.....<<<<......>>>>>>>>....

bacteria.CPA56	CAUUAGGGCUAGAUAAAUGAUAGGCACUUCGAAAGAGGAA
#=GR bacteria.CPA56 SS  <<<<<<<<.................>>>>>....<<<<<.

bacteria.CPA56	CAGAACCCGGCUUAU
#=GR bacteria.CPA56 SS	.....<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPA58 DE converted from brown dataset ct file

bacteria.CPA58		GAGGAAAGUCCGGGCGCCGUCGAAACGCGGUGGUGGGUA
#=GR bacteria.CPA58 SS  .....>>>.>>>>>>>>>.AAAAAA.>>>>>>>>>>...

bacteria.CPA58	ACACCCACCGGCCGCGAGGCCAGGGAAAGUGCAACAGAAA
#=GR bacteria.CPA58 SS  ..<<<<<>>>>>.....<<<<.<>>...>>>>>.......

bacteria.CPA58	GCAGACCGCCAUCGGGCCGGGGCAACCCAGCCUGAGGGUA
#=GR bacteria.CPA58 SS  .....>>>>>>>>>>>>>>>>....<<<<<<<<<<<<<<.

bacteria.CPA58	AGGGUGAAACGGUGAGGUAAGAGCUCACCAGCAGGCCGGG
#=GR bacteria.CPA58 SS  .<<.......>>>>>>.......<<<<<<>>>>>>>>>>.

bacteria.CPA58	UAACCGGUCUGGCUAGGCAAACCCCACCGGGCGCAAGGCC
#=GR bacteria.CPA58 SS  ...<<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>

bacteria.CPA58	AAGCAGGGAGCAUGGGUGGCGGCAGCGAAUCCGUUCGCCA
#=GR bacteria.CPA58 SS  .....>>>>>...>>>>>>>>>>>>>>>>....<<<<<<<

bacteria.CPA58	CCGGCCGCCCACGGAUUGUUUCGAGCCGUAACAGACUUCC
#=GR bacteria.CPA58 SS  <<.<<<<<<<>>>>...aaaaaa..<<<<......<<<<<

bacteria.CPA58	GGGUAGGCUGCUCGAGACGCCGAGUAAUCGUCGUCCUAGA
#=GR bacteria.CPA58 SS  .....<<<<......>>>>>>>>....<<<<<<<<.....

bacteria.CPA58	GAAAUGGCCACCGCCCGUCGUCGCCCUCCGGGGCUUCGAC
#=GR bacteria.CPA58 SS  ............>>>>>>>>>>>>>>....<<<<<<<<<<

bacteria.CPA58	GGGAACAGAAUCCGGCUUAU
#=GR bacteria.CPA58 SS	<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPA59 DE converted from brown dataset ct file

bacteria.CPA59		GAGGAAAGUCCGGGCUCCACAGAGCAGAACGCCGGGUAA
#=GR bacteria.CPA59 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPA59	CACCCGGUGGGGGAAACCCCGAGGAAAGUGCCACAGAAAA
#=GR bacteria.CPA59 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.CPA59	CAGACCGCCUUCGCCGCGCGAGCGGCGCGGGUAAGGGUGA
#=GR bacteria.CPA59 SS  ....>>>>>>>>>>>>>....<<<<<<<<<<<..<<....

bacteria.CPA59	AACGGUGGGGUAAGAGCCCACCGCGCAGACGGUAACGGAU
#=GR bacteria.CPA59 SS  ...>>>>>>.......<<<<<<>>>>>>>>>....<<<<<

bacteria.CPA59	GCGGCACGGCAAACCCCGUUCGGAGCAAGGCCAUGUAUAG
#=GR bacteria.CPA59 SS  <<<.<..<<<..<<<<<<<<<<<<<...>>>>......>>

bacteria.CPA59	GAACGUUCGAGGGCUGCUCGCCCGAGUUCCAGGGUAGGCC
#=GR bacteria.CPA59 SS  >>>>....>>>>>>.aaaa<<<<<<<<<<<<.....<<<<

bacteria.CPA59	GCUCGAGGCGCACGGUAACGGGCGUCCCAGAUGAAUGAUC
#=GR bacteria.CPA59 SS  ......>>>>>>>>....<<<<<<<<..............

bacteria.CPA59	GCCAAGUGUCCCCGGACACUCACAGAACCCGGCUUAU
#=GR bacteria.CPA59 SS	...>>>>>>>....<<<<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPA61 DE converted from brown dataset ct file

bacteria.CPA61		GAGGAAAGUCCGGGCACCACAGGGCAGGAUGCCGCACGA
#=GR bacteria.CPA61 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>>..

bacteria.CPA61	GCUUCACCGCAAGUGCGGGCGUCGCGUUUCAAGGCGCGGC
#=GR bacteria.CPA61 SS  >>......<<..<<<<<<>>>>>>>>>>....<<<<<<<<

bacteria.CPA61	GACGGACAGUGUCACAGAGAAUAUACCGCCCUCCGUGGUU
#=GR bacteria.CPA61 SS  <.<>>...>>>>>............>>>>>>>>>>>>>>>

bacteria.CPA61	CGGCGAAAGCCGGGCUUCGAAGGGUAAGGGUGAAAAGGUG
#=GR bacteria.CPA61 SS  >>>>....<<<<<<<<<<<<<<<<<..<<.......>>>>

bacteria.CPA61	GGGUAAGAGCCCACCGCGCCGCCAGCAAUGGCGGCGGCAC
#=GR bacteria.CPA61 SS  >>.......<<<<<<>>>>>>>>>....<<<<<<<<.<..

bacteria.CPA61	GAAAAACCCCUUCCGGUGCAAGGCAAAAUAGGUGACUGGG
#=GR bacteria.CPA61 SS  <<<..<<<<<<<<<<<<<...>>>>......>>>>>>>>>

bacteria.CPA61	CGGCCCGUCCGAUAGUCACGGGUAUGCCGCAUCCGGCGCC
#=GR bacteria.CPA61 SS  >.aaaa<<<<<...<<<<<.....<<<<...>>>>>>>..

bacteria.CPA61	GCUCGCGCAAGUGAGCGGCGCGGGACGAGGCCGCCGCGAG
#=GR bacteria.CPA61 SS  ..................<<<<<<<...>>>>>>>....<

bacteria.CPA61	GCGGCCCGAGAGAAAUGACGACUGAAGCGCCGCAAGGCGU
#=GR bacteria.CPA61 SS  <<<<<<.................>>>>>>>>....<<<<<

bacteria.CPA61	GGAACAGAACCCGGCUU
#=GR bacteria.CPA61 SS	<<<......<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.CPA62 DE converted from brown dataset ct file

bacteria.CPA62		GAGGAAAGUCCGGGCUCCACGGAUCAACGGUGCCGGAUA
#=GR bacteria.CPA62 SS  .....>>>.>>>>>>>>>..AAAAAA.>>>>>>>>>>..

bacteria.CPA62	ACGUCCGGCGGGGGCAACCCCAGGGAAAGUGCCACAGAAA
#=GR bacteria.CPA62 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.CPA62	AGUAAACCGCCACGGGCGCGUUGCGUUUAGCCUGCGGCAA
#=GR bacteria.CPA62 SS  ......>>>>>>>>>>>............<<<<<<<<<..

bacteria.CPA62	GGGUGAAACGGUGCGGUAAGAGCGCACCGCGUUUCCGGCA
#=GR bacteria.CPA62 SS  <<.......>>>>>>.......<<<<<<>>>>>>>>>...

bacteria.CPA62	ACGGAAGCGGCAGGGCAAACCCCACCGGGAGCAAAACCGA
#=GR bacteria.CPA62 SS  .<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>..

bacteria.CPA62	AUAGGAACGGCGCGCGUUUCCGCGCAAGCGGGAAAGCAGA
#=GR bacteria.CPA62 SS  ....>>>>>>>..>>>>>>>>>>....<<<<<<<<<<.>>

bacteria.CPA62	UCGAUCCGGAUCAGCCGUUCGGGUAGGUCGCUUCAGGCAC
#=GR bacteria.CPA62 SS  >>aaaaaa<<<<.<<<<<<<.....<<<<......>>>>>

bacteria.CPA62	ACAGCAAUCUGUGCCGCAGAGGAAUGGCCGUCACGUGCUG
#=GR bacteria.CPA62 SS  >>>....<<<<<<<<.................>>>>>>>>

bacteria.CPA62	CGUUAUCGCGCAGCGCCAUACAGAACCCGGCUUAC
#=GR bacteria.CPA62 SS	>>>....<<<<<<<<<.<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPA63 DE converted from brown dataset ct file

bacteria.CPA63		GAGGAAAGUCCGGGCUCCAAGGGCAAAGCGCCAGGUAAC
#=GR bacteria.CPA63 SS  .....>>>.>>>>>>>>>..AAAA.>>>>>>>>>>....

bacteria.CPA63	GCCUGGGGGACGUGAGUCCACGGAAAGUGCAACAGAAAGC
#=GR bacteria.CPA63 SS  .<<<<<>>>>>....<<<<.<>>...>>>>>.........

bacteria.CPA63	AAACCGCCUAAGUUUUUCGCAAGAAAAGCCGGUAAGGGUG
#=GR bacteria.CPA63 SS  ...>>>>>...>>>>>>>....<<<<<<<.<<<..<<...

bacteria.CPA63	AAAGGGUGCGGUAAGAGCGCACCGCGUCGGUGGUAACACU
#=GR bacteria.CPA63 SS  ....>>>>>>.......<<<<<<>>>>>>>>>....<<<.

bacteria.CPA63	CGACGGCACGGUAAACCCCGCUCGGAGCAAGACCAAAUAG
#=GR bacteria.CPA63 SS  <<<<<.<..<<<..<<<<<<<<<<<<<...>>>>......

bacteria.CPA63	GGGAACAAGUGGUCGUCUCUUCGGAGAUAGUCCGCACGCA
#=GR bacteria.CPA63 SS  >>>>.>>>>>>>>>>>>>>....<<<<<<.<<<<<..>>>

bacteria.CPA63	UGGCCCAUGCAGGUUCCCGGGUAGGUCGCUUGAGGUCUGU
#=GR bacteria.CPA63 SS  >.aaaa<<<<<<<.<<<<.....<<<<......>>>>>>>

bacteria.CPA63	GGUGACACAGAUCCCAGAGGAAUGAUUGUUCACGACAGAA
#=GR bacteria.CPA63 SS  >....<<<<<<<<...........................

bacteria.CPA63	CCCGGCUUA
#=GR bacteria.CPA63 SS	<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.CPB147 DE converted from brown dataset ct file

bacteria.CPB147		GAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAA
#=GR bacteria.CPB147 SS  .........>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPB147	CGCCUGGGGGGUGUAACAACCUACGACCAGUGCAACAGAG
#=GR bacteria.CPB147 SS  ..<<<<<>>>>>......<<<<.<>>...>>>>>......

bacteria.CPB147	AGCAAACCGCCGAUGGCCCUUUAUGGGAUCAGGUAAGGGU
#=GR bacteria.CPB147 SS  ......>>>>>..>>>>>>.....<<<.<<<<<<..<<..

bacteria.CPB147	GAAAGGGUGCGGUAAGAGCGCACCGCGCGACUGGCAACAG
#=GR bacteria.CPB147 SS  .....>>>>>>.......<<<<<<>>>>>>>>>....<<<

bacteria.CPB147	UUCGUGGCACGGUAAACUCCACCCGGAGCAAGGCCAAAUA
#=GR bacteria.CPB147 SS  .<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>.....

bacteria.CPB147	GGGGUUCACAUGGUACGGCCCGUACUGAACCCGGGUAGGC
#=GR bacteria.CPB147 SS  .>>>>.>....>>>>>.aaaa<<<<<<.<<<<.....<<<

bacteria.CPB147	UGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAUGAAUGAC
#=GR bacteria.CPB147 SS  <......>>>>>>>>....<<<<<<<<.............

bacteria.CPB147	UGUCCACGACAGAAUCCGG
#=GR bacteria.CPB147 SS	..............<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.CPB149 DE converted from brown dataset ct file

bacteria.CPB149		GAGGAAAGUCCGGGCUUCAUGAAAACACGGCGCCGGAUA
#=GR bacteria.CPB149 SS  ..............>>>>.AAAAAAA.>>>>>>>>>>..

bacteria.CPB149	ACAUCCGGGGGGCGCAAGCCUACGGAAAGUGCAACAGAAA
#=GR bacteria.CPB149 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.CPB149	ACAAACCGCCUUGCUUGGCCUCUGGCGAAGCAGGGUAAGG
#=GR bacteria.CPB149 SS  .....>>>>>>>>>>>>>>>...<<<<<<<<<<<<<..<<

bacteria.CPB149	GUGAAACGGUGCGGUAAGAGCGCACCAGCGUCCUGGUAAC
#=GR bacteria.CPB149 SS  .......>>>>>>.......<<<<<<>>>>>>>>>....<

bacteria.CPB149	AGGGCGGCUUGGCAAACCCCGCCGGAAGCAAGGCCAAAUA
#=GR bacteria.CPB149 SS  <<<<<<.<<.<<<..<<<<<<<<<<<<<............

bacteria.CPB149	GGGAAGGCAGGAUACUUCGGUAUCAGGGUCCGUUUUCAGA
#=GR bacteria.CPB149 SS  >>>>>>>>..>>>>>....<<<<<...>>>.aaaaaaa<<

bacteria.CPB149	CAAGCCGAAUUC
#=GR bacteria.CPB149 SS	<..<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.CPB70 DE converted from brown dataset ct file

bacteria.CPB70		GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAA
#=GR bacteria.CPB70 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPB70	CGGCAACCCGAGGCGACUCGCGGGAAAGUGCCACAGAGAA
#=GR bacteria.CPB70 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.CPB70	CAGACCGCCGCGGCGACUUCGUCGCUGCGGUAAGGGUGAA
#=GR bacteria.CPB70 SS  ....>>>>>>>>>>>>>...<<<<<<<<<<<..<<.....

bacteria.CPB70	ACGGUGGUGUAAGAGACCACCAGCGGGCUGGGCGACCAGC
#=GR bacteria.CPB70 SS  ..>>>>>>.......<<<<<<>>>>>>>>>>....<<<<<

bacteria.CPB70	UCGGCUUGGUAAACCCCACCCGGAGCAAGGUCAAAAGGGC
#=GR bacteria.CPB70 SS  <<<.<<.<<<..<<<<<<<<<<<<<...>>>>......>>

bacteria.CPB70	AGGUUCGCCUGUCUGCGCAAGCGUUCGAGGGCGGCCCGCC
#=GR bacteria.CPB70 SS  >>>>.........>>>....<<<...>>>>>>.aaaa<<<

bacteria.CPB70	CGAGCUUGCGGGUAGACCGCUAGAACCGGUCGGCAACGGC
#=GR bacteria.CPB70 SS  <<<<<<<<<.....<<<<......>>>>>>>>....<<<<

bacteria.CPB70	CGGUCCAGAUGGAUGGUCGCCACUGCGCGAGAGCGCGGUA
#=GR bacteria.CPB70 SS  <<<<.................>>>>>>>....<<<<<<<.

bacteria.CPB70	CAGAAUCCGGCUUAC
#=GR bacteria.CPB70 SS	.....<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPB72 DE converted from brown dataset ct file

bacteria.CPB72		GAGGAAAGUCCGGGCUCCACAGGAUGCCGUGGUGGAUAA
#=GR bacteria.CPB72 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPB72	CGUCCACCGACCGCAAGGUUCGGGAAAGUGCAACAGAGAA
#=GR bacteria.CPB72 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.CPB72	CAGACCGCCGAUCGCUGCGGGGCAACUCGCGGCGAGGUAA
#=GR bacteria.CPB72 SS  ....>>>>>..>>>>>>>>>>....<<<<<<<<<<<<<..

bacteria.CPB72	GGGUGAAACGGUGAGGUAAGAGCUCACCAGCGGGUCGGGC
#=GR bacteria.CPB72 SS  <<.......>>>>>>.......<<<<<<>>>>>>>>>>..

bacteria.CPB72	GACCGACUCGGCUCGGCAAACCCCACGGGGAGCAAGGCCA
#=GR bacteria.CPB72 SS  ..<<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>.

bacteria.CPB72	AGCAGAGAGGAGACUUCGGGCGGCUUCGGUCACUCGGCGU
#=GR bacteria.CPB72 SS  ....>>>>>..>>>>>>>>>>>>>....<<<<<<<<<<<<

bacteria.CPB72	CGCGGGGCGAUUCGUUCCGUUAUCACUCUCGGGUAGGCUG
#=GR bacteria.CPB72 SS  <.>>>>>>.aaaa<<<<<<......<<<<<.....<<<<.

bacteria.CPB72	CCAGAGGCGGCGGGCAACCGUCGUCCUAGAGAAAUGAUCG
#=GR bacteria.CPB72 SS  .....>>>>>>>>....<<<<<<<<...............

bacteria.CPB72	UCGCGACGGCGCAGGCCGUCGGACAGAACCCGGCUUAC
#=GR bacteria.CPB72 SS	..>>>>>>>>....<<<<<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.CPB7776 DE converted from brown dataset ct file

bacteria.CPB7776		GAGGAAAGUCCGGGCAACAUAGAGCAGUGUACUUCCUAA
#=GR bacteria.CPB7776 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.CPB7776	CGGGAAGGUAUCCCGCCUUUGGCGGGAUAACAGACAGUGC
#=GR bacteria.CPB7776 SS  ..<<<<<>>>>>>>>>>...<<<<<<<<<.<>>...>>>>

bacteria.CPB7776	CACAGAAAACAAACUACCCAUUCCCGAUUUUAUCGGGAGG
#=GR bacteria.CPB7776 SS  >............>>>>>..>>>>>>>>...<<<<<<.<<

bacteria.CPB7776	GGAAAAGGUGAAAAGGUGAGGUAAGAGCUCACCGGUUUGA
#=GR bacteria.CPB7776 SS  <<<..<<.......>>>>>>.......<<<<<<>>>>>>>

bacteria.CPB7776	UGGUGACAUCAGGCGCAUGGUAAACCUUACGCGUUGAAAG
#=GR bacteria.CPB7776 SS  >>....<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>

bacteria.CPB7776	GUCAAAUAAGUCACGAUCAUUCACUUGGUUAGCGGCUCGU
#=GR bacteria.CPB7776 SS  >>>......>>>>>>>>>>......<<<<>>>>.aaaa<<

bacteria.CPB7776	UAAUUAAGUUGAUUCGUCAGCUUAGUCGUGACGGGUAGAC
#=GR bacteria.CPB7776 SS  <<>>>>>>>>>>....<<<<<<<<<<<<<<<<.....<<<

bacteria.CPB7776	UGAUUGAACCUGAUUGCGAAGUCAGGGCUAGAUAAAUGAU
#=GR bacteria.CPB7776 SS  <......>>>>>>>>....<<<<<<<<.............

bacteria.CPB7776	AAGGGCCCUGCCUUUGGCAGGGAACAGAACCGGCUUAU
#=GR bacteria.CPB7776 SS	....>>>>>>>>...<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Calothrix-PCC7601 DE converted from brown dataset ct file

bacteria.Calothrix-PCC7601		AAGGAGAGAGUAGGCGUAGGCGGUUGCAGAUCAGUCACA
#=GR bacteria.Calothrix-PCC7601 SS  .....>>>>>>>>>..>>>>>>>>>.>>>>>>>>>>...

bacteria.Calothrix-PCC7601	AAAACUGAAUUUGAGGAAAGUCCGGGCUCCCGAAAGACCA
#=GR bacteria.Calothrix-PCC7601 SS  ..<<<<<.<<<<<....BBB.BBBBBAAAAA.>>>>>>>.

bacteria.Calothrix-PCC7601	AACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAU
#=GR bacteria.Calothrix-PCC7601 SS  >>>.>>>>>>>.....<<<<<>>>>>....<<<<.<>>..

bacteria.Calothrix-PCC7601	AGUGCCACAGAAAGAUACCGCCAAUUAGUCAUUAGUCAUU
#=GR bacteria.Calothrix-PCC7601 SS  .>>>>>...........>>>>>>>>>>>>>>>>>>>>>>>

bacteria.Calothrix-PCC7601	UGUCAUUAGUCAUUUGGAAAAACACAAAGGACAAAGGACA
#=GR bacteria.Calothrix-PCC7601 SS  >>>>>>>>>>>>>>>>>>....<<<<<<<<<<<<<<<<<<

bacteria.Calothrix-PCC7601	AAGAACAAAUGACCAAAUUGGUAAGGGUGCAAAGGUGCGG
#=GR bacteria.Calothrix-PCC7601 SS  <<<<<<<<<<<<<<<<.<<<<<..<<.......>>>>>>.

bacteria.Calothrix-PCC7601	UAAGAGCGCACCAGCAACGUCGAGAGGCGUUGGCUCGGUA
#=GR bacteria.Calothrix-PCC7601 SS  ......<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<.

bacteria.Calothrix-PCC7601	AACCCCGGUUGGGAGCAAGGCGAAAGGAACUAUGGUUGGU
#=GR bacteria.Calothrix-PCC7601 SS  .<<<<<<<<<aaaaa...>>>.....>>>>>..>>>.<<<

bacteria.Calothrix-PCC7601	CUUUUACCAGUUCCGCUAAAACAGAGCCGCUAGAGGCGUU
#=GR bacteria.Calothrix-PCC7601 SS  <<<<.<<<<<<<<............<<<......>>>>>>

bacteria.Calothrix-PCC7601	UGGUAACAAACGUCCCAGAUAGAUAACCGCCCUCAUGUAG
#=GR bacteria.Calothrix-PCC7601 SS  >>....<<<<<<<<..........<<<<<<<>>>>>>>>>

bacteria.Calothrix-PCC7601	AGAAGUUACUUGUAACAUUUCUACAUUCGAGAACAGAACC
#=GR bacteria.Calothrix-PCC7601 SS  >>>>>>>>....<<<<<<<<<<<<<<..<<<.......bb

bacteria.Calothrix-PCC7601	CGGCUUACUACCAACUCUUUCCCUUUUU
#=GR bacteria.Calothrix-PCC7601 SS	bbbbbb.<.<<<<<<<<<<.........

//
# STOCKHOLM 1.0

#=GS bacteria.D.desulfuricans DE converted from brown dataset ct file

bacteria.D.desulfuricans		GGAGUCGGACGGAUCGUCGCCGCGGGGGCAACUCCGGGG
#=GR bacteria.D.desulfuricans SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>....<<<<<<<<

bacteria.D.desulfuricans	AGGAAAGUCCGGGCUCCAAAGGGCAGAACGCUGGAUAACA
#=GR bacteria.D.desulfuricans SS  ....BBB.BBBBB>>>>...AAAA.>>>>>>>>>>.....

bacteria.D.desulfuricans	UCCAGGGAGGGCAACCUCCGGACAGCGCCACAGAAAGCAA
#=GR bacteria.D.desulfuricans SS  <<<<<>>>>>....<<<<<>>...>>>>>...........

bacteria.D.desulfuricans	ACCGCCCGGCCUCGGCCGGGUAAGGGUGAAACGGUGGUGU
#=GR bacteria.D.desulfuricans SS  .>>>>>>>>>....<<<<<<<..<<.......>>>>>>..

bacteria.D.desulfuricans	AAGAGACCACCAGAUGCCGUGGUGACACGGCAUGCUCGGC
#=GR bacteria.D.desulfuricans SS  .....<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<

bacteria.D.desulfuricans	AUACCCCGUUCGGAGCAAGACCAAAUAGGGAAGGCGGCCG
#=GR bacteria.D.desulfuricans SS  ..<<<<<<<<<<<<<...>>>>......>>>>>>>>>>>.

bacteria.D.desulfuricans	GCCCGGCCGAAGCCUUCCGGGUAGGUUGCUUGAGGGUGUG
#=GR bacteria.D.desulfuricans SS  aaaa<<<<<...<<<<<<.....<<<<......>>>>>>>

bacteria.D.desulfuricans	GGCAACCGCACUCCUAGAGGAAUGACGGUCACACGCGGGC
#=GR bacteria.D.desulfuricans SS  >....<<<<<<<<..........<<<<<<<>>>>>>>>..

bacteria.D.desulfuricans	AACCGUGUGGACAGAACCCGGCUUACAGUCCGACUCCCGC
#=GR bacteria.D.desulfuricans SS  ..<<<<<<<<......bbbbbbbb.<.<<<<<<<<<<...

bacteria.D.desulfuricans	A
#=GR bacteria.D.desulfuricans SS	.

//
# STOCKHOLM 1.0

#=GS bacteria.D.radiodurans DE converted from brown dataset ct file

bacteria.D.radiodurans		GGAACGCGGGGAAACUCCUGGUCGCGCCUGAGCCGCUUU
#=GR bacteria.D.radiodurans SS  .....>>>>>>>>>>>>>>>>>>.>>>>>>.>>>>>>..

bacteria.D.radiodurans	UUUGGUGGACAGGUGAGGAAAGUCCGGGCACCGCAGGGCA
#=GR bacteria.D.radiodurans SS  ...<<<<<<<<<<<<....BBB.BBBBB>>>>...AAAA.

bacteria.D.radiodurans	AGGAUGCCAGCUAACGGCUGGUCGGCGAGUCGAGCGCCCG
#=GR bacteria.D.radiodurans SS  .>>>>>>>>>>.....<<<<<>>>>>>>>>>>>.>>>>>>

bacteria.D.radiodurans	CCUGAGCGCCGAGGGCAGGCGGAAAGCGGCGAAGCCGAAG
#=GR bacteria.D.radiodurans SS  >>>>...........<<<<<<<<<<<<<<<<.<<<<<.<>

bacteria.D.radiodurans	GACAGUGCCACAGAAACCAGACCGCCACCCCACACAGGCC
#=GR bacteria.D.radiodurans SS  >...>>>>>............>>>>>>>>>>>>>>>>>>.

bacteria.D.radiodurans	CCGGCGCGGGUGCGGGUGGUCAGGGUGAAACGGUGCGGUA
#=GR bacteria.D.radiodurans SS  ...<<<<<<<<<.<<<<<<<..<<.......>>>>>>...

bacteria.D.radiodurans	AGAGCGCACCAGGUUCCCGGGAGACCGGGAGCGUCUGGUC
#=GR bacteria.D.radiodurans SS  ....<<<<<<>>>>>>>>>>....<<<<<<<<..<<<<<.

bacteria.D.radiodurans	AACCCCAUCCGGUGCAAGACCCGACCGUGCGGCGAGGGCG
#=GR bacteria.D.radiodurans SS  .<<<<<<<<<<<<<...>>>>.......>>>>>>>>>>>.

bacteria.D.radiodurans	GCCCGCCCGUUUGAGCCGCCAGGAUGGUCGCUCGAGGCGU
#=GR bacteria.D.radiodurans SS  aaaa<<<<....<<<<<<<......<<<<......>>>>>

bacteria.D.radiodurans	CCUGGCAACAGGCGUCCCAGACAGAUGAUCAGGCUGCCCU
#=GR bacteria.D.radiodurans SS  .>>>....<<<<<<<<..........<<<<<<<>>>>>>>

bacteria.D.radiodurans	GGGGGAGACCCCGGAGCAGACAGAACCCGGCUUACCGUUU
#=GR bacteria.D.radiodurans SS  >>>>....<<<<<<<<<<<......bbbbbbbb.<.<<<<

bacteria.D.radiodurans	CCCCGUGCCAGCCACUGCCGCCCCCCGCGCCCGCCGCUGG
#=GR bacteria.D.radiodurans SS  <<<<<<..........>>>>>>>>>>>>>.....<<<<<<

bacteria.D.radiodurans	GGGCGGU
#=GR bacteria.D.radiodurans SS	<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.Dermocarpa-PCC7437 DE converted from brown dataset ct file

bacteria.Dermocarpa-PCC7437		GGGGAGGAAAGUCCGGGCUCCCGAGAGACCAAACUUGCU
#=GR bacteria.Dermocarpa-PCC7437 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Dermocarpa-PCC7437	GGGUAACGCCCAGUACAGGCGACUGUGAGGAUAGUGCCAC
#=GR bacteria.Dermocarpa-PCC7437 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Dermocarpa-PCC7437	AGAAACAUACCGCCUUUUUUUCAGUCAACAGUAAAAAAAA
#=GR bacteria.Dermocarpa-PCC7437 SS  .........>>>>>..>>>>>>>>>>>>>>..........

bacteria.Dermocarpa-PCC7437	ACUGAUAAUUGGAAAAGGUAAGGGUGCAAAGGUGGGGUAA
#=GR bacteria.Dermocarpa-PCC7437 SS  ..<<<<<<<<<<<<<<<<<..<<.......>>>>>>....

bacteria.Dermocarpa-PCC7437	GAGCCCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAAC
#=GR bacteria.Dermocarpa-PCC7437 SS  ...<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<

bacteria.Dermocarpa-PCC7437	CCCGGUUGGGAGCAAGGUCGAAGGAACAAUGGUUGGUCUU
#=GR bacteria.Dermocarpa-PCC7437 SS  <<<<<<<aaaaa...>>>....>>>>>..>>>>.<<<<<<

bacteria.Dermocarpa-PCC7437	UUUCCAGUUCCGUUUUAGGUGAACCGCUAGAGACGUUUGG
#=GR bacteria.Dermocarpa-PCC7437 SS  <.<<<<<<<<<...........<<<......>>>>>>>>.

bacteria.Dermocarpa-PCC7437	UAACAGCCAUCCCAGAUAGAUAACUACCCCCAAUAAGACG
#=GR bacteria.Dermocarpa-PCC7437 SS  ...<<<<<<<<.................>>>>>>>>>>>>

bacteria.Dermocarpa-PCC7437	UAGUAUACUAUGUCUUUAACUGGGAACAGAACCCGGCUUA
#=GR bacteria.Dermocarpa-PCC7437 SS	>>>....<<<<<<<<<..<<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.E.thermomarinus DE converted from brown dataset ct file

bacteria.E.thermomarinus		GAGGAAAGUCCGGGCUCCGCAGGGCAGGAUGCUGGGUAA
#=GR bacteria.E.thermomarinus SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.E.thermomarinus	UACCCAGUGGGGGCGACCCUAAGGAUAGUGCAACAGAAAU
#=GR bacteria.E.thermomarinus SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.E.thermomarinus	AUACCGCCUGACACUUAAUAUAUGUAGCUAUAGAUGUUAC
#=GR bacteria.E.thermomarinus SS  ...>>>>>>>>>>>>>>>>>>>>>>>>>.......<<<<<

bacteria.E.thermomarinus	CAUAUAUUAAGUGCCGGGUAAGGGUGGGAAGGUGAGGUAA
#=GR bacteria.E.thermomarinus SS  .<<<<<<<<<<<<<<<<<<..<<.......>>>>>>....

bacteria.E.thermomarinus	GAGCUCACCAGCAGCUAGGCGACUAGCUGGCUCUGUAAAC
#=GR bacteria.E.thermomarinus SS  ...<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<

bacteria.E.thermomarinus	CCCAUCUGGAGCAAGACCAAGUUAGGGACAUAAAAAGGUG
#=GR bacteria.E.thermomarinus SS  <<<<<<<<<<<...>>>>......>>>>>.......>>>>

bacteria.E.thermomarinus	GUGGCCCGUCACCGUCCCGGUUGGUAGGUCGCUAGAGCCU
#=GR bacteria.E.thermomarinus SS  >>.aaaa<<<<<<<<<<<........<<<<......>>>>

bacteria.E.thermomarinus	AUUGGCGACAAUAGGCGUAGAUAGAUGGCUGUCUAACACA
#=GR bacteria.E.thermomarinus SS  >>>>....<<<<<<<<........................

bacteria.E.thermomarinus	GAACCCGGCUUA
#=GR bacteria.E.thermomarinus SS	...<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.EM14b-11 DE converted from brown dataset ct file

bacteria.EM14b-11		GAGGAAAGUCCGGGCUCCAAAGGGCAGGGCGCCGGGUAA
#=GR bacteria.EM14b-11 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.EM14b-11	UACCCGGGGUGGGGAAACCCCACACGGUAAGGGCCACAGA
#=GR bacteria.EM14b-11 SS  ..<<<<<>>>>>>>...<<<<<<.<>>...>>>>>.....

bacteria.EM14b-11	AACGAGACCGCCGAAGCGGUAAGCCAGGCAAGGGUGAAAG
#=GR bacteria.EM14b-11 SS  .......>>>>>...>>.....<<..<<<..<<.......

bacteria.EM14b-11	GGUGGGGUAAGGGCCCACCGGCUCCGCGGUAACGCGGGGU
#=GR bacteria.EM14b-11 SS  >>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<<

bacteria.EM14b-11	GAGGGGGUAAAAAUCCCCCGGCGGGUUUUCCCGCUCUGGU
#=GR bacteria.EM14b-11 SS  .<>>>.>..>>>>>>>......<<<<<<<..<.<<<.<<<

bacteria.EM14b-11	AACCUCCCGCCCGGAGCAAGGCCAAGUAGCGCCGCACCCC
#=GR bacteria.EM14b-11 SS  ...<<<<<<<<<<<<<...>>>>.....>>>>>>>>>>>>

bacteria.EM14b-11	GAAAGGGGAUAAGGUGGCCCGCCGAAAUGCGGUGCGGGUA
#=GR bacteria.EM14b-11 SS  ....<<<<..>>>>>.aaaa<<<<<..<<<<<<<<.....

bacteria.EM14b-11	GGCCGCAAUGGAAGUCGGGGGGCAACUCCCGACUCAAGAU
#=GR bacteria.EM14b-11 SS  <<<<........>>>>>>>>......<<<<<<<<......

bacteria.EM14b-11	AGAUGACCACCUAGUACAGAACCCGGCUUA
#=GR bacteria.EM14b-11 SS	.....................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.EM14b-9 DE converted from brown dataset ct file

bacteria.EM14b-9		GAGGAAAGUCCGGGCUCAGAGGGUGCGCGUAUCCCGUUA
#=GR bacteria.EM14b-9 SS  .....>>>.>>>>>>>>>.AAAAAAA.>>>>>>>>>>>.

bacteria.EM14b-9	AGGCUGAUGAAGCCGGAGCGGGGGCGUGAGAGCGCCGGAA
#=GR bacteria.EM14b-9 SS  .>>>>.....<<<<..<<<<<<>>>>>....<<<<<>>..

bacteria.EM14b-9	AGUGCCACAGAAAACAUACCGCCUUAUGUGUCUUCACACA
#=GR bacteria.EM14b-9 SS  .>>>>>............>>>>>>>>>>>>>....<<<<<

bacteria.EM14b-9	UAAGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCCAGG
#=GR bacteria.EM14b-9 SS  <<<<<<..<<.......>>>>>>.......<<<<<<>>>>

bacteria.EM14b-9	AAAGGAGAAGGUUUAAGGGAAAAAACGCCCUUGCCGAAUC
#=GR bacteria.EM14b-9 SS  >>>>>>...>>>..>>>>>........<<<<<<<<...<<

bacteria.EM14b-9	CUUUCCUGCGGUAAACCCAUACGCGAGCAAGGCCAAGCAG
#=GR bacteria.EM14b-9 SS  <<<<<<<<.<<<..<<<<<<<<<<<<<...>>>>.....>

bacteria.EM14b-9	AGGGGAAUUGCGGGAGUUUUCCAAAUCUGACUCCCGCAUG
#=GR bacteria.EM14b-9 SS  >>>>....>>>>>>>>>>..........<<<<<<<<<<.>

bacteria.EM14b-9	CGGGUUGCACCCUUCCCGCUAACACCCUCGGGUAGGCCGC
#=GR bacteria.EM14b-9 SS  >>>>>.aaaaaaa<<<<<<.....<<<<<.....<<<<..

bacteria.EM14b-9	UUAGAGUAAUGACCCCUUAACACAGAACCCGGCUUA
#=GR bacteria.EM14b-9 SS	...........................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH167E DE converted from brown dataset ct file

bacteria.ESH167E		GAGGAAAGUCCGGGCAGUACAGAGCAACCCACCGGUGAA
#=GR bacteria.ESH167E SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH167E	CAGCCGGCCACCAAUUGGUGAGAGAAAGUGCCACAGAAAA
#=GR bacteria.ESH167E SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH167E	UAACUGUCUUGCCUAAGGCGAGAUGAGGGUGAAAAUGUGA
#=GR bacteria.ESH167E SS  ...>>>>>>>>>>...<<<<<<<<..<<.......>>>>>

bacteria.ESH167E	GGUAAGAGCUCACGGUUGUUAUCGGUAACGGUAGCAACGG
#=GR bacteria.ESH167E SS  >.......<<<<<<>>>>>>>>>>....<<<<<<<<<<.<

bacteria.ESH167E	GUAAACCUUGGGUGCUGCAAUGCCACAUAUAGAGCCGUUU
#=GR bacteria.ESH167E SS  <<..<<<<<<<<<<<<<...>>>>......>>>>>>....

bacteria.ESH167E	UGAGAGCUGCUCGUUCAAGGCUCAGGGUAGGCAGCAACAG
#=GR bacteria.ESH167E SS  .>>>>>>.aaaa<<<<<<<<<<<<.....<<<<......>

bacteria.ESH167E	GUAAACAGUAAUGUUUAUCGCAGAUAAAUGAUAGUGUAGA
#=GR bacteria.ESH167E SS  >>>>>>>....<<<<<<<<.....................

bacteria.ESH167E	AACAGAACCCGGCUUA
#=GR bacteria.ESH167E SS	.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH183A DE converted from brown dataset ct file

bacteria.ESH183A		GAGGAAAGUCCGGGCACCACAGGGCUGGUCGCUGGGUAA
#=GR bacteria.ESH183A SS  .....>>>.>>>>>>>>>...AAAA.>>>.>>>>>>...

bacteria.ESH183A	UGCCCAGUGCGCGUGAGCGUGAGGAUAGUGCCACAGAAAU
#=GR bacteria.ESH183A SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH183A	GAAAACCGCCGGCUUGUCCGGUAAGGGUGCAACGGUGCGG
#=GR bacteria.ESH183A SS  .....>>>>>>>.....<<<<<..<<.......>>>>>>.

bacteria.ESH183A	UAAAAGCGUCACCAGCGGAGUCGAGAGGCUCCGGCUAGGU
#=GR bacteria.ESH183A SS  ......<<.<<<<>>>>>>>>>....<<<<<<<.<<.<<<

bacteria.ESH183A	AAACCCCACUAAAGGUGCAAGGCGAAGGUAUAUCACGAGA
#=GR bacteria.ESH183A SS  ..<<<<<<<<...<<<<...>>>>.......>>>>>>>>.

bacteria.ESH183A	AAACGGUGGCCCGCCGCCUCGAGAUGCCGAUGCUGCUAGA
#=GR bacteria.ESH183A SS  ...>>>>.aaaa<<<<.<<<<<<<<....<.<<<......

bacteria.ESH183A	GGGUUUGGGUAACCAAAUUCCAAGAUAGAUGACGAUUUAA
#=GR bacteria.ESH183A SS  >>>>>>>>....<<<<<<<<....................

bacteria.ESH183A	ACAGAACCCGGCUUA
#=GR bacteria.ESH183A SS	......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH20b-1 DE converted from brown dataset ct file

bacteria.ESH20b-1		GAGGAAAGUCCGGGCUUCACAGGGCAGGAUGCCAGAUAA
#=GR bacteria.ESH20b-1 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH20b-1	CGUCUGGCGGAGGCGACUCCAGGGAAAGUGCAACAGAAAU
#=GR bacteria.ESH20b-1 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH20b-1	AUACCGCCGCUUAAUGCGGUAAGGGUGGAAAGGUGGUGUA
#=GR bacteria.ESH20b-1 SS  ...>>>>>>>.....<<<<<..<<.......>>>>>>...

bacteria.ESH20b-1	AGAGACCACCGCCCUUCUGGUAACAGAAGGGGUCCAUGUA
#=GR bacteria.ESH20b-1 SS  ....<<<<<<>>>>>>>>>....<<<<<<<<.<...<<<.

bacteria.ESH20b-1	AACCCCAUCCGAAGCAAGACCGAACAGGGAGCAUAAGGCG
#=GR bacteria.ESH20b-1 SS  .<<<<<<<<<<<<<...>>>>.....>>>>>>...>>>>.

bacteria.ESH20b-1	GCCCGUCUGCUCCCGGGUAGGUCGCUUGAGCCUGCCGGCG
#=GR bacteria.ESH20b-1 SS  aaaa<<<<<<<<<<.....<<<<......>>>>>>>>...

bacteria.ESH20b-1	ACGGCAGGCCUAGAUAGAUGGCCAUUCAAUGACAGAAUCC
#=GR bacteria.ESH20b-1 SS  .<<<<<<<<............................<<<

bacteria.ESH20b-1	GGCUUA
#=GR bacteria.ESH20b-1 SS	<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH210B DE converted from brown dataset ct file

bacteria.ESH210B		GAGGAAAGUCCGGGCUCUACAGAGCAAAGUGGUGGAUAA
#=GR bacteria.ESH210B SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH210B	CUUCCACCCGGGGCGACCCGCGGGAAUAGUGCAACAGAGA
#=GR bacteria.ESH210B SS  ..<<<<<>>>>>....<<<<.<>>....>>>>>.......

bacteria.ESH210B	GUAAACCGCCAAAAGAAAUUUUGGUAAGGAGUGAAACGGU
#=GR bacteria.ESH210B SS  .....>>>>>>>>>....<<<<<<<..<<........>>>

bacteria.ESH210B	GGUGUAAGAGACCACCAGCAUUGCAAGUGAUUGCAGUGGC
#=GR bacteria.ESH210B SS  >>>.......<<<<<<>>>>>>>>>>....<<<<<<<<.<

bacteria.ESH210B	UAUGCAAACCCCACUUUUGAGCAAGAUCAAGAAGUUGCAA
#=GR bacteria.ESH210B SS  <.<<<..<<<<<<<<<.<<<<...>>>>....>>>>>>>>

bacteria.ESH210B	GCAAUUGCAAUGGAGUGAAUGUUUGAGAACUGCUCGUUCG
#=GR bacteria.ESH210B SS  ....<<<<<<<<..>>>>>>....>>>>>>.aaaa<<<<<

bacteria.ESH210B	AGUUCACAGGUAGAUCGCAUGACAUAUGUAGCAAUGCAUA
#=GR bacteria.ESH210B SS  <<<<<<<.....<<<<......>>>>>>>>....<<<<<<

bacteria.ESH210B	UGCAAGAUGGAUGAUUGUCCCUCAGCAAUGAGGACAGAAC
#=GR bacteria.ESH210B SS  <<.................>>>>>....<<<<<......<

bacteria.ESH210B	CCGGCUUA
#=GR bacteria.ESH210B SS	<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH212C DE converted from brown dataset ct file

bacteria.ESH212C		GAGGAAAGUCCGGGCUCCAUCGACAUACGGUGCCGGAUA
#=GR bacteria.ESH212C SS  .....>>>.>>>>>>>>>...AAAAA.>>>>>>>>>>..

bacteria.ESH212C	ACACCCGGCGGGGGCGACCCCAGGGAAAGUGCCACAGAGA
#=GR bacteria.ESH212C SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.ESH212C	ACGAACCGCCUUCACUCCGUGAAGGUAAGGGUGAAAAGGU
#=GR bacteria.ESH212C SS  .....>>>>>>>>>>...<<<<<<<<..<<.......>>>

bacteria.ESH212C	GCGGUAAGAGCGCACCGCGUUUCUAGCAAUAGAGACGGCA
#=GR bacteria.ESH212C SS  >>>.......<<<<<<>>>>>>>>>....<<<<<<<<.<.

bacteria.ESH212C	UGGCAAACCCCACCGGGAGCAAAACCGAAUAGGGACGGCA
#=GR bacteria.ESH212C SS  .<<<..<<<<<<<<<<<<<...>>>>......>>>>>>>.

bacteria.ESH212C	CAGUGGAAAGUUCGCUCUCGGGCGAUAACUCCGCGGGGCG
#=GR bacteria.ESH212C SS  ..>>>>>..>>>>>....<<<<<......<<<<<.>>>>>

bacteria.ESH212C	AUGUCAGGCCCGCUGUCCGGGUAGGUUGCUUGAGGCGCAA
#=GR bacteria.ESH212C SS  .aaaaa<<<<<<<<<<<<.....<<<<......>>>>>>>

bacteria.ESH212C	GGUAACUUGCGUCCCAGAGGAAUGGCCGUCACGUCUGCGU
#=GR bacteria.ESH212C SS  >....<<<<<<<<.................>>>>>>>>>>

bacteria.ESH212C	GGUGCGAACCAUUCAGGCCCUACAGAACCCGGCUUA
#=GR bacteria.ESH212C SS	>>>....<<<<<<<<<<<.<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH26-4 DE converted from brown dataset ct file

bacteria.ESH26-4		GAGGAAAGUCCGGGCUGCACAGAGCGGGAUGACGGCUAA
#=GR bacteria.ESH26-4 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH26-4	CGGCCGUACGCUGAAAGCUGGCAACAGUAUAAGGCGAGGA
#=GR bacteria.ESH26-4 SS  ..<<<<<>>>>>>>>>>>>>....<<<<<<<<<<<<.<>>

bacteria.ESH26-4	AUAGGGCCACAGAGACGAGCGUAUUAAGUUACGGUGAAAC
#=GR bacteria.ESH26-4 SS  ...>>>>>...........>>>>>....<<<<<.......

bacteria.ESH26-4	GCGGUAACCUCCAUCAGCAGCAAUAUCAAAUAGGCUGGCA
#=GR bacteria.ESH26-4 SS  ..<<<..<<<<<<<<<<<<<...>>>>......>>>>>>>

bacteria.ESH26-4	UUUGUCGCAAGACAUAAGGCGUGGCUCGCGCCUGCCAGCG
#=GR bacteria.ESH26-4 SS  ..>>>>....<<<<...>>>>>.aaaa<<<<<<<<<<<<.

bacteria.ESH26-4	GGUAGAUAGCUUGAGCGUGUGAGUAAUUGCACGCCUAGAG
#=GR bacteria.ESH26-4 SS  ....<<<<......>>>>>>>>....<<<<<<<<......

bacteria.ESH26-4	GAAUGACUGUCAGCUACGCAAGUAGUUACAGAACCCGGCU
#=GR bacteria.ESH26-4 SS  ...........>>>>>>....<<<<<<......<<<<<<<

bacteria.ESH26-4	UA
#=GR bacteria.ESH26-4 SS	<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH30-3 DE converted from brown dataset ct file

bacteria.ESH30-3		GAGGAAAGUCCGGGCAACACAGAGCAUCCUACUUCUUAA
#=GR bacteria.ESH30-3 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH30-3	CGGGAAGCUAUCUGCGAAGGUAGAGUAAUGUAGAAGAAAA
#=GR bacteria.ESH30-3 SS  ..<<<<<>>>>>>....<<<<<<>>..>>>>>........

bacteria.ESH30-3	CAACCGCCUUUUUCCUCUUUUGGAACAAGGUAAGGGUGAG
#=GR bacteria.ESH30-3 SS  ...>>>>>>>>>>>>......<<<<<<<<<<..<<.....

bacteria.ESH30-3	AAGGUGGAGUAAGAGCCCACCAGUUGCGUGGUGACACGGU
#=GR bacteria.ESH30-3 SS  ..>>>>>>.......<<<<<<>>>>>>>>>....<<<<..

bacteria.ESH30-3	UAAGCUGUACGUCUUAGGAGUUGUAAGGUCGAUGUAUACC
#=GR bacteria.ESH30-3 SS  <<<.<<.<<<<<<<<<<<<<<<<...>>>>.......>>>

bacteria.ESH30-3	GGCAUUAUGAGGGCUGCUCGCCCCACGUCGGAGGGUAGAC
#=GR bacteria.ESH30-3 SS  >>>.......>>>>.aaaa<<<<...<<<<<<.....<<<

bacteria.ESH30-3	CGCUAAAGUAAUGUGGCAACACAUUACUCAGAUAAAUGAC
#=GR bacteria.ESH30-3 SS  <......>>>>>>>>....<<<<<<<<.............

bacteria.ESH30-3	AAACACCUUAAUUUAUUAUUAAGGACAGAACCCGGCUUA
#=GR bacteria.ESH30-3 SS	.....>>>>>>>.....<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH46a-1 DE converted from brown dataset ct file

bacteria.ESH46a-1		GAGGAAAGUCCGGGCUCCACAGAGCAGAAUGCCGGCUAA
#=GR bacteria.ESH46a-1 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH46a-1	CGGCCGGGCGCGGCAACGCGACGGAAAGUGGAACAGAAAG
#=GR bacteria.ESH46a-1 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH46a-1	CAAUACCGCCGAUGAUUGCCUUCGGGCAAAACAGGUAAGG
#=GR bacteria.ESH46a-1 SS  .....>>>>>..>>>>>>>>....<<<<<.<<<<<<..<<

bacteria.ESH46a-1	GUGAAAAGGUGCGGUAAGAGCGCACCGUGCAUUUGGUAAC
#=GR bacteria.ESH46a-1 SS  .......>>>>>>.......<<<<<<>>>>>>>>>....<

bacteria.ESH46a-1	AAAGGCGCAGCAGGCUAAACCCCAUUCGGAGCAAGACCAA
#=GR bacteria.ESH46a-1 SS  <<<<<<<...<..<<<..<<<<<<<<<<<<<...>>>>..

bacteria.ESH46a-1	ACAGAACGCGAUGACGCUGCUCGCCGAGCGUUCGGGUAGG
#=GR bacteria.ESH46a-1 SS  ...>>>>>>...>>>>>.aaaa<<<<<<<<<<<.....<<

bacteria.ESH46a-1	UUGCUUGAGCACACCAGCAAUGAUGUGCCUAGAGGAAUGA
#=GR bacteria.ESH46a-1 SS  <<......>>>>>>>>....<<<<<<<<............

bacteria.ESH46a-1	CUGUCCGCGACAGAACCCGGCUUA
#=GR bacteria.ESH46a-1 SS	...............<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH7-16 DE converted from brown dataset ct file

bacteria.ESH7-16		GAGGAAAGUCCGGGCUACAUAGGGCAGCGUGCCAGCUAA
#=GR bacteria.ESH7-16 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH7-16	CGGCUGGGCAGGGUAACUUGACGACCAGUGCAGCAGAGAG
#=GR bacteria.ESH7-16 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH7-16	UAGACCGCCUUUGGCUUAUAUGAGUAUCGCAAGAUAUUCA
#=GR bacteria.ESH7-16 SS  ....>>>>>...>>>..>>>>>>>>>>>....<<<<<<<<

bacteria.ESH7-16	UGUCAUCGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACC
#=GR bacteria.ESH7-16 SS  <<<.<<<<<<..<<.......>>>>>>.......<<<<<<

bacteria.ESH7-16	GCGUGGCUGGCAACAGUUCACGGCAUGGUAAACUCCACGC
#=GR bacteria.ESH7-16 SS  >>>>>>>>>....<<<.<<<<<.<..<<<..<<<<<<<<<

bacteria.ESH7-16	GUAGCAAGACCAAAUAGGCAUCGGCAUGGCGCGGCCCGCG
#=GR bacteria.ESH7-16 SS  <<<<...>>>>......>>>>>>....>>>>>.aaaa<<<

bacteria.ESH7-16	UUCGAUGCGGGUAGGUUGCUUGAGCGUACGAGCGAUUGUG
#=GR bacteria.ESH7-16 SS  <<<<<<<<.....<<<<......>>>>>>>>....<<<<<

bacteria.ESH7-16	CGCCUAGAGGAAUGAUUGUCCACGACAGAAUCCGGCUUA
#=GR bacteria.ESH7-16 SS	<<<...........................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.ESH7-4 DE converted from brown dataset ct file

bacteria.ESH7-4		GAGGAAAGUCCGGGCUCCACAGGGCAGGAUGCUGGCUAA
#=GR bacteria.ESH7-4 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.ESH7-4	CGGCCAGGCGUCGCGAGGCGACGGAAAGUGGAACAGAGAG
#=GR bacteria.ESH7-4 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.ESH7-4	CAGAACCGCCGAUGGCCGGCCGGUGCACCCGCAAGGGUAG
#=GR bacteria.ESH7-4 SS  .....>>>>>..>>>>>.>>>>>..>>>>>....<<<<.<

bacteria.ESH7-4	CCGGUGGCACAGGCAAGGGUGAAAAGGUGGACUCCUUCGG
#=GR bacteria.ESH7-4 SS  <<<<<<<<.<<<<<..<<.......>>>>>.>>>>....<

bacteria.ESH7-4	GAGCCGCCGGGGGGAACCCCGGCGCGGUAAGAGCGCACCG
#=GR bacteria.ESH7-4 SS  <<<<>>>>>>>>....<<<<<<<<>>.......<<<<<<>

bacteria.ESH7-4	CGGACGCAGUGAUGUGGACGGCAGGCUAAACCCCAUCCGG
#=GR bacteria.ESH7-4 SS  >>>>>>>>....<<<<<<<<.<..<<<..<<<<<<<<<<<

bacteria.ESH7-4	AGCAAGACCAAAUAGGGGUACAUUGGCGUGGCCCGCGCUG
#=GR bacteria.ESH7-4 SS  <<...>>>>......>>>>>>...>>>>>.aaaa<<<<<<

bacteria.ESH7-4	UACCCGGGUAGGUUGCUUGAGCUUGUCGGUAACGGCAAGA
#=GR bacteria.ESH7-4 SS  <<<<<.....<<<<......>>>>>>>>....<<<<<<<<

bacteria.ESH7-4	CUAGAGGAAUGGCUGUCCAACGACAGAAUCCGGCUUA
#=GR bacteria.ESH7-4 SS	............................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.F.antarctica DE converted from brown dataset ct file

bacteria.F.antarctica		CGAAGAGCACGGUGGUGGGUAACGCCCACCCGGGGUGAC
#=GR bacteria.F.antarctica SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.F.antarctica	CCGCGGGACAGUGCCACAGAAAGCAGACCGCCCACCCGCC
#=GR bacteria.F.antarctica SS  <<<.<>>...>>>>>............>>>>>>>>>>>>.

bacteria.F.antarctica	UCGGCGGCGUGGGUAAGGGUGAAACGGUGGUGCAAGAGAC
#=GR bacteria.F.antarctica SS  ....<<<<<<<<<<..<<.......>>>>>>.......<<

bacteria.F.antarctica	CACCAGCACCCCCGGUGACGGGGGUGGCUAGGCAAACCCC
#=GR bacteria.F.antarctica SS  <<<<>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<<

bacteria.F.antarctica	ACCGGGAGCAAGACCAAGAAGGCGCCCUCCUGCAGAGGAG
#=GR bacteria.F.antarctica SS  <<<<<......>>>>.....>>>>>>>>>>>....<<<<<

bacteria.F.antarctica	GACGCCGCGGGAGCGUUCGAGGGCUGCUCGCCCGAGCUCC
#=GR bacteria.F.antarctica SS  <<<<<<..>>>>>>....>>>>>>.aaaa<<<<<<<<<<<

bacteria.F.antarctica	CGGGUAGGUCGCACCAGGCCGCUGGCAACAGCGGUCGCAG
#=GR bacteria.F.antarctica SS  <.....<<<<......>>>>>>>>....<<<<<<<<....

bacteria.F.antarctica	AUGGAUGAUCGCCCCCUCCGCUCCGGCGGGGGG
#=GR bacteria.F.antarctica SS	.............>>>>>>>>....<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.F.mortiferum DE converted from brown dataset ct file

bacteria.F.mortiferum		GAGGAAAGUCCGGGCUUCCAAGAGCAAGAGGGCAGCUAA
#=GR bacteria.F.mortiferum SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.F.mortiferum	CGGCUGCUAAAGGAAACUUUAAGGAAAGCGCCACAGAAAA
#=GR bacteria.F.mortiferum SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.F.mortiferum	UAGACCGCCAUUUUGGUAAGGGUGAAAAGGUGGUGUAAGA
#=GR bacteria.F.mortiferum SS  ....>>>>>>...<<<<..<<.......>>>>>>......

bacteria.F.mortiferum	GACCACCAGUUCUUUAGGAAACUAAAGAAGCUAGGUAAAC
#=GR bacteria.F.mortiferum SS  .<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<..<<

bacteria.F.mortiferum	CCCCUCUGGAGCAAGACUAAAUAGGAAAGGUUAAGGGUUG
#=GR bacteria.F.mortiferum SS  <<<<<<<<<<<...>>>>......>>>>>.....>>>>.a

bacteria.F.mortiferum	CUCGUCCAGCUUUCAGGGUAAGUUGCUUGAAAUUAUAAGA
#=GR bacteria.F.mortiferum SS  aaa<<<<..<<<<<......<<<<......>>>>>>>>..

bacteria.F.mortiferum	GAUUAUAAUUCUAGAUAAAUAAUUAACAUAUACAGAACCC
#=GR bacteria.F.mortiferum SS  ..<<<<<<<<...........................<<<

bacteria.F.mortiferum	GGCUUA
#=GR bacteria.F.mortiferum SS	<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.F.yabuuchiae DE converted from brown dataset ct file

bacteria.F.yabuuchiae		GAGGAAAGUCCGGACAACACAGAGCAACUCACUUCCUAA
#=GR bacteria.F.yabuuchiae SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.F.yabuuchiae	CGGGAAGGCUCCGUUCAGGCGGAGACAGCAAGUGCCACAG
#=GR bacteria.F.yabuuchiae SS  ..<<<<<>>>>>>>....<<<<<<.<>>...>>>>>....

bacteria.F.yabuuchiae	AAAAUAUACCGCCUUGUCUUUGAUGAGGUAAGGGUGAAAA
#=GR bacteria.F.yabuuchiae SS  ........>>>>>>>>>>...<<<<<<<<..<<.......

bacteria.F.yabuuchiae	CGUGAGGUAAGAGCUCACGGUAUUGCAUGGCGACAUGGAU
#=GR bacteria.F.yabuuchiae SS  >>>>>>.......<<<<<<>>>>>>>>>>....<<<<<<<

bacteria.F.yabuuchiae	UACGGUAAACCUUGAGUGUUGAAAGACCAAAUAGGUUACG
#=GR bacteria.F.yabuuchiae SS  <<<<<<..<<<<<<<<<<<<<...>>>>......>>>>>>

bacteria.F.yabuuchiae	AAACUCGAAGGCUGCUCGUCUUCUUUUACUUCGGUAAGAU
#=GR bacteria.F.yabuuchiae SS  >>....>>>>>>.aaaa<<<<<<>>>>>>....<<<<<<<

bacteria.F.yabuuchiae	UCGUAAUGGGUAGGUUGAUGGAGUCUGUCAGCAAUGGCAG
#=GR bacteria.F.yabuuchiae SS  <<<<<<<.....<<<<......>>>>>>>>....<<<<<<

bacteria.F.yabuuchiae	AUCUAGAUAAAUGAUAGAAAACCGAUUUUUCGGUGUACAG
#=GR bacteria.F.yabuuchiae SS  <<.................>>>>>>....<<<<<.<....

bacteria.F.yabuuchiae	AACCCGGCUUA
#=GR bacteria.F.yabuuchiae SS	..<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Fischerella-UTEX1829 DE converted from brown dataset ct file

bacteria.Fischerella-UTEX1829		GGGGAGGAAAGUCCGGGCUUCCGAAAGACCAAACUUGCU
#=GR bacteria.Fischerella-UTEX1829 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Fischerella-UTEX1829	GGGUAACGCCCAGUGCGAGCGAUCGCGAGGAUAGUGCCAC
#=GR bacteria.Fischerella-UTEX1829 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Fischerella-UTEX1829	AGAAAAAUACCGCCUUCUUUCAGUGAACAGUGAACAGUUA
#=GR bacteria.Fischerella-UTEX1829 SS  .........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>

bacteria.Fischerella-UTEX1829	UCAGUGAACAGUAAAUAACUGAUAACUGAUAACUGAUAAC
#=GR bacteria.Fischerella-UTEX1829 SS  >>>>>>>>>>>>.....<<<<<<<<<<<<<<<<<<<<<<<

bacteria.Fischerella-UTEX1829	UGAUAACUGAAAAAGGGUAAGGGUGCAAAGGUGCGGUAAG
#=GR bacteria.Fischerella-UTEX1829 SS  <<<<<<<<<<<<<<<<<<..<<.......>>>>>>.....

bacteria.Fischerella-UTEX1829	GGCGCACCAGCAACACCGAGAGGUGUUGGCUCGGUAAACC
#=GR bacteria.Fischerella-UTEX1829 SS  ..<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<

bacteria.Fischerella-UTEX1829	CCGGUUGGAAGCAAGGCGAAUGGAACUAUGGUUGGUCUUU
#=GR bacteria.Fischerella-UTEX1829 SS  <<<<<<aaaaa...>>>.....>>>>>..>>>.<<<<<<<

bacteria.Fischerella-UTEX1829	UACCAGUUCCACAUAUAAGAGCCGCUAGAGGCGUCUGGUA
#=GR bacteria.Fischerella-UTEX1829 SS  .<<<<<<<<...........<<<......>>>>>>>>...

bacteria.Fischerella-UTEX1829	ACAGCCGUCCCAGAUAGAUAACCGCCCUCUUAAUUUAAGA
#=GR bacteria.Fischerella-UTEX1829 SS  .<<<<<<<<.................>>>>>>...<<<<<

bacteria.Fischerella-UTEX1829	GAACAGAACCCGGCUUAC
#=GR bacteria.Fischerella-UTEX1829 SS	<.......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.G.sulfurreducens DE converted from brown dataset ct file

bacteria.G.sulfurreducens		GAAGCAGAACAGAUGGCCGCCCUUCGCGUGCGGGGGGAG
#=GR bacteria.G.sulfurreducens SS  >>>>>>>>>>>>>>>>>>.>>>>>>>....<<<<<<<..

bacteria.G.sulfurreducens	GAAAGUCCGGGCUCCACAGGGCAUGGUGCUGGAUAACGUC
#=GR bacteria.G.sulfurreducens SS  ..BBB.BBBBB>>>>...AAAA.>>>>>>>>>>.....<<

bacteria.G.sulfurreducens	CAGCGGGGGCGACCCCAGGGAUAGUGCCACAGAGAGAAGU
#=GR bacteria.G.sulfurreducens SS  <<<>>>>>....<<<<.<>>...>>>>>............

bacteria.G.sulfurreducens	CCGCCCGCUCAGGCGGGUAAGGGUGAAAGGGUGAGGUAAG
#=GR bacteria.G.sulfurreducens SS  >>>>>>>>....<<<<<<..<<.......>>>>>>.....

bacteria.G.sulfurreducens	AGCUCACCGGGUUCGGCGGUGACGUCGGAUGCCAGGUAAA
#=GR bacteria.G.sulfurreducens SS  ..<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<..<

bacteria.G.sulfurreducens	CCCCACCAGGAGCAAGGCCGAAUAGGGAAGCGUCAAGGAU
#=GR bacteria.G.sulfurreducens SS  <<<<<<<<<<<<...>>>>......>>>>>>....>>>>>

bacteria.G.sulfurreducens	GGCCCGUCCGUGCUUCCGGGUUGGCUGCUUGAGGCCGUCG
#=GR bacteria.G.sulfurreducens SS  .aaaa<<<<<.<<<<<<.....<<<<......>>>>>>>>

bacteria.G.sulfurreducens	GUAACGGCGGUCCCAGAGGAAUGGUCAUCGCCCGCCAAGG
#=GR bacteria.G.sulfurreducens SS  ....<<<<<<<<..........<<<<<<<>>>>>>>>>>>

bacteria.G.sulfurreducens	GGUAACCCGCGGCGGGAACAGAACCCGGCUUAUGGGCUGC
#=GR bacteria.G.sulfurreducens SS  >....<<<<<<<<<<<<......bbbbbbbb.<<<<<<<<

bacteria.G.sulfurreducens	UUCGACCA
#=GR bacteria.G.sulfurreducens SS	<<<.....

//
# STOCKHOLM 1.0

#=GS bacteria.H.influenza DE converted from brown dataset ct file

bacteria.H.influenza		CGAGUUGGUUAGACAAUCGCUGGUUUAUUGAAGCCCUUA
#=GR bacteria.H.influenza SS  >>>>>>>>>>>BBBBBBB.>>>>>>>>>>>>>.>>>>>>

bacteria.H.influenza	ACCGUAUUUAUACGACCUAGUGGGACAAGUAAACGAGAGG
#=GR bacteria.H.influenza SS  .>>>>......<<<<<<<<<.<<<<.<.<<<<<<<<<...

bacteria.H.influenza	AAAGUCCGAGCUACACAGGGCAGAGUGCCGGAUAACGUCC
#=GR bacteria.H.influenza SS  .>>>.>>>>>>>>>...AAAA.>>>>>>>>>>.....<<<

bacteria.H.influenza	GGGCGGCGUGAGCCGACGACCAGUGCAACAGAGAGCAGAC
#=GR bacteria.H.influenza SS  <<>>>>>....<<<<.<>>...>>>>>............>

bacteria.H.influenza	CGCCGUGUAAACGGUAAGGGUGAAAGGGUGCGGUAAGAGC
#=GR bacteria.H.influenza SS  >>>>>>....<<<<<..<<.......>>>>>>.......<

bacteria.H.influenza	GCACCGUGCCGUUGGUAACAACGUGCAGCAGGGUAAACUC
#=GR bacteria.H.influenza SS  <<<<<>>>>>>>>>....<<<.<<<<<.<..<<<..<<<<

bacteria.H.influenza	CACUCGUAGCAAGACCAAAUAGGAACUCAAUGGGUGGCCC
#=GR bacteria.H.influenza SS  <<<<<<<<<...>>>>......>>>>>>..>>>>>.aaaa

bacteria.H.influenza	GUCCAGAGUUCGGGUAGGUUGCUUGAGCGGCAGAGUAAUU
#=GR bacteria.H.influenza SS  <<<<<<<<<<<.....<<<<......>>>>>>>>....<<

bacteria.H.influenza	UGUCGCCUAGAGGAAUGAUUGUCCACGACAGAACUCGGCU
#=GR bacteria.H.influenza SS  <<<<<<..........bbbbbbb..........<<<<<<<

bacteria.H.influenza	UAUCGACCAACUCAAAAC
#=GR bacteria.H.influenza SS	<.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.H.pylori-26695 DE converted from brown dataset ct file

bacteria.H.pylori-26695		CGCAUUAGAAGAUGGUCGCUAUUUUAGAAUAGAGGAAAG
#=GR bacteria.H.pylori-26695 SS  >>>>>>>>>>BBBBBBB.>>>>>....<<<<<....>>>

bacteria.H.pylori-26695	UCCGGGCUACAUUAGACAAAAUUCCAUCUAACGGAUGGCU
#=GR bacteria.H.pylori-26695 SS  .>>>>>AAAA..>>>>>.>>>>>>>>>>.....<<<<<>>

bacteria.H.pylori-26695	AGCGCAAGCUAAGGGAAAGUGCCACAGAAAGCAAACCGCC
#=GR bacteria.H.pylori-26695 SS  >>>....<<<<.<>>...>>>>>............>>>>>

bacteria.H.pylori-26695	UUUUAAGGUAAGGGUGAAAGGGUGGGGUAAGAGCCCACCA
#=GR bacteria.H.pylori-26695 SS  >....<<<<..<<.......>>>>>>.......<<<<<<>

bacteria.H.pylori-26695	GAGCUAAAGCAAUUUAGCUUGUUUGGGCAAACCCAAUUUG
#=GR bacteria.H.pylori-26695 SS  >>>>>>>>....<<<<<<<<.<...<<<..<<<<<<<<<a

bacteria.H.pylori-26695	UAGCAAGAAGCGCAUGGUAAGUCUAAAUUGAUACACGCUU
#=GR bacteria.H.pylori-26695 SS  aaa...>>>>.......>>>..<<<<<<<<.......<<<

bacteria.H.pylori-26695	CGCUUGAGGAAUAUUGCAAAAUAUUUCCCAGAUAAAUGGC
#=GR bacteria.H.pylori-26695 SS  <......>>>>>>>>....<<<<<<<<..........bbb

bacteria.H.pylori-26695	CAUCCAUUGACAGAACCCGGCUUAUUCUAAUGCUCAA
#=GR bacteria.H.pylori-26695 SS	bbbb...........<<<<<<<<.<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS bacteria.I.calvum DE converted from brown dataset ct file

bacteria.I.calvum		CACAGGGCAGGGUGGUGGCCAACAGCCACCCGGGGUGAC
#=GR bacteria.I.calvum SS  A...>>>>.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.I.calvum	CCGCGGGACAGUGCCACAGAAAACAAACCGCCAACUGCUU
#=GR bacteria.I.calvum SS  <<<.<>>...>>>>>............>>>>>>>>>>>..

bacteria.I.calvum	CGGCAGUCGGUAAGGGUGAAACGGUGGUGUAAGAGACCAC
#=GR bacteria.I.calvum SS  ..<<<<<<<<<..<<.......>>>>>>.......<<<<<

bacteria.I.calvum	CAGCGCGCCAGGUGACUGGAGCGGCUCGGUAAACCCCACC
#=GR bacteria.I.calvum SS  <>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<<

bacteria.I.calvum	CGGAGCAAGCCCAGACAGCGCACGUUCGAGACCGGCCCGG
#=GR bacteria.I.calvum SS  <a......>>>>.....>>>>>>....>>>>>>.<<<<<<

bacteria.I.calvum	UCGAGUGCGCGGGUAGGGCGCUGGAGCCGGUCAGCAAUGG
#=GR bacteria.I.calvum SS  <<<<<<<<<<.....<<<<......>>>>>>>>....<<<

bacteria.I.calvum	CCGGCCGAGAUGGAUGGCCGUCGCCGCGUCACCGGCAACG
#=GR bacteria.I.calvum SS  <<<<<.................>>>>>>>>>>>>....<<

bacteria.I.calvum	GAGAUGCGGA
#=GR bacteria.I.calvum SS	<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.L.borgpetersenii DE converted from brown dataset ct file

bacteria.L.borgpetersenii		GAGGAAAGUCCGGGCACCAGGAAACACGGGACCGGGUAA
#=GR bacteria.L.borgpetersenii SS  .....>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>...

bacteria.L.borgpetersenii	UCCCCGGAGUUUUUUCUUUGAGAGAAAUUUUAGGGAAAAA
#=GR bacteria.L.borgpetersenii SS  ..<<<<<>>>>>>>>>>>>>>>>....<<<<<<<<<<<<<

bacteria.L.borgpetersenii	AUAUGGAAAGUGCAACAGAAAGGAUACCGCCUCGUCGAAG
#=GR bacteria.L.borgpetersenii SS  <<.<>>...>>>>>............>>>>>>>>>>>>>.

bacteria.L.borgpetersenii	AAAUUCGGCGCGGUAAGGGUGAAAUGGCGGGGUAAGAGCC
#=GR bacteria.L.borgpetersenii SS  ...<<<<<<<<<<<..<<.......>>>>>>.......<<

bacteria.L.borgpetersenii	CACCUUCGAUUUCGAGAGAGAUCGGGAACGGUAAACCCUC
#=GR bacteria.L.borgpetersenii SS  <<<<>>>>>>>>>....<<<<<<<<.<..<<<..<<<<<<

bacteria.L.borgpetersenii	CCGGGUGCAAUCUCAAAUAGGCAGCCUUUUUGUCGUUUCC
#=GR bacteria.L.borgpetersenii SS  <<<aaaa...>>>>.......>>>>>>..>>>><<<<<<.

bacteria.L.borgpetersenii	GCAGGGCUGUGGGUAGAGAGCAAAGACUCCGAUCGGUAAC
#=GR bacteria.L.borgpetersenii SS  <<<<<<<<<<.....<<<<.......>>>>>>>>......

bacteria.L.borgpetersenii	UUUCGGAGCAAGAUAAAUGAUCAUCCAUCUCUUCAGGAGA
#=GR bacteria.L.borgpetersenii SS  <<<<<<<<.................>>>>>>>...<<<<<

bacteria.L.borgpetersenii	GGACAGAACCCGGCUUA
#=GR bacteria.L.borgpetersenii SS	<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.L.ferrooxidans-CF DE converted from brown dataset ct file

bacteria.L.ferrooxidans-CF		GAGGAAAGUCCGGGCACCAAAGGGCAAGGCGCUGGGUAA
#=GR bacteria.L.ferrooxidans-CF SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.L.ferrooxidans-CF	CUCCCAGUCCCGGUGACGGGAAGGAAAGUGCCACAGAAAA
#=GR bacteria.L.ferrooxidans-CF SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.L.ferrooxidans-CF	GAUACCGCCCGGAUUCGUUCGGGUAAGGGUGAAAAGGUGA
#=GR bacteria.L.ferrooxidans-CF SS  ....>>>>>>>>>....<<<<<<<..<<.......>>>>>

bacteria.L.ferrooxidans-CF	GGUAAGAGCUCACCGCGGACCUGGUGACAGGGACGGCAUG
#=GR bacteria.L.ferrooxidans-CF SS  >.......<<<<<<>>>>>>>>>....<<<<<<<<.<..<

bacteria.L.ferrooxidans-CF	GUAAACCCCGCCUGGUGCAAGACCAAAUAGGGGGGCGUUC
#=GR bacteria.L.ferrooxidans-CF SS  <<..<<<<<<<<<<<<<...>>>>......>>>>>>....

bacteria.L.ferrooxidans-CF	CCGCAAGGGAUAAGAUUGGCCCGGUCAAUGCUCCCGGGUA
#=GR bacteria.L.ferrooxidans-CF SS  .............>>>>.aaaa<<<<...<<<<<<.....

bacteria.L.ferrooxidans-CF	AGGUCGCUUGAAUGCAAGGGUAACCUUGCAUCUAGAGUAA
#=GR bacteria.L.ferrooxidans-CF SS  .<<<<......>>>>>>>>....<<<<<<<<.........

bacteria.L.ferrooxidans-CF	UGGUCACCCUGUCUUUCUUUCGGGAAAGGCAUGACAGAAC
#=GR bacteria.L.ferrooxidans-CF SS  ........>>>>>>>>>.......<<<<<<<<<......<

bacteria.L.ferrooxidans-CF	CCGGCUUA
#=GR bacteria.L.ferrooxidans-CF SS	<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.L.japonicus-IFO12422 DE converted from brown dataset ct file

bacteria.L.japonicus-IFO12422		CGCAGAGCAAGGUGGUGGGCAACACCCACCCGGGGCAAC
#=GR bacteria.L.japonicus-IFO12422 SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.L.japonicus-IFO12422	CCGCGGGAAAGUGCCACAGAGAACAGACCGCCGCUCUCUC
#=GR bacteria.L.japonicus-IFO12422 SS  <<<.<>>...>>>>>............>>>>>.>>>>>>>

bacteria.L.japonicus-IFO12422	CGUUCAUUCGGGAAGAGGGGUAAGGGUGAAACGGUGGUGU
#=GR bacteria.L.japonicus-IFO12422 SS  .........<<<.<<<<.<<<..<<.......>>>>>>..

bacteria.L.japonicus-IFO12422	AAGAGACCACCAGCGUGCCGGGUGACCGGGGCGGCUAGGU
#=GR bacteria.L.japonicus-IFO12422 SS  .....<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<

bacteria.L.japonicus-IFO12422	AAACCCCACCUGGAGCAAGAUCAAGAAGCCGUUCCUCUUC
#=GR bacteria.L.japonicus-IFO12422 SS  ..<<<<<<<<<<......>>>>.....>>>>>>>>>>...

bacteria.L.japonicus-IFO12422	GGAGGAACGGUGCGCACACGUUCGAGGGCUGCUCGCCCGA
#=GR bacteria.L.japonicus-IFO12422 SS  .<<<<<<<<<<..>>>>>>....>>>>>>.aaaa<<<<<<

bacteria.L.japonicus-IFO12422	GUGUGCGGGUAGAUCGCCCGAGGCUGUCGGCAACGGCAGC
#=GR bacteria.L.japonicus-IFO12422 SS  <<<<<<.....<<<<......>>>>>>>>....<<<<<<<

bacteria.L.japonicus-IFO12422	CCUAGAUGGAUGGUCGCCAACCGGGGCCACGCAAGAAACC
#=GR bacteria.L.japonicus-IFO12422 SS  <.................>>>>>>>>>>>>....<<<<<<

bacteria.L.japonicus-IFO12422	CCGGCGA
#=GR bacteria.L.japonicus-IFO12422 SS	<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGA1 DE converted from brown dataset ct file

bacteria.LGA1		GAGGAAAGUCCGGGCAGCACAGAGCAAUGCACCGGUGAA
#=GR bacteria.LGA1 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGA1	UAGCCGGGUUCCGUCUUUGACGGAAACAGACAGUGCCACA
#=GR bacteria.LGA1 SS  ..<<<<<>>>>>>>>...<<<<<<<.<>>...>>>>>...

bacteria.LGA1	GAAAAUAACUGCCUUCCCCUCUCCUUUAGGAGAGGGUUGA
#=GR bacteria.LGA1 SS  ........>>>>>>>>>>>>>>>>....<<<<<<<<.<<<

bacteria.LGA1	GGUAGGGUUGAAAACGUGAGGUAAGAGCUCACGUCCCGAU
#=GR bacteria.LGA1 SS  <<<..<<.......>>>>>>.......<<<<<<>>>>>>>

bacteria.LGA1	AUGGUGACAUAUCGGGAGGGUAAACCUUGCAUGCUGAAAU
#=GR bacteria.LGA1 SS  >>>....<<<<<<<<<<.<<<..<<<<<<<<<<<<<...>

bacteria.LGA1	GCCACAUAGGUCAGCGCCUGAGAACUGCUCGUUCAAUGCU
#=GR bacteria.LGA1 SS  >>>......>>>>>>>...>>>>>>.aaaa<<<<<<<<<<

bacteria.LGA1	GAUGGGUAGGCAGAUUGAUCCCGGUUGGUAACUUCCGGGA
#=GR bacteria.LGA1 SS  <<<.....<<<<......>>>.>>>>>....<<<<<<<<.

bacteria.LGA1	CAGAUAAAUGAUAGCCACUAAUCCACCUUGCUAAGGCUAC
#=GR bacteria.LGA1 SS  ......................>>>>>>>>>....<<.<<

bacteria.LGA1	GGUGGACAGAACCCGGCUUA
#=GR bacteria.LGA1 SS	<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGA10 DE converted from brown dataset ct file

bacteria.LGA10		GAGGAAAGUCCGGGCUCCUUGGACAAACUGCCAGGUAGC
#=GR bacteria.LGA10 SS  .....>>>.>>>>>>>>>..AAAA.>>>>>>>>>>....

bacteria.LGA10	ACCUGGGCACAGCGAUGAGCUGUGACGGAAAGUGCCACAG
#=GR bacteria.LGA10 SS  .<<<<<>>>>>>>.....<<<<<<.<>>...>>>>>....

bacteria.LGA10	AAAACAAACCGCCAGUACUUCGGUACUGGUAAGGGUGAAA
#=GR bacteria.LGA10 SS  ........>>>>>>>>>>....<<<<<<<<..<<......

bacteria.LGA10	AGGUGGGGUAAGAGCCCACCGCGUCACCGGUAACGGUGGC
#=GR bacteria.LGA10 SS  .>>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<

bacteria.LGA10	GGCACGGUAAACCCCAGUUGGAGCAAGGCCAAAUAGGCGG
#=GR bacteria.LGA10 SS  <.<..<<<..<<<<<<<<<<<<<...>>>>......>>>>

bacteria.LGA10	CGAGAGACAGUCCUUCUCGAUCAAGACGCCGCGGGUUGGC
#=GR bacteria.LGA10 SS  >>.>>>>>.aaaa<<<<<........<<<<<<.....<<<

bacteria.LGA10	UGCUGGAGCGUGAUGGUGACAUCAUGCCGAGAGGAAUCAU
#=GR bacteria.LGA10 SS  <......>>>>>>>>....<<<<<<<<.............

bacteria.LGA10	CAUCCGGAUCUUUAAUCCGACAGAAUCCGGCUUA
#=GR bacteria.LGA10 SS	....>>>>>.....<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGA2 DE converted from brown dataset ct file

bacteria.LGA2		GAGGAAAGUCCGGGCCCCACAGAGCAGGAUGCCGGCUAA
#=GR bacteria.LGA2 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGA2	CGGCCGGGCGCAGCAAGCUUCGCAAGAAGCCCAAGGCGAC
#=GR bacteria.LGA2 SS  ..<<<<<>>>>>>>>>>>>>>....<<<<<<<<<<<<<.<

bacteria.LGA2	AGACACCAGUGCAACAGAAACAUACCGCCUAAGUCCGCAA
#=GR bacteria.LGA2 SS  >>......>>>>>...........>>>>>...>>>>....

bacteria.LGA2	GGACCGGCAAGGGUGAAAUCGUGCGGUAAGAGCGCACGGC
#=GR bacteria.LGA2 SS  <<<<.<<<..<<.......>>>>>>.......<<<<<<>>

bacteria.LGA2	CGUCCUGGUAACAGUGGCGGCGGGCAACCUCAUCCGGGGC
#=GR bacteria.LGA2 SS  >>>>>>>....<<<.<<<<<<.<<<.<<<<<<<<<<<<<.

bacteria.LGA2	AAGGCCAAAUAGGGGAGCAUUGGCGUGGCUCGCGUCGCUC
#=GR bacteria.LGA2 SS  ..>>>>......>>>>>>...>>>>>.aaaa<<<<<<<<<

bacteria.LGA2	CCGGGUAGGCUGCUAGAGGCCGUCGGCAACGACGGUCCCA
#=GR bacteria.LGA2 SS  <<.....<<<<......>>>>>>>>....<<<<<<<<...

bacteria.LGA2	GAGGAAUGGUUGCCCACGACAGAACCCGGCUUA
#=GR bacteria.LGA2 SS	........................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGA6 DE converted from brown dataset ct file

bacteria.LGA6		GAGGAAAGUCCGGGCUCCACAGGACAGAGUGGUCGGUAA
#=GR bacteria.LGA6 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGA6	CGCCGACCGGCCGAAAGGCUCGGGACAGGGCAACAGAAAG
#=GR bacteria.LGA6 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGA6	CAAACCGCCGCAUGGGACCGGGCCCCCGUCCAAGUCCAUG
#=GR bacteria.LGA6 SS  ....>>>>>>>>>>>>>>>>>>>....<<<<<<<<<<<<<

bacteria.LGA6	CGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAGC
#=GR bacteria.LGA6 SS  <<<<..<<.......>>>>>>.......<<<<<<>>>>>>

bacteria.LGA6	CAAGGUGACUUGACUGGCUAGGCAACCCCCACUCGGAGCA
#=GR bacteria.LGA6 SS  >>>>....<<<<<<<<.<<.<<<..<<<<<<<<<<<<<..

bacteria.LGA6	AGACCAAACAGGGAGCAGACGCGUUUUUCGAAACGCGUCG
#=GR bacteria.LGA6 SS  .>>>>.....>>>>>..>>>>>>>>>....<<<<<<<<<>

bacteria.LGA6	UGGGCUCGUCCGGCCCGCUAUCGACUCCCGGGUAGGUCGC
#=GR bacteria.LGA6 SS  >>>>>>.aaaa<<<<<<<......<<<<<.....<<<<..

bacteria.LGA6	UCGAACCGCCGAGCAAUCGUCGGUCUAGAUGAAUGGCCGU
#=GR bacteria.LGA6 SS  ....>>>>>>>>....<<<<<<<<................

bacteria.LGA6	CACCUGAUUCACAGAACCCGGCUUA
#=GR bacteria.LGA6 SS	................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGA8 DE converted from brown dataset ct file

bacteria.LGA8		GAGGAAAGUCCGGGCUCCACAGGACAGAGUGGUCGCUAA
#=GR bacteria.LGA8 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGA8	CGGCGACCGGCCGCAAGGCUCGGGAAAGUGCAACAGAAAG
#=GR bacteria.LGA8 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGA8	ACACCGCCUCCGCGAGCCCGUCUCGCGGCGGUAAGGGUGA
#=GR bacteria.LGA8 SS  ...>>>>>>>>>>>>>.....<<<<<<<<<<<..<<....

bacteria.LGA8	AAUGGUGCGGUAAGAGCGCACCAGCGGCGGGGUGACUCGC
#=GR bacteria.LGA8 SS  ...>>>>>>.......<<<<<<>>>>>>>>>....<<<<<

bacteria.LGA8	CGGCUCGGCAAACCCCACUCGGAGCAAGACCAAGCAGAGA
#=GR bacteria.LGA8 SS  <<.<<.<<<..<<<<<<<<<<<<<...>>>>.....>>>>

bacteria.LGA8	GGAGCUGCCUGCCACAAGGCGGCGGCACGGUUCGGUCCGG
#=GR bacteria.LGA8 SS  >..>>>>>.>>>>....<<<<<<<<<>>>>>>>.aaaa<<

bacteria.LGA8	ACCGUCGUUACUCUCGGGUAGGUCGCUGGAGGCGGCGAGC
#=GR bacteria.LGA8 SS  <<<<<.....<<<<<.....<<<<......>>>>>>>>..

bacteria.LGA8	AAUCGCCGUCCUAGAGAAAUGACCAUCGCCGCCCCAGGGG
#=GR bacteria.LGA8 SS  ..<<<<<<<<.................>>>>>>>...<<<

bacteria.LGA8	CUGGCACAGAACCCGGCUUA
#=GR bacteria.LGA8 SS	<.<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGB21 DE converted from brown dataset ct file

bacteria.LGB21		GAGGAAAGUCCGGGCAUCGACGGGCAGGAUGGUCUCUAA
#=GR bacteria.LGB21 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGB21	CGGAGACUGGGGGUAACCCUAAGGAAAGUGCAACAGAAAA
#=GR bacteria.LGB21 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGB21	UAUACCGCCGCCCGCCUCUGGCGGCACUCAGGCAGAAACG
#=GR bacteria.LGB21 SS  ....>>>>>>>>.>>>...<<<<<<.....>>>>>>>>>.

bacteria.LGB21	AAAGUUUCUGCCGGUAAGGGUGAAAUGGUGAGGUAAGAGC
#=GR bacteria.LGB21 SS  ...<<<<<<<<<<<<..<<.......>>>>>>.......<

bacteria.LGB21	UCACCAGUCCCGUGGUGACACGGGAGCUUGGCAAACCCCA
#=GR bacteria.LGB21 SS  <<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<

bacteria.LGB21	UCCGAUGCAAGGCCAAAAAGGGGGCUGCCGGAAAUGGCAG
#=GR bacteria.LGB21 SS  <<<<<<<...>>>>......>>>>>>>>>>....<<<<<<

bacteria.LGB21	CGAGGAUUGCCCAUCCUUUAACCCGGGUAGGCCGCAAGAG
#=GR bacteria.LGB21 SS  <>>>>>>.aaaa<<<<<<...<<<.....<<<<......>

bacteria.LGB21	GUCCAGGGCAACCGGGACCCAAAGAGAAAUGGUCACCGUC
#=GR bacteria.LGB21 SS  >>>>>>>....<<<<<<<<..................>>>

bacteria.LGB21	CCGCCACAGGCGGGAAACAGAACCCGGCUUA
#=GR bacteria.LGB21 SS	>>>>>...<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGB23 DE converted from brown dataset ct file

bacteria.LGB23		GAGGAAAGUCCGGGCUCCAUGAAGCAAGGGUGCCGGGUA
#=GR bacteria.LGB23 SS  .....>>>.>>>>>>>>>....AAAA.>>>>>>>>>>..

bacteria.LGB23	AUGCCCGGCCGGGGAAACCCGAGGGAAAGCGCCACAGAGA
#=GR bacteria.LGB23 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.LGB23	AGAGUCUGCCCCGAGCUUCGGGGUGAUGGUGAAACGGUGG
#=GR bacteria.LGB23 SS  .....>>>>>>>>>...<<<<<<<..<<.......>>>>>

bacteria.LGB23	GGUAAGAGCCCACCGCGGACCGGGCAACCGGGACGGCACG
#=GR bacteria.LGB23 SS  >.......<<<<<<>>>>>>>>>....<<<<<<<<.<..<

bacteria.LGB23	GCAAGCCCCACCCGGAGCAAUGCCGAAUAGGGGCCCCGCG
#=GR bacteria.LGB23 SS  <<..<<<<<<<<<<<<<...>>>>......>>>>>>>...

bacteria.LGB23	CGGGCUGGUCCCGGACUACGGUCCGCGAUACCGCCGCAGG
#=GR bacteria.LGB23 SS  .>>>>>>>>>>>>>>>....<<<<>>>.......<<<.<<

bacteria.LGB23	GAUGCUUCAGCCCAGGGGCCCGGGUUGGCAGCUUGAGCCC
#=GR bacteria.LGB23 SS  <<<aaaa<<<<<<.<<<<<<<.....<<<<......>>>>

bacteria.LGB23	GUCGGUAACGGCGGGCCUAGAGGAAUGGUCAUCCAGGGGG
#=GR bacteria.LGB23 SS  >>>>....<<<<<<<<.................>>>>>>>

bacteria.LGB23	CGCAAGCCCCCGGACAGAAUCCGGCUUA
#=GR bacteria.LGB23 SS	>....<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGB27 DE converted from brown dataset ct file

bacteria.LGB27		GAGGAAAGUCCGGGCAACACAGGGCAGCGUACUUCCUAA
#=GR bacteria.LGB27 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGB27	CGGGAAGGCCCCGAUUAGUCGGGGACAGAAAGUACCACAG
#=GR bacteria.LGB27 SS  ..<<<<<>>>>>>>....<<<<<<.<>>...>>>>>....

bacteria.LGB27	AAAACAAACUACCAUGCCCCGACGAGUCGGGGUAGGAAAA
#=GR bacteria.LGB27 SS  ........>>>>>.>>>>>>>>....<<<<<<<<<<<..<

bacteria.LGB27	GGUGAAAAGGUGAGGUAAGAGCUCACCGGCCUGGUGGUGA
#=GR bacteria.LGB27 SS  <.......>>>>>>.......<<<<<<>>>>>>>>>....

bacteria.LGB27	CAUCAGGCGCUGGCAAACCUUACGCGUUGAAAAGUCAAAU
#=GR bacteria.LGB27 SS  <<<<<<<<.<.<<<..<<<<<<<<<<<<<...>>>>....

bacteria.LGB27	AGGCCCCGAUCAUGAAUGGCUCGUUCAACUUCCACCCGAC
#=GR bacteria.LGB27 SS  ..>>>>>>>>..>>>>>.aaaa<<<<<..>>>>>>>>>>.

bacteria.LGB27	UUGUCGGGACGGAAUAUCGGGGUGGGUAGACCGAUUGAUC
#=GR bacteria.LGB27 SS  ...<<<<.<<<<<<.<<<<<<<<.....<<<<......>>

bacteria.LGB27	UCAUCAGCAAUGAUGUGACCAGAUAAAUGAUAAAGGCCCC
#=GR bacteria.LGB27 SS  >>>>>>....<<<<<<<<.................>>>>>

bacteria.LGB27	GACUUGUCGGGGUACAGAACCCGGCUUA
#=GR bacteria.LGB27 SS	>>....<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGB41 DE converted from brown dataset ct file

bacteria.LGB41		GAGGAAAGUCCGGGCUCCACGGAACAACGGUGCCGGGUA
#=GR bacteria.LGB41 SS  .....>>>.>>>>>AAAA...>>>>>.>>>>>>>>>>..

bacteria.LGB41	ACGCCCGGCGGCUCCUGCCUCGGCCGGAGUUAGGGAAAGU
#=GR bacteria.LGB41 SS  ...<<<<<>>>>>>>>>>....<<<<<<<<<.<>>...>>

bacteria.LGB41	GCCACAGAAGCAUACCGCCUGCCUUUGGGCGGGUAAGGGC
#=GR bacteria.LGB41 SS  >>>...........>>>>>>>>>....<<<<<<<..<<..

bacteria.LGB41	GAAAGGGUGCGGCAAGAGCGCACCGCGCGGCCGGUAACGG
#=GR bacteria.LGB41 SS  .....>>>>>>.......<<<<<<>>>>>>>>>....<<<

bacteria.LGB41	UCGCGGCACGGUAAACCCCACCGGGUGCAAGACCGAAUAG
#=GR bacteria.LGB41 SS  <<<<<.<..<<<..<<<<<<<<<aaaa...>>>>......

bacteria.LGB41	GGGCGGCAUAUGGGCCUGUUCCGGCUCGUCGCCCGGGUUG
#=GR bacteria.LGB41 SS  >>>>>>>....>>>>>.<<<<<<<<<<<<<<<<<.....<

bacteria.LGB41	GUCGCUUGAGGCGAAGGGCAACCUUCGUCCUAGAGGAAUG
#=GR bacteria.LGB41 SS  <<<......>>>>>>>>....<<<<<<<<...........

bacteria.LGB41	GUCGCCGAUCCCCUUUAAGGGGUGAACAGAACCCGGCUUA
#=GR bacteria.LGB41 SS	......>>>>>>>>...<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGB5 DE converted from brown dataset ct file

bacteria.LGB5		GAGGAAAGUCCGGGCUCCACAGGGCAAGAUGGUUGCUAG
#=GR bacteria.LGB5 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGB5	CGGCAACUGUCCCGCUAGUCGGGAUAAGGAAAGUGCCACA
#=GR bacteria.LGB5 SS  ..<<<<<>>>>>>>.....<<<<<<.<>>...>>>>>...

bacteria.LGB5	GAAAAGAAAACCCCCGCGUCUUGUGCGCGGGAGAGCUGAA
#=GR bacteria.LGB5 SS  ..........>>>>>>>>>.....<<<<<<<..<<.....

bacteria.LGB5	ACGGUGGUGUAAGAGACCACCAGCUUCGUCGUGAGGCGAA
#=GR bacteria.LGB5 SS  ..>>>>>>.......<<<<<<>>>>>>>>>....<<<<<<

bacteria.LGB5	GGCUUGGUAAACCCCAUCUGGAGCAAGGCCGAAUAGGGGA
#=GR bacteria.LGB5 SS  <.<<.<<<..<<<<<<<<<<<<<...>>>>......>>>>

bacteria.LGB5	GGGAUAAAGCUGCCCGCCUACCUCCCGGGUGUCGCCGCUA
#=GR bacteria.LGB5 SS  >>......>>.aaaa<<...<<<<<<......<<<<....

bacteria.LGB5	AAGCCCCACGGCAACGUGGGCGCGUAGAUAGAUGAUCACU
#=GR bacteria.LGB5 SS  ..>>>>>>>>....<<<<<<.<<.................

bacteria.LGB5	CUCGACAGAACCCGGCUUA
#=GR bacteria.LGB5 SS	..........<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGW17 DE converted from brown dataset ct file

bacteria.LGW17		GAGGAAAGUCCGGGCUCCAUAGGGCAGGAUGCCAGUUAA
#=GR bacteria.LGW17 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGW17	CGGCUGGGUGCUAUACGUCGCAAGACCAAGGCAACGGACA
#=GR bacteria.LGW17 SS  ..<<<<<>>>>>>>>.>>.....<<<<<.<<<<.<>>...

bacteria.LGW17	GUGCAACAGAGAACAGACCGCCGAUGGCUUUGGGCUGUGC
#=GR bacteria.LGW17 SS  >>>>>............>>>>>..>>>>>>>>>>>>>>.>

bacteria.LGW17	CGCUGCUUGCAGCGGAAAAGUCCCUUUAGCAGAGCGAUGA
#=GR bacteria.LGW17 SS  >>>>>....<<<<<<....>>>>>>>>..>>>>>>>>>>>

bacteria.LGW17	UCGUUUCGACGGCCAGCGUUUUGCGGGGGGCGAGGCCCAA
#=GR bacteria.LGW17 SS  >>>>....<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

bacteria.LGW17	AGAUCAGGUAAGGGUGAAACGGCGAGGUAAGAGCUCACCG
#=GR bacteria.LGW17 SS  <<.<<<<<<..<<.......>>>>>>.......<<<<<<>

bacteria.LGW17	CGCUGGCGGUAACGUUCAGCGGCACGGUGAACCCCAUCCG
#=GR bacteria.LGW17 SS  >>>>>>>>....<<<.<<<<<.<..<<<..<<<<<<<<<<

bacteria.LGW17	GAGCAAGACCAAAUAGGGAAGCAUUAGGCGUGGCCCGCGC
#=GR bacteria.LGW17 SS  <<<...>>>>......>>>>>>....>>>>>.aaaa<<<<

bacteria.LGW17	UGCUUCCGGGUAGGUUGCUUGAGCCUGUCGGUGACGGCAG
#=GR bacteria.LGW17 SS  <<<<<<<.....<<<<......>>>>>>>>....<<<<<<

bacteria.LGW17	GCCUAGAGGAAUGAUUGCCGAACCCCGCAAGGGGGGAACA
#=GR bacteria.LGW17 SS  <<.................>>>>>>>....<<<<<<<...

bacteria.LGW17	GAACCCGGCUUA
#=GR bacteria.LGW17 SS	...<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGW18 DE converted from brown dataset ct file

bacteria.LGW18		GAGGAAAGUCCGGGCUCCGCAGGGCAGUGUGGUUCCUAA
#=GR bacteria.LGW18 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGW18	CGGGAACCGGGAGUAAUCCCAGGGAAAGUGCCACAGAAAA
#=GR bacteria.LGW18 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGW18	CAUACCGCCGCAAGGAAGGCGACUUCGUUGCGGUAAGGGU
#=GR bacteria.LGW18 SS  ....>>>>>>>>>>>>>>....<<<<<<<<<<<<..<<..

bacteria.LGW18	GAAAAGGUGCGGUAAGAGCGCACCGCUUCUCUGGUGACAG
#=GR bacteria.LGW18 SS  .....>>>>>>.......<<<<<<>>>>>>>>>....<<<

bacteria.LGW18	GGAAGGCAGGGUAAACCCCACACGGAGCAAGAUCAAAUAA
#=GR bacteria.LGW18 SS  <<<<<.<..<<<..<<<<<<<<<<<<<...>>>>......

bacteria.LGW18	GGAGGCCCCAAAGCGGCCCGCUUUGCUUCCGGAAACGGAA
#=GR bacteria.LGW18 SS  >>>>>>>...>>>>.aaaa<<<<>>>>>>>>....<<<<<

bacteria.LGW18	GCGGGCUUCCGGGUAGAUCGCCAGAGGAGCCUGGCGACAG
#=GR bacteria.LGW18 SS  <<<<<<<<<<.....<<<<......>>>>>>>>....<<<

bacteria.LGW18	GCUUCCCAGAGGAAUGGCCAUCCGUUCGUUAGCAACCUUA
#=GR bacteria.LGW18 SS  <<<<<.................>>>>>>>>>>>>>>>...

bacteria.LGW18	CGGCUACUAAUGGAUGUACAGAACCCGGCUUA
#=GR bacteria.LGW18 SS	.<<<<<<<<<<<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGW23 DE converted from brown dataset ct file

bacteria.LGW23		GAGGAAAGUCCGGGCUCCAUAGGGCAAGGUGCCAGGUAA
#=GR bacteria.LGW23 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGW23	CGCCUGGGGGGCGCGAGCCCACGGACAGUGCAACAGAAAG
#=GR bacteria.LGW23 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGW23	CAAACCGCCUAUGUCACGGCUCGUGCAAACGGGUCGCGGC
#=GR bacteria.LGW23 SS  ....>>>>>..>>>>>>>>>>>>>....<<<<<<<<<<<<

bacteria.LGW23	AGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCCG
#=GR bacteria.LGW23 SS  <<<<..<<.......>>>>>>.......<<<<<<>>>>>>

bacteria.LGW23	GUGGCAACAUUCGGCGGCACGGCAAACCCCACCUGGAGCA
#=GR bacteria.LGW23 SS  >>>....<<<.<<<<<.<..<<<..<<<<<<<<<<<<<..

bacteria.LGW23	AGACCAAAUAGGGAAGCGCGCGGACCUUCGGGUCCGUUCC
#=GR bacteria.LGW23 SS  .>>>>......>>>>>>..>>>>>>>....<<<<<<<>>>

bacteria.LGW23	UGCUGCCCGCAGGGGCUUCCGGGUAGGUCGCUCGAGGCGC
#=GR bacteria.LGW23 SS  >>>.aaaa<<<<<<<<<<<<.....<<<<......>>>>>

bacteria.LGW23	ACGGCUGUCGUGCGUCCCAGAUGGAUGGUUGUCCUCGACA
#=GR bacteria.LGW23 SS  >>>.....<<<<<<<<........................

bacteria.LGW23	GAACCCGGCUUA
#=GR bacteria.LGW23 SS	...<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.LGW46 DE converted from brown dataset ct file

bacteria.LGW46		GAGGAAAGUCCGGGCACCAUAGGACAGGGUGGUGGGUAA
#=GR bacteria.LGW46 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.LGW46	CGCCCACCGGCCGUAAGGUUAGGGAAAGUGCCACAGAAAA
#=GR bacteria.LGW46 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.LGW46	UACACCGCCUAAGGGGAGCUGUUAGCGUUUGGCCUUUAGC
#=GR bacteria.LGW46 SS  ....>>>>>...>>>>>>>>>>>>>>>>>>>>>>>>>>>>

bacteria.LGW46	UCUUAGCCAGACAAUCGUCUGGCUAAUGGCUGACCGCUAA
#=GR bacteria.LGW46 SS  >>>>>>>>>>>>....<<<<<<<<<<<<<<<<<<<<<<<<

bacteria.LGW46	UAGCUAACAGCUUGCCCGGUAAGGGUGAAAAGGUGCGGUA
#=GR bacteria.LGW46 SS  <<<<<<<<<<<<<.<<<<<<..<<.......>>>>>>...

bacteria.LGW46	AGAGCGCACCAGCAGGCGAGGUGACUCGCCUGGCUCGGUA
#=GR bacteria.LGW46 SS  ....<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<.

bacteria.LGW46	AACCCCGCCCGGUGCAAGACCAAGCGGAGAGCAUGAGCCG
#=GR bacteria.LGW46 SS  .<<<<<<<<<<<<<...>>>>.....>>>>>..>>>>>>.

bacteria.LGW46	GUCCGGCUCGCUACGACUCUCGGGUAGGUCGCUAGAGGCC
#=GR bacteria.LGW46 SS  aaaa<<<<<<......<<<<<.....<<<<......>>>>

bacteria.LGW46	GCGGGCAACCGUGGUCGUAGAGGAAUGAUCGCCAAAUCGC
#=GR bacteria.LGW46 SS  >>>>....<<<<<<<<..................>>>>>>

bacteria.LGW46	UUCGGCGGAUACAGAAUCCGGCUUA
#=GR bacteria.LGW46 SS	....<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.M.avium DE converted from brown dataset ct file

bacteria.M.avium		CGGACGAGUUGGCCGGGCGGCCGCGGCUCGUAUCCCGAG
#=GR bacteria.M.avium SS  ....>>>>>>>>>>>>>>>>>>.>>>>>>>.....<<<<

bacteria.M.avium	UCGAGGAAAGUCCGGACUUCACAGAGCAGGGUGAUUGCUA
#=GR bacteria.M.avium SS  <<<....BBB.BBBBB>>>>...AAAA.>>>>>>>>>>..

bacteria.M.avium	ACGGCAAUCCGAGGUGACUCGCGGGAAAGUGCCACAGAAA
#=GR bacteria.M.avium SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.M.avium	ACAGACCGCCACCCUCGCGGUGGUAAGGGUGAAACGGUGC
#=GR bacteria.M.avium SS  .....>>>>>>>>.....<<<<<<..<<.......>>>>>

bacteria.M.avium	GGUAAGAGCGCACCAGCACCCCGGGUGACCGGGGUGGCUC
#=GR bacteria.M.avium SS  >.......<<<<<<>>>>>>>>>>....<<<<<<<<.<<.

bacteria.M.avium	GGCAAACCCCACCCGAAGCAAGGCCAAGAAGGCCGUGCCG
#=GR bacteria.M.avium SS  <<<..<<<<<<<<<<<<<...>>>>.....>>>>>>>>..

bacteria.M.avium	CCGGCACGGCCGCGCAGGCGUCCGAGGGUUGCUCGCCCGA
#=GR bacteria.M.avium SS  ...<<<<<<<<..>>>>>>....>>>>>>.aaaa<<<<<<

bacteria.M.avium	GCCUGCGGGUAGGCCGCUCGAGGCACCCGGUGACGGUGUG
#=GR bacteria.M.avium SS  <<<<<<.....<<<<......>>>>>>>>....<<<<<<<

bacteria.M.avium	UCCAGAUGGAUGGUCGCCGCCGCGCCGCCGGUUUUCCGGC
#=GR bacteria.M.avium SS  <..........<<<<<<<>>>>>>>>>>>>>....<<<<<

bacteria.M.avium	GGCGCGGAACAGAAUCCGGCUUACAGGCCAACUCGUCCG
#=GR bacteria.M.avium SS	<<<<<<<<......bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.M.luteus DE converted from brown dataset ct file

bacteria.M.luteus		GAGGAAAGUCCGGGCACCGCAGAGCAGGAUGGUGGACAA
#=GR bacteria.M.luteus SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.M.luteus	CAUCCACCCGGGGCGACCCGCGGGCCAGUGCCACAGAGAG
#=GR bacteria.M.luteus SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.M.luteus	AAGACCGCCUCCGCGCCGCUGCGCGGCGGUAAGGGUGAAA
#=GR bacteria.M.luteus SS  ....>>>>>>>>>>>>....<<<<<<<<<<..<<......

bacteria.M.luteus	GGGUGGUGUAAGAGACCACCAGCGGCCCCGGUGACGGGGC
#=GR bacteria.M.luteus SS  .>>>>>>.......<<<<<<>>>>>>>>>>....<<<<<<

bacteria.M.luteus	CGGCUCGGUAAACCCCAUCCGGUGCAAGGCCGAACAGGAC
#=GR bacteria.M.luteus SS  <<.<<.<<<..<<<<<<<<<<<<<...>>>>.....>>>>

bacteria.M.luteus	GCGUCACGAGGGCGGCUCGCCCCAGCGUCCGGGUUGGCCG
#=GR bacteria.M.luteus SS  >>.....>>>>>>.aaaa<<<<<<<<<<<<.....<<<<.

bacteria.M.luteus	CUCGAGCCCGCCAGCGAUGGCGGGCCCAGAUGGAUGGCCG
#=GR bacteria.M.luteus SS  .....>>>>>>>>....<<<<<<<<...............

bacteria.M.luteus	UCACCUCGCGCGGGGCAACGCGCGCGAGGCACAGAAUCCG
#=GR bacteria.M.luteus SS  ..>>>>>>>>>>>>....<<<<<<<<<<<<......<<<<

bacteria.M.luteus	GCUUAC
#=GR bacteria.M.luteus SS	<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.M.xanthus DE converted from brown dataset ct file

bacteria.M.xanthus		GAGGAAAGUCCGGGCUCCAGAGGGCAGGGUGCUGGCUAA
#=GR bacteria.M.xanthus SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.M.xanthus	CGGCCAGUCGAGGCGACUCGCAGGAAAGUGCCACAGAAAA
#=GR bacteria.M.xanthus SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.M.xanthus	CAGACCGCCCGUUCCGAAAGGGGCGGGUAAGGGUGAAACG
#=GR bacteria.M.xanthus SS  ....>>>>>>>>>>>....<<<<<<<<<..<<.......>

bacteria.M.xanthus	GUGCGGUAAGAGCGCACCGCGUCCGGGGUGACUCGGACGG
#=GR bacteria.M.xanthus SS  >>>>>.......<<<<<<>>>>>>>>>....<<<<<<<<.

bacteria.M.xanthus	CUCGGUAAACCCCGCCUGGAGCAAGAGCCAAUAGGAGCGC
#=GR bacteria.M.xanthus SS  <..<<<..<<<<<<<<<<<<<...>>>>......>>>>>>

bacteria.M.xanthus	GUCCUCGCCGUACGGAGGACAGGGAUGGCCCGUCCCAUGC
#=GR bacteria.M.xanthus SS  >>>>>..>>....<<<<<<<.>>>>>.aaaa<<<<<..<<

bacteria.M.xanthus	GUUCGGGUUGCUCGCUGAUGAGGCCCCUGGGCAACCAGGG
#=GR bacteria.M.xanthus SS  <<<<.....<<<<........>>>>>>>>......<<<<<

bacteria.M.xanthus	CCCUUAGAUGAAUGUUCACCGCCCAUCCCGAAAGGGGUGG
#=GR bacteria.M.xanthus SS  <<<.................>>>>>>>>>....<<<<<<<

bacteria.M.xanthus	GAACAGAAUCCGGCUUA
#=GR bacteria.M.xanthus SS	<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.N.albus DE converted from brown dataset ct file

bacteria.N.albus		CACAGGACAGGGUGGUGGCUAACGGCCACCCGGGGUGAC
#=GR bacteria.N.albus SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.N.albus	CCGCGGGACAGUGCCACAGAGAACAGACCGCCGCUACCCU
#=GR bacteria.N.albus SS  <<<.<>>...>>>>>............>>>>>>>>>>>..

bacteria.N.albus	CCAGGUAGCGGUAAGGGUGAAACGGUGGGGUAAGAGCCCA
#=GR bacteria.N.albus SS  ...<<<<<<<<<..<<.......>>>>>>.......<<<<

bacteria.N.albus	CCAGUCCUCGUGGUGACACGAGGAGCUAGGUAAACCCCAC
#=GR bacteria.N.albus SS  <<>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<

bacteria.N.albus	CCGGAGCAAGACCAGACAGCGUACGACGGUGUUAGUUCAC
#=GR bacteria.N.albus SS  <<<......>>>>.....>>>>>>..>>>>>......<<<

bacteria.N.albus	UGGGAGGGCGGUCCGCCCGAGUGCGCGGGUAGGUUGCUAG
#=GR bacteria.N.albus SS  <<..>>>>>.aaaa<<<<<.<<<<<<.....<<<<.....

bacteria.N.albus	AGGCCAUCGGCAACGAUGGUCCGAGAUGGAUGGUCGCCGA
#=GR bacteria.N.albus SS  .>>>>>>>>....<<<<<<<<...................

bacteria.N.albus	CU
#=GR bacteria.N.albus SS	..

//
# STOCKHOLM 1.0

#=GS bacteria.N.europaea DE converted from brown dataset ct file

bacteria.N.europaea		GAAGCCGGUCAGACAGUCGCUGCCUGGUGACAGGGAGAG
#=GR bacteria.N.europaea SS  >>>>>>>>>>>BBBBBBB.>>>>>>......<<<<<<..

bacteria.N.europaea	GAAAGUCCGGGCUCCACAGAGCAGGAUGCCGGUUAACGGC
#=GR bacteria.N.europaea SS  ..>>>.>>>>>>>>>...AAAA.>>>>>>>>>>.....<<

bacteria.N.europaea	CGGCCGCCGUGAGGUGAGGAACAGGGCCACAGAGACGAGC
#=GR bacteria.N.europaea SS  <<<>>>>>....<<<<.<>>...>>>>>...........>

bacteria.N.europaea	GUAUUAAGUUACGGUGAAACGCGGUAACCUCCAUCCGGAG
#=GR bacteria.N.europaea SS  >>>>....<<<<<.........<<<..<<<<<<<<<<<<<

bacteria.N.europaea	CAAGAUCAAAUAGGCAGAUGAUGACGCUGCUCGCUGAGUC
#=GR bacteria.N.europaea SS  ...>>>>......>>>>>>...>>>>>.aaaa<<<<<<<<

bacteria.N.europaea	UGCGGGUAGAUCGCUCGAGCACACGGGUAACUGUAUGCCU
#=GR bacteria.N.europaea SS  <<<.....<<<<......>>>>>>>>....<<<<<<<<..

bacteria.N.europaea	AGAGGAAUGACUGUCCACGACAGAACCCGGCUUAUCGGCC
#=GR bacteria.N.europaea SS  ........bbbbbbb..........<<<<<<<<.<.<<<<

bacteria.N.europaea	GGCUUC
#=GR bacteria.N.europaea SS	<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.N.fulvus-KCTC9580 DE converted from brown dataset ct file

bacteria.N.fulvus-KCTC9580		CGAAGGGCAGCGUGGUGGGUAACGCCCACCCGGGGCAAC
#=GR bacteria.N.fulvus-KCTC9580 SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.N.fulvus-KCTC9580	CCGCGGGACAGUGCCACAGAGAACAGACCGCCAGCGGCCU
#=GR bacteria.N.fulvus-KCTC9580 SS  <<<.<>>...>>>>>............>>>>>..>>>>>>

bacteria.N.fulvus-KCTC9580	GAGCGAAUUCCGGUUCGCCUCAGGUGCGGGUGAGGGUGAA
#=GR bacteria.N.fulvus-KCTC9580 SS  >>>>>>>>....<<<<<<.<<<<.<<<<<<<..<<.....

bacteria.N.fulvus-KCTC9580	ACGGUGGUGUAAGAGACCACCAGCUCCGCAGGUGACUGCG
#=GR bacteria.N.fulvus-KCTC9580 SS  ..>>>>>>.......<<<<<<>>>>>>>>>>....<<<<<

bacteria.N.fulvus-KCTC9580	GAGGCUCGGUAAACCCCACGUGGAGCAAGGCCAAGAAGGA
#=GR bacteria.N.fulvus-KCTC9580 SS  <<<.<<.<<<..<<<<<<<<<<......>>>>.....>>>

bacteria.N.fulvus-KCTC9580	CGGCGGGCAACCACCGUCCGCGCGAGCGUUCGAGGGCUGC
#=GR bacteria.N.fulvus-KCTC9580 SS  >>>>>>....<<<<<<<<<..>>>>>>....>>>>>>.aa

bacteria.N.fulvus-KCTC9580	CCGCCCGAGCUCGCGGGUAGGCCGCUGGAGGCUGCCGGCA
#=GR bacteria.N.fulvus-KCTC9580 SS  aa<<<<<<<<<<<<.....<<<<......>>>>>>>>...

bacteria.N.fulvus-KCTC9580	ACGGCAGCCCUAGAUAGAUGAUCGCCAGC
#=GR bacteria.N.fulvus-KCTC9580 SS	.<<<<<<<<....................

//
# STOCKHOLM 1.0

#=GS bacteria.N.plantarum DE converted from brown dataset ct file

bacteria.N.plantarum		CACAGAGCAGGGCGGUGGGUAACACCCACCCGGGGCAAC
#=GR bacteria.N.plantarum SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.N.plantarum	CCGCGGGACAGUGCCACAGAGAACAGACCGCCUCCCGAAU
#=GR bacteria.N.plantarum SS  <<<.<>>...>>>>>............>>>>>........

bacteria.N.plantarum	CCAGCGCCACCGGACGACGGAGGUAAGGGUGAAACGGUGG
#=GR bacteria.N.plantarum SS  ...........>>.....<<.<<<..<<.......>>>>>

bacteria.N.plantarum	AGCAAGAGACCACCAGCAUGCCGGGCGACCGGCGUGGCUA
#=GR bacteria.N.plantarum SS  >.......<<<<<<>>>>>>>>>>....<<<<<<<<.<<.

bacteria.N.plantarum	GGCAAACCCCGCCCGGAGCAAGAUCAGACAGCACACGCAG
#=GR bacteria.N.plantarum SS  <<<..<<<<<<<<<<......>>>>.....>>>>>>...>

bacteria.N.plantarum	GUUCCGACCGGAAGGGCUGCUCGCCCGAGUGUGCGGGUAG
#=GR bacteria.N.plantarum SS  >>....<<<..>>>>>>.aaaa<<<<<<<<<<<<.....<

bacteria.N.plantarum	AUCGCUGGAGGCCGUCGGCAACGGCGGUCGUAGAUGGAUG
#=GR bacteria.N.plantarum SS  <<<......>>>>>>>>....<<<<<<<<...........

bacteria.N.plantarum	GUCGCCCCUCCUCCCGCAAGGGCGGAGG
#=GR bacteria.N.plantarum SS	......>>>>>>>>>....<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.N.pyridinolyticus DE converted from brown dataset ct file

bacteria.N.pyridinolyticus		CACAGGGCAAGGUGGUGGGUAACACCCACCCGGGGCAAC
#=GR bacteria.N.pyridinolyticus SS  >...AAAA.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.N.pyridinolyticus	CCGCGGGACAGUGCCACAGAGAACAGACCGCCCCUGCGUG
#=GR bacteria.N.pyridinolyticus SS  <<<.<>>...>>>>>............>>>>>>>>>....

bacteria.N.pyridinolyticus	CAGGGGUAAGGGUGAAACGGCGGUGUAAGAGACCACCAGC
#=GR bacteria.N.pyridinolyticus SS  <<<<<<<..<<.......>>>>>>.......<<<<<<>>>

bacteria.N.pyridinolyticus	GACCGGGGCGACCCGGCCGGCUCGGCAAACCCCACCUGGA
#=GR bacteria.N.pyridinolyticus SS  >>>>>>>....<<<<<<<<.<<.<<<..<<<<<<<<<<..

bacteria.N.pyridinolyticus	GCAAGGUCAAGAAGUCCGGUGCUCUCACCGGACGCGCGCA
#=GR bacteria.N.pyridinolyticus SS  ....>>>>.....>>>>>>>>....<<<<<<<<..>>>>>

bacteria.N.pyridinolyticus	CGACUGAGGGCGGCCCGCCCGAGUGCGCGGGUAGACCGCU
#=GR bacteria.N.pyridinolyticus SS  >.....>>>>>.aaaa<<<<<.<<<<<<.....<<<<...

bacteria.N.pyridinolyticus	GGAGGGCGUCGGCAACGGCGCUCGUAGAUGGAUGGUCGCC
#=GR bacteria.N.pyridinolyticus SS  ...>>>>>>>>....<<<<<<<<.................

bacteria.N.pyridinolyticus	ACGCUUCGGCGUU
#=GR bacteria.N.pyridinolyticus SS	>>>>....<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Oscillatoria-PCC7515 DE converted from brown dataset ct file

bacteria.Oscillatoria-PCC7515		GGGGAGGAAAGUCCGGGCUCCCAAAAGGCCAAGCUUGCU
#=GR bacteria.Oscillatoria-PCC7515 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Oscillatoria-PCC7515	GGGUAACGCCCAGUGCGAGCGAUCGCGAGGAUAGUGCCAC
#=GR bacteria.Oscillatoria-PCC7515 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Oscillatoria-PCC7515	AGAAAUAUACCGCCCUCUAGAUAGAAGAUUUCUCCUGUUU
#=GR bacteria.Oscillatoria-PCC7515 SS  .........>>>>>>>>>>>>>>>>>>....<<<<<<<<<

bacteria.Oscillatoria-PCC7515	AGUGGGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAG
#=GR bacteria.Oscillatoria-PCC7515 SS  <<.<<<<<..<<.......>>>>>>.......<<<<<<>>

bacteria.Oscillatoria-PCC7515	CAGUGUCGUGAGGCACUGGCUAGGUAAACCCCGGCUGGGA
#=GR bacteria.Oscillatoria-PCC7515 SS  >>>>>>>....<<<<<<<.<<.<<<..<<<<<<<<<aaaa

bacteria.Oscillatoria-PCC7515	GCAAGGUCGGAGGAAUCAUGGUUGGUCUUUUUCCAGUUCC
#=GR bacteria.Oscillatoria-PCC7515 SS  a...>>>.....>>>>>..>>>.<<<<<<<.<<<<<<<<.

bacteria.Oscillatoria-PCC7515	GUCGCACUAUAGGUAAAUCUAUGGUGUUAGGUGUACCGCA
#=GR bacteria.Oscillatoria-PCC7515 SS  ...>>>>>>>>>>....<<<<<<<<<<.......<<<...

bacteria.Oscillatoria-PCC7515	AGAGGUGUCUGGUAACAGGCAUCCCAGAUAGAUAACUGCC
#=GR bacteria.Oscillatoria-PCC7515 SS  ...>>>>>>>>....<<<<<<<<.................

bacteria.Oscillatoria-PCC7515	CUCUUAACUGGUUUCAGCUAAGGGAACAGAACCCGGCUUA
#=GR bacteria.Oscillatoria-PCC7515 SS	>>>>>>>>>>....<<<<<<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.P.acanthamoebae DE converted from brown dataset ct file

bacteria.P.acanthamoebae		GAGGAAAGUCCGGACUUUAUAGGAGAGGAUGCCAGUGAA
#=GR bacteria.P.acanthamoebae SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.P.acanthamoebae	AGACUGGGGGCCGCAAGGCUACGGAAAGUGCCACAGAAAA
#=GR bacteria.P.acanthamoebae SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.P.acanthamoebae	CAAACCGCUAACAAGCUAUGCUUGUUAGAUAGGGUGAAAU
#=GR bacteria.P.acanthamoebae SS  ....>>>>>>>>>>>>...<<<<<<<<<<..<<.......

bacteria.P.acanthamoebae	GCCUGCUUUAGGAGCAUGGCCUUAUCUAGAGAAAUUUAGA
#=GR bacteria.P.acanthamoebae SS  >>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<<

bacteria.P.acanthamoebae	AAGUGGUAAACCCCAUCCAAAGCAAGACGGAAAUAAAGCG
#=GR bacteria.P.acanthamoebae SS  ..<.<<<..<<<<<<<<<<<<<...>>>.....>>>>>..

bacteria.P.acanthamoebae	AUACAGUUCUCCGCUGUGCUUUAGAAAAGUCGCUUGAGGG
#=GR bacteria.P.acanthamoebae SS  .>>>>>>.aaaa<<<<<<<<<<<.....<<<......>>>

bacteria.P.acanthamoebae	UUUCGGUGACGGCGCCCCUAGAGGAAUGAUUGCUCGUCUG
#=GR bacteria.P.acanthamoebae SS  >>>>>....<<<<<<<<.................>>>>>>

bacteria.P.acanthamoebae	CUUUGCAGACCGACAGAACCCGGCUUA
#=GR bacteria.P.acanthamoebae SS	....<<<<<<........<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.P.gingivalis DE converted from brown dataset ct file

bacteria.P.gingivalis		CAGCAGAUCGGUCUGUCGCUCACUCUUUCGAGAGUGGGA
#=GR bacteria.P.gingivalis SS  >>>>>>>>>>>>>>>>>.>>>>>>>>....<<<<<<<<.

bacteria.P.gingivalis	GGAACGUCCGGGCAACGCAGAGCACCAUCCUUCCUAACAG
#=GR bacteria.P.gingivalis SS  ...BBB.BBBBB>>>>...AAAA.>>>>>>>>>>.....<

bacteria.P.gingivalis	GAAGUUACUCGUGAGGGUAAAGGAGCGUAGAAGAGAAUGA
#=GR bacteria.P.gingivalis SS  <<<<>>>>>>....<<<<<<>>..>>>>>...........

bacteria.P.gingivalis	CCGCCAUUUUCCAUGAGUUGUCUGUGCUUCGGUACGGACU
#=GR bacteria.P.gingivalis SS  >>>>>...>>>>>>>..>>>>>>>..........<<<<<<

bacteria.P.gingivalis	ACGUGGAGGGUAAGGGUGAGAAGGUGGGGUAAGAGCCUAC
#=GR bacteria.P.gingivalis SS  <<<<<<<<<<<..<<.......>>>>>>.......<<<<<

bacteria.P.gingivalis	CGGAUGCAGCGGUGACGCUGCAUGCCGUACGUCUGAUGGG
#=GR bacteria.P.gingivalis SS  <>>>>>>>>>>....<<<<<<<<.<<.<<<<<<<<<<<<<

bacteria.P.gingivalis	UUGUAAGAUCAUGUAUACCGGCGCAUGUAGGGUGGCUCGC
#=GR bacteria.P.gingivalis SS  <<<...>>>>.......>>>>>>......>>>>.aaaa<<

bacteria.P.gingivalis	CCGAUGCCGGGGGGUAGAUCGCUGGAGCCAUGCGGUGACG
#=GR bacteria.P.gingivalis SS  <<..<<<<<<......<<<<......>>>>>>>>....<<

bacteria.P.gingivalis	CACGGCCAAGAUAAAUGACAGACGCUCUGGCUACGUGUGG
#=GR bacteria.P.gingivalis SS  <<<<<<..........<<<<<<<>>>>>>>>>>....<<<

bacteria.P.gingivalis	CCGUGAGUACAGAACCCGGCUUACAGAUCUGCUGCUUUU
#=GR bacteria.P.gingivalis SS	<<<.<<<<......bbbbbbbb.<.<<<<<<<<<.....

//
# STOCKHOLM 1.0

#=GS bacteria.P.hollandica DE converted from brown dataset ct file

bacteria.P.hollandica		GCGGAGAAGUAGGCGAGGCGGCUGCGGAUUCGGCGGCGA
#=GR bacteria.P.hollandica SS  ....>>>>>>>>>.>>>>>>>>>.>>>>>>>>>>>>>..

bacteria.P.hollandica	UGCUGACUGAAUUCGAGGAAAGUCCGGGCUUCCGAAAGAC
#=GR bacteria.P.hollandica SS  .<<<<.<<<<<<<<<....BBB.BBBBB>>>>>...AAAA

bacteria.P.hollandica	CACACUUGCUGGGUAACGCCCAGUGCGCGUGAGCGUGAGG
#=GR bacteria.P.hollandica SS  A.>>>.>>>>>>>.....<<<<<>>>>>....<<<<.<>>

bacteria.P.hollandica	AUAGUGCCACAGAAAAAUACCGCCCUGGCCCUUCGGGGUU
#=GR bacteria.P.hollandica SS  ...>>>>>...........>>>>>>>>>>>>>>>>>>>>>

bacteria.P.hollandica	UCGGUGUGGUGGGUCAGGCUCCUGGAGCCGAACCGCUGUC
#=GR bacteria.P.hollandica SS  >>>>>>>>>>>>>>>.>>>>>...<<<<<<<<<<<<<<.<

bacteria.P.hollandica	CCUGGAAUCUGUGAGUGAAGGGCUGGGGUAAGGGUGCAAA
#=GR bacteria.P.hollandica SS  <<<<<<<<<<.....<<<<<<<<<<<<<<..<<.......

bacteria.P.hollandica	GGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUGCUGG
#=GR bacteria.P.hollandica SS  >>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<.

bacteria.P.hollandica	CUCGGUAAACCCCGGUGGGACGCAAGGUCGGAGGAACUAG
#=GR bacteria.P.hollandica SS  <<.<<<..<<<<<<<<<<<<<<...>>>....>>>>>..>

bacteria.P.hollandica	GGUUGGUCUUUUUCCCGUUCCGUACAGGGUCAAUCUUCGG
#=GR bacteria.P.hollandica SS  >>>.aaaaa...<<<<<<<<<...>>>>>>>>>>>....<

bacteria.P.hollandica	GUUGGCGCUGCGGUGUACCGCUAGAGGUGUCUGGUAACAG
#=GR bacteria.P.hollandica SS  <<<<<<<<<<......<<<......>>>>>>>>....<<<

bacteria.P.hollandica	GCAUUCGAGAUAGAUAGCUGCCCCUAAGUCUGGAGACAGA
#=GR bacteria.P.hollandica SS  <<<<<..........<<<<<<<>>>>>>>>>>....<<<<

bacteria.P.hollandica	UGAGGGAACAGAACCCGGCUUAUGUCCAACUUCUUCGUUU
#=GR bacteria.P.hollandica SS  <<<<<<.......bbbbbbbb.<.<<<<<<<<<<......

bacteria.P.hollandica	UC
#=GR bacteria.P.hollandica SS	..

//
# STOCKHOLM 1.0

#=GS bacteria.P.innocua DE converted from brown dataset ct file

bacteria.P.innocua		CACAGAGCAGGGUGGUGGGUAACGCCCACCCGGGGUGAC
#=GR bacteria.P.innocua SS  A...>>>>.>>>>>>>>>>.....<<<<<>>>>>....<

bacteria.P.innocua	CCGCGGGCCAGUGCCACAGAGAACAGACCGCCCCGAUGCG
#=GR bacteria.P.innocua SS  <<<.<>>...>>>>>............>>>>>>>>>>>>>

bacteria.P.innocua	CCGGUUCGCCGACGUGCCGGGGUAAGGGUGAAACGGCGGU
#=GR bacteria.P.innocua SS  >>>>....<<<<<<<<<<<<<<<..<<.......>>>>>>

bacteria.P.innocua	GUAAGAGACCACCGGCACCGUGAGCGAUCACGGUGGCCAG
#=GR bacteria.P.innocua SS  .......<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<

bacteria.P.innocua	GUAAACCCCACCCGGAGCAAGACCAGACAGCAGGCGGGUU
#=GR bacteria.P.innocua SS  <<..<<<<<<<<<a......>>>>.....>>>>>>>>>>.

bacteria.P.innocua	GCUCGCCCUUGCCUGCGGGUAGGUCGCUGGAGGCCGUCAG
#=GR bacteria.P.innocua SS  <<<<<<<<..<<<<<<.....<<<<......>>>>>>>>.

bacteria.P.innocua	CAAUGACGGUCCGAGAUGGAUGACCGUCCCACG
#=GR bacteria.P.innocua SS	...<<<<<<<<......................

//
# STOCKHOLM 1.0

#=GS bacteria.P.marinus DE converted from brown dataset ct file

bacteria.P.marinus		GAAAGCAGGAGAGGUGAUCGCAAUCGAGAUUUAUCGCGU
#=GR bacteria.P.marinus SS  >>>>>>>>>.>>>>>>>>>.>>>>>>>>>>>>>>>>>>.

bacteria.P.marinus	UUCCGCAAUAAACUCUCGGUUGAGGAAAGUCCGGGCUCCC
#=GR bacteria.P.marinus SS  ...<<<<<<<<<.<<<<<<<<<....BBB.BBBBB>>>>>

bacteria.P.marinus	AGAUGGUCCAACUUGCUGGGUAACUCCCAGUGCGGGUGAC
#=GR bacteria.P.marinus SS  ...AAAAA.>>>.>>>>>>>.....<<<<<>>>>>....<

bacteria.P.marinus	CGUGAGGAUAGUGCCACAGAAACACACCGCCGAUGUCUCA
#=GR bacteria.P.marinus SS  <<<.<>>...>>>>>...........>>>>>>>>>>.>>.

bacteria.P.marinus	UAGAGCACAGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCA
#=GR bacteria.P.marinus SS  ..<<<<<<<<<<..<<.......>>>>>>.......<<<<

bacteria.P.marinus	CCAGCAGUAUCGAGAGGUACUGGCUUGGUAAACCCCGGUU
#=GR bacteria.P.marinus SS  <<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<<<<

bacteria.P.marinus	GGGUGCAAGGCAAAGGUUUUAGGAUGACCAUUUUGCCUAU
#=GR bacteria.P.marinus SS  <<<<<...>>>...>>>>>..>>..aaaaa......<<..

bacteria.P.marinus	UUCCUAUUUAAAGCCGCUCGAGGCUGUUGGAGACAACAGU
#=GR bacteria.P.marinus SS  .<<<<<......<<<......>>>>>>>>....<<<<<<<

bacteria.P.marinus	CCCAGAUAGAUGAUCACCCACUAACCAAUUUUGGAUAGUG
#=GR bacteria.P.marinus SS  <..........<<<<<<<>>>>>>>>>....<<<<<<<<<

bacteria.P.marinus	AACAGAACCCGGCUUACUUCCUGCUUUC
#=GR bacteria.P.marinus SS	.......bbbbbbbb.<.<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.P.maris DE converted from brown dataset ct file

bacteria.P.maris		GAGGAAAGUCCGGGCUCCACAGGGCACGGUGGUGGGUAA
#=GR bacteria.P.maris SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.P.maris	CGCCCACCGUCCGCGAGGACAGGGAAAGUGCAACAGAAAG
#=GR bacteria.P.maris SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.P.maris	UAAACCGCCGGGCCAGUUCGCUGGCCAGGUAAGGGUGAAA
#=GR bacteria.P.maris SS  ....>>>>>>>>>>>>....<<<<<<<<<<..<<......

bacteria.P.maris	CGGUGCGGUAAGAGCGCACCAGCAGACCGGGUGACCGGUC
#=GR bacteria.P.maris SS  .>>>>>>.......<<<<<<>>>>>>>>>>....<<<<<<

bacteria.P.maris	UGGCUAGGUAAACCCCACCGGGUGCAAGACCAAGCAGGGA
#=GR bacteria.P.maris SS  <<.<<.<<<..<<<<<<<<<<<<<...>>>>.....>>>>

bacteria.P.maris	GCAGUUCUGGUUCGCCAGAACACGGAUCGGCCCGAUCCGU
#=GR bacteria.P.maris SS  >..>>>>>>>....<<<<<<<>>>>>>>.aaaa<<<<<<<

bacteria.P.maris	UACGACUUCCGGGUCGGUCGCGCGAGGCUGCAGGCAACUG
#=GR bacteria.P.maris SS  .....<<<<<.....<<<<......>>>>>>>>....<<<

bacteria.P.maris	CGGUCCCAGAUAAAUGGCCACUCUCGACAGAACCCGGCUU
#=GR bacteria.P.maris SS  <<<<<...........................<<<<<<<<

bacteria.P.maris	A
#=GR bacteria.P.maris SS	.

//
# STOCKHOLM 1.0

#=GS bacteria.P.staleyi DE converted from brown dataset ct file

bacteria.P.staleyi		GAGGAAAGUCCGGGCUCCACAGGACAGGGUGGUCGAUAA
#=GR bacteria.P.staleyi SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.P.staleyi	CGUCGACCGGUCGUGAGAUCAGGGACAGUGCCACAGAAAA
#=GR bacteria.P.staleyi SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.P.staleyi	CAGACCGCCGCUGCGGGCAUGAGCCCCCGUCAAGGUUUGA
#=GR bacteria.P.staleyi SS  ....>>>>>>>>>>>>>>>>>>>>>........<<<<<<.

bacteria.P.staleyi	UUGUCUGCAUGCGGUAAGGGUGAAACGGUGCGGUAAGAGC
#=GR bacteria.P.staleyi SS  .<<<<<<<<.<<<<<..<<.......>>>>>>.......<

bacteria.P.staleyi	GCACCAGCAGUCGAGGCGACUCGGCUGGCUAGGUAAACCC
#=GR bacteria.P.staleyi SS  <<<<<>>>>>>>>>>....<<<<<<<<.<<.<<<..<<<<

bacteria.P.staleyi	CGCCCGGAGCAAGACCAAGCAGAGAGCAUGUUGUCGGUGU
#=GR bacteria.P.staleyi SS  <<<<<<<<<...>>>>.....>>>>>...>>>>>>>>>..

bacteria.P.staleyi	CACAGCCGACAGCCGGAAUCGGUUCGGUUUCGUAUGACUC
#=GR bacteria.P.staleyi SS  ....<<<<<<<<<>>>>>>>.aaaa<<<<<<<.....<<<

bacteria.P.staleyi	UCGGGUAGGUUGCCGGAGCUAGCGAGCAAUUGCUAGCCUA
#=GR bacteria.P.staleyi SS  <<.....<<<<......>>>>>>>>....<<<<<<<<...

bacteria.P.staleyi	GAGAAAUGGUCGUCAGACGUUUUCGAUCCGUCGAAGAGCC
#=GR bacteria.P.staleyi SS  ..............>>>>>>>>>>>>....<<<<<<<<<<

bacteria.P.staleyi	CAACAGAACCCGGCUUA
#=GR bacteria.P.staleyi SS	<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PF101 DE converted from brown dataset ct file

bacteria.PF101		GAGGAAAGUCCGGGCUCCAUAGGGCAGGGCGCUCGUCGA
#=GR bacteria.PF101 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>>..

bacteria.PF101	GACUGGCGGCGGAAGUUCGCCAGUCAAGGCGAGGGAGUUG
#=GR bacteria.PF101 SS  >>>>>>>>>.......<<<<<<<<<..<<<<.<<>>>>>>

bacteria.PF101	CUCCGGCGAGAUGCUGGGGCAACUUCGGAAAGUGCCACAG
#=GR bacteria.PF101 SS  >>>>>>>>...<<<<<<<<<<<<<.<>>...>>>>>....

bacteria.PF101	AAACCAUACCGCCGUCGGGCUAAGCGGCACUGUGGCUUCC
#=GR bacteria.PF101 SS  ........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...

bacteria.PF101	GCUGCCAGCCGCUGCAGUGUUCGCGUUUCCCGGCGGUAAG
#=GR bacteria.PF101 SS  >>>...<<<<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<

bacteria.PF101	GGUGAAAUGGUGGGGUAAGAGCCCACCAGCACGACCGCGA
#=GR bacteria.PF101 SS  <.......>>>>>>.......<<<<<<>>>>>>>>>....

bacteria.PF101	GGUCGUGGCUGGGCAAACCCCGCCCGGAGCAAGACCAAAU
#=GR bacteria.PF101 SS  <<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>....

bacteria.PF101	AGGGGGCGCUAUCAGGUUGCCCGCCGAUGCCCCCGGGUCG
#=GR bacteria.PF101 SS  .>>>>>>....>>.>>>.aaaa<<<<<.<<<<<<.....<

bacteria.PF101	GUCGCUUAGAGAAAUGGUCGCCAGCGUCAGGGCUAAAACC
#=GR bacteria.PF101 SS  <<<...................>>>>>>>>>.......<<

bacteria.PF101	UGACGCCACAGAACCCGGCUUA
#=GR bacteria.PF101 SS	<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS1 DE converted from brown dataset ct file

bacteria.PS1		GAGGAAAGUCCGGGCUCCACGAAACAACGGUGCCGGAUA
#=GR bacteria.PS1 SS  .....>>>.>>>>>>>>>...AAAAA.>>>>>>>>>>..

bacteria.PS1	AUGCCCGGCGGGGGUGACCCCAGGGAAAGUGCCACACAGA
#=GR bacteria.PS1 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.PS1	GAGCAGACCGCCCCGGCGCAAGCCAAGGGUAAGGGUGAAA
#=GR bacteria.PS1 SS  .......>>>>>>>>>>....<<<<.<<<<..<<......

bacteria.PS1	GGGUGCGGCAAGAGCGCACCGCGCGGCUGGUAACAGGCGC
#=GR bacteria.PS1 SS  .>>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<

bacteria.PS1	GGCACGGCAAACCCCACCGGGAGCAAGACCGAAUAGGGGC
#=GR bacteria.PS1 SS  <.<..<<<..<<<<<<<<<<<<<...>>>>......>>>>

bacteria.PS1	GGCGUGAGGUUUCGGCCUCAGGGCACGUUUCGGCCCGUCG
#=GR bacteria.PS1 SS  >>>.>>>>>>....<<<<<<>>>>>.aaaaa<<<<<<<<<

bacteria.PS1	CCCGGGUUGGUUGCUUGAGCCGUUCCGCAAGGAUCGGCCU
#=GR bacteria.PS1 SS  <<<.....<<<<......>>>>>>>>....<<<<<<<<..

bacteria.PS1	AGAGGAAUGGUCGCCUAUCCCCGCUUGGGGUGGACAGAAU
#=GR bacteria.PS1 SS  ...............>>>>>>>....<<<<<<<......<

bacteria.PS1	CCGGCUUA
#=GR bacteria.PS1 SS	<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS2 DE converted from brown dataset ct file

bacteria.PS2		GAGGAAAGUGCGGGCUCCACGGAAGCAUGGUGCCGGGUA
#=GR bacteria.PS2 SS  .....>>>.>>>>>>>>>....AAAA.>>>>>>>>>>..

bacteria.PS2	ACGCCCGGCGGGGGCGACCCCAGGGACAGCGCCACAGAGA
#=GR bacteria.PS2 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.PS2	ACAGACCGCCCGCCUACGCGCUAACGCGCUUUAAGCGGGU
#=GR bacteria.PS2 SS  .....>>>>>>>>>>>>>>>....<<<<.<..<<<<<<<<

bacteria.PS2	AAGGGUGAAACGGUGCGGUAAGAGCGCACCGCGUUCUCGG
#=GR bacteria.PS2 SS  ..<<.......>>>>>>.......<<<<<<>>>>>>>>>.

bacteria.PS2	CAACGAGAGCGGCACGGCAAGCCCCGCCAGGAGCAAGACC
#=GR bacteria.PS2 SS  ...<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>

bacteria.PS2	AAAUAGGGACGGCGCUAUGGGCUGCUUCAGGCUCGCCGUC
#=GR bacteria.PS2 SS  ......>>>>>>>.....>>>>>.aaaa<<<<<.<<<<<<

bacteria.PS2	CGGGUAGGUCGCGCGAGGCGUCCGGCGACGGACGUCCCAG
#=GR bacteria.PS2 SS  <.....<<<<......>>>>>>>>....<<<<<<<<....

bacteria.PS2	AGGAAUGGUCAUCCAGUCCGCAAGGAUGGACAGAAUCCGG
#=GR bacteria.PS2 SS  .............>>>>>>....<<<<<<......<<<<<

bacteria.PS2	CUUA
#=GR bacteria.PS2 SS	<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS24 DE converted from brown dataset ct file

bacteria.PS24		GAGGAAAGUCCGGGCUCCACAUAACCACGGUGCCGGGUA
#=GR bacteria.PS24 SS  .....>>>.>>>>>>>>>....AAAA.>>>>>>>>>>..

bacteria.PS24	ACGCCCGGCGGUCGCGCCUCGGGACUGCGCUAUUGCGUGC
#=GR bacteria.PS24 SS  ...<<<<<>>>>>>>>>>>>>>>>>>>>>>..........

bacteria.PS24	GAUAGGGGAAGCCAGACAAGCGCGGCAAGGGACAGUGCCA
#=GR bacteria.PS24 SS  ...<<<<.<<<<<<<<..<<<<<<<<<.<>>...>>>>>.

bacteria.PS24	CAGAGAGCAGACCGCCUAUGGCCGUCGUCCGUUUACGGAU
#=GR bacteria.PS24 SS  ...........>>>>>..>>>>>>>>>>>>>....<<<<<

bacteria.PS24	ACGUGGCCAGGCAAGGGUGAAAGGGUGCGGCAAGAGCGCA
#=GR bacteria.PS24 SS  .<<<<<<<<<<<..<<.......>>>>>>.......<<<<

bacteria.PS24	CCGCGCGAUGGGUAACCGGAGCGGCAUGGCAAACCCCACC
#=GR bacteria.PS24 SS  <<>>>>>>>>>....<<<<<<<<.<..<<<..<<<<<<<<

bacteria.PS24	GGGAGCAAGACCGAAUAGGGACGGCGCGGACUCGCAAGGG
#=GR bacteria.PS24 SS  <<<<<...>>>>......>>>>>>>..>>>>>>....<<<

bacteria.PS24	UUCAGGGCGUGGUUGUCGCCCAGUCGUCCGGGUUGGUUGC
#=GR bacteria.PS24 SS  <<<.>>>>>>.aaaa<<<<<<.<<<<<<<.....<<<<..

bacteria.PS24	UAGAGCCGGUCAGCAAUGGCCGGCGUAGAGGAAUGGUCGC
#=GR bacteria.PS24 SS  ....>>>>>>>>....<<<<<<<<................

bacteria.PS24	CCAUCUGCUGAAAGGCAGUGGACAGAACCCGGCUUA
#=GR bacteria.PS24 SS	.>>>>>>>>....<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS26 DE converted from brown dataset ct file

bacteria.PS26		GAGGAAAGUCCGGGCUCCACGGAAACGACGGUGCCGGAU
#=GR bacteria.PS26 SS  .....>>>.>>>>>>>>>.....AAAA.>>>>>>>>>>.

bacteria.PS26	AAUGUCCGGCGAGGGUGACCUUAGGGAAAGUGCCACAGAG
#=GR bacteria.PS26 SS  ....<<<<<>>>>>....<<<<.<>>...>>>>>......

bacteria.PS26	AGCAAACCGCCGAUGGUCCUUUAAGGGACACAGGCAAGGG
#=GR bacteria.PS26 SS  ......>>>>>..>>>>>>>....<<<<<.<<<<<..<<.

bacteria.PS26	UGAAAGGGUGCGGUAAGAGCGCACCGCGCGACCGGUAACG
#=GR bacteria.PS26 SS  ......>>>>>>.......<<<<<<>>>>>>>>>....<<

bacteria.PS26	GAAGCGGCAAGGCAAACCCCACCCGGAGCAAGACCGAAUA
#=GR bacteria.PS26 SS  <<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>.....

bacteria.PS26	GGGACUGCGCGCCCGCAAGGGCAGGCCUGUUUCGGGCCGG
#=GR bacteria.PS26 SS  .>>>>>>>..>>>>....<<<<.>>>>>.aaaa<<<<<.<

bacteria.PS26	CAGUCCGGGUUGGUCGCUUGAGCGCGCCCGGCAACGGGCC
#=GR bacteria.PS26 SS  <<<<<<.....<<<<......>>>.>>>>>....<<<<<<

bacteria.PS26	GCCUAGAGGAAUGGCUGCCGGUGCGGAUACGGUCGACUUG
#=GR bacteria.PS26 SS  <<.................>>>>>>>..>>>>>>>.....

bacteria.PS26	UGCGAUACCGUCCGCGCCACAGAACCCGGCUAA
#=GR bacteria.PS26 SS	..<<<..<<<<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS27 DE converted from brown dataset ct file

bacteria.PS27		GAGGAAAGUCCGGGCUCCACGGAACGCGGUGCCGGGUAA
#=GR bacteria.PS27 SS  .....>>>.>>>>>>>>>.AAAAAA.>>>>>>>>>>...

bacteria.PS27	CACCCGGCGGGGGCGACCCCAGGGACAGUGCCACAGAGAG
#=GR bacteria.PS27 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.PS27	CAGACCGCCGAUCGGCGUUUCGACGUCGAGGCAAGGGUGA
#=GR bacteria.PS27 SS  ....>>>>>..>>>>>>>....<<<<<<<<<<..<<....

bacteria.PS27	AAGGGUGCGGCAAGAGCGCACCGCGCGACGGGUAACCGAA
#=GR bacteria.PS27 SS  ...>>>>>>.......<<<<<<>>>>>>>>>....<<<<<

bacteria.PS27	GCGGCAUGGCAAACCCCACCGGGAGCAAGACCGAAUAGGG
#=GR bacteria.PS27 SS  <<<.<..<<<..<<<<<<<<<<<<<...>>>>......>>

bacteria.PS27	GCGGCACGAGCCUCGUGCGCAAGCAUGGAGUUCCGGGCAG
#=GR bacteria.PS27 SS  >>>>>..>>>>>>>>>>>....<<<<<<<<<<<.>>>>..

bacteria.PS27	GAACCGGCCCAGCCGCCCGGGUUGGUUGCUUGAGGCGUCC
#=GR bacteria.PS27 SS  aaaaaa<<<<.<<<<<<<.....<<<<......>>>>>>>

bacteria.PS27	GGUGACGGGCGUCCUAGAGGAAUGAUCGUCGCCGGCUUUC
#=GR bacteria.PS27 SS  >....<<<<<<<<.................>>>>>>>...

bacteria.PS27	GGGCCGGGACAGAACCCGGCUUA
#=GR bacteria.PS27 SS	.<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS31 DE converted from brown dataset ct file

bacteria.PS31		GAGGAAAGUCCGGGCUCCACGAAACAAGGGUGGCGGGUA
#=GR bacteria.PS31 SS  .....>>>.>>>>>>>>>..AAAAAA.>>>>>>>>>>..

bacteria.PS31	ACGCCCGCCGGCGUUCCUUCGGGGGCGCAAGGGAAAGUGC
#=GR bacteria.PS31 SS  ...<<<<<>>>>>>>>>....<<<<<<<<.<>>...>>>>

bacteria.PS31	CACAGAGAGUAUACCGCCGAUGAUCCCGGACUUGAUCCGG
#=GR bacteria.PS31 SS  >............>>>>>..>>>>>>>>>>.....<<<<<

bacteria.PS31	GAACAGGCAAGGGUGAAAGGGUGCGGUAAGGGCGCACCGG
#=GR bacteria.PS31 SS  <<<<<<<<..<<.......>>>>>>.......<<<<<<>>

bacteria.PS31	GGGGCUGGCAACAGCCACCGCAUGGCAAACCCCACCCGGA
#=GR bacteria.PS31 SS  >>>>>>>....<<<<<<<<.<..<<<..<<<<<<<<<<<<

bacteria.PS31	GCAAGGCCGAAUAGGGGCCGCGUGCCCAUCAGCAAUGGUG
#=GR bacteria.PS31 SS  <...>>>>......>>>>>>>.>>>>>>>>>....<<<<<

bacteria.PS31	GGUAGGGGAGUUUCGCCCCGAGCGGCCCGGGUUGGCUGCU
#=GR bacteria.PS31 SS  <<<<>>>>.aaaaaa<<<<..<<<<<<<.....<<<<...

bacteria.PS31	AAAGCGCCGGAGCAAUCCGGCGACCAGAUGAAUGGCUGCC
#=GR bacteria.PS31 SS  ...>>>>>>>>....<<<<<<<<.................

bacteria.PS31	ACCGCAGGCCCGUCCCGCAAGGGAUACCGCCUGAGGAGAC
#=GR bacteria.PS31 SS  >>>>>>>>>>>>>>>>....<<<<<<.<<.<<<<<<<<..

bacteria.PS31	AGAACCCGGCUUA
#=GR bacteria.PS31 SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS33 DE converted from brown dataset ct file

bacteria.PS33		GAGGAAAGUCCGGGCACCACAGGGCAGGAUGCGGCUAAC
#=GR bacteria.PS33 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>....

bacteria.PS33	GGCCGGCGCCGUGAGGCGACGGAAAGUGCAACAGAAAGAU
#=GR bacteria.PS33 SS  .<<<<>>>>>....<<<<.<>>...>>>>>..........

bacteria.PS33	ACCGCCGAUGGCCCGCGAGGGCUCAGGCAAGGGUGAAAUG
#=GR bacteria.PS33 SS  .>>>>>..>>>>>>....<<<<.<<<<<..<<.......>

bacteria.PS33	GUACGGUAAGAGCGCACCGCUCCAGCGGCAACGUCUGGAG
#=GR bacteria.PS33 SS  >>>>>.......<<<<<<>>>>>>>>>....<<<.<<<<<

bacteria.PS33	UCGGCAAACCCCAUCCGGUGCAAGACCAAAUAGGGGAGCG
#=GR bacteria.PS33 SS  <.<<<..<<<<<<<<<<<<<...>>>>......>>>>>>.

bacteria.PS33	UUGGCGUGGCCCGCGUCGCUCCCGGGAUGGUUGCUAGAGG
#=GR bacteria.PS33 SS  ..>>>>>.aaaa<<<<<<<<<<<.....<<<<......>>

bacteria.PS33	CUGCGGGCAACCGCGGUCCCAGAGGAAUGGCUGUCACGGC
#=GR bacteria.PS33 SS  >>>>>>....<<<<<<<<..................>>>>

bacteria.PS33	GUGAAAGCGCCGACAGAACCCGGCUUA
#=GR bacteria.PS33 SS	>>....<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS6 DE converted from brown dataset ct file

bacteria.PS6		GAGGAAAGUCCGGGCUCCACGGAACGCGGUGCCGGGUAA
#=GR bacteria.PS6 SS  .....>>>.>>>>>>>>>..AAAAA.>>>>>>>>>>...

bacteria.PS6	CGCCCGGCGGGGGCGACCCCAGGGAAAGUGCCACAGAGAG
#=GR bacteria.PS6 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.PS6	CAGACCGCCGAUGGCUCCGAAAGGACCACAGGCAAGGGUG
#=GR bacteria.PS6 SS  ....>>>>>..>>>>>>>....<<<<.<<<<<<..<<...

bacteria.PS6	AAAGGGUGCGGCAAGAGCGCACCGCGCAGCGGGCAACCGA
#=GR bacteria.PS6 SS  ....>>>>>>.......<<<<<<>>>>>>>>>....<<<<

bacteria.PS6	AGCGGCACGGCAAACCCCACCGGGAGCAAGACCGAAUAGG
#=GR bacteria.PS6 SS  <<<<.<..<<<..<<<<<<<<<<<<<...>>>>......>

bacteria.PS6	CACGCGAUGGGCUUAGGCCCGGGGCAGGAACCGGCCCUUU
#=GR bacteria.PS6 SS  >>>>>>>.>>>>....<<<<>>>>>>.aaaaa<<<<<<..

bacteria.PS6	UCGCGUGCGGGUUGGUUGGUUGAGGCCGUCGGCAACGCCG
#=GR bacteria.PS6 SS  <<<<<<<<.....<<<<......>>>>>>>>....<<<<<

bacteria.PS6	GUGGUAGAGGAAUGAUCGUCACUGUCCUUCGGGGCAGAAC
#=GR bacteria.PS6 SS  <<<.................>>>>>>>....<<<<<<<..

bacteria.PS6	AGAACCCGGCUUA
#=GR bacteria.PS6 SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.PS8 DE converted from brown dataset ct file

bacteria.PS8		GAGGAAAGUCCGGGCAACACAGAGCAGGAUACUUCUUAA
#=GR bacteria.PS8 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.PS8	CGAGAAGCAGUUCGCGAGGGCUGAGUAGUGUAACAGAAAA
#=GR bacteria.PS8 SS  ..<<<<<>>>>>>....<<<<<<>>..>>>>>........

bacteria.PS8	UAACCGCCACACUUCGGUUUGGUAAGGGUGAAAAGGUGGG
#=GR bacteria.PS8 SS  ...>>>>>>>>>....<<<<<<<..<<.......>>>>>>

bacteria.PS8	GUAAGAGCCUACCGUAGCGGCCGUAAUUCCGCUAGCCGUA
#=GR bacteria.PS8 SS  .......<<<<<<>>>>>>>>>....<<<<<<<<.<..<<

bacteria.PS8	CGCCUUAUGGGUUGUAAGAUCAUGUACACCGACGCAUGUA
#=GR bacteria.PS8 SS  <<<<<<<<<<<<<<...>>>>.......>>>>>>....>>

bacteria.PS8	GAGUGACUCGCUCGAUGUCGGGGGGUAGAUCGCUAGAGUU
#=GR bacteria.PS8 SS  >>>>.aaaa<<<<<<<<<<<<......<<<<......>>>

bacteria.PS8	GCGUAGUGAUACGUAAUCGAGAUAAAUGGCAGACGUUGUG
#=GR bacteria.PS8 SS  >>>>>....<<<<<<<<.................>>>>>>

bacteria.PS8	CUUGCACAAUACAGAAUCCGGCUUA
#=GR bacteria.PS8 SS	....<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Prochlorococcus-NATL1 DE converted from brown dataset ct file

bacteria.Prochlorococcus-NATL1		UUGAGGAAAGUCCGGGCUCCUAUUUGGCCAGGCUUGCUG
#=GR bacteria.Prochlorococcus-NATL1 SS  .......>>>.>>>>>>>>>>...AAAAA.>>>.>>>>>

bacteria.Prochlorococcus-NATL1	GGUAAUUCCCAGUGCGGGUGACCGUGAGGAUAGUGCCACA
#=GR bacteria.Prochlorococcus-NATL1 SS  >>.....<<<<<>>>>>....<<<<.<>>...>>>>>...

bacteria.Prochlorococcus-NATL1	GAAACACACCGCCUAAUGCUUAAUGGGGAAAUCCCAACAA
#=GR bacteria.Prochlorococcus-NATL1 SS  ........>>>>>..>>>>>>>>>>>>>...<<<<<<<<<

bacteria.Prochlorococcus-NATL1	GCGCGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGC
#=GR bacteria.Prochlorococcus-NATL1 SS  <<<<<<<..<<.......>>>>>>.......<<<<<<>>>

bacteria.Prochlorococcus-NATL1	AGCAUCGAGAGGUGCUGGCUAGGUAAACCCCGGCCAGGAG
#=GR bacteria.Prochlorococcus-NATL1 SS  >>>>>>....<<<<<<<.<<.<<<..<<<<<<<<<<<<<<

bacteria.Prochlorococcus-NATL1	CAAGGCGAGGGGCACUGGAUGGCCAUAGACCUUGUCCCUG
#=GR bacteria.Prochlorococcus-NATL1 SS  ...>>>..>>>>>>..>>>.aaaaa...<<<.<<<<<<..

bacteria.Prochlorococcus-NATL1	UAGAGAGCCGCUUGAGGCUAGCGGUAACGUUAGUCCCAGA
#=GR bacteria.Prochlorococcus-NATL1 SS  ......<<<......>>>>>>>>....<<<<<<<<.....

bacteria.Prochlorococcus-NATL1	UAGAUGAUUGCCCAUUCCCUUUCUAAAGAAAGAGGAAAGA
#=GR bacteria.Prochlorococcus-NATL1 SS  ............>>>>>>>>>.>.....<<<<<<.<<<<.

bacteria.Prochlorococcus-NATL1	ACAGAACCCGGCUU
#=GR bacteria.Prochlorococcus-NATL1 SS	......<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.Prochlorococcus-TAK9803-2 DE converted from brown dataset ct file

bacteria.Prochlorococcus-TAK9803-2		CUGAGGAAAGUCCGGGCUCCCAUAUGGUCAGGCUUGCUG
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  .......>>>.>>>>>>>>>>...AAAAA.>>>.>>>>>

bacteria.Prochlorococcus-TAK9803-2	GGUAAUUCCCAGUGCGGGCAACCGUGAGGAUAGUGCCACA
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  >>.....<<<<<>>>>>....<<<<.<>>...>>>>>...

bacteria.Prochlorococcus-TAK9803-2	GAAACAUACCGCCUAAUACUUUAUGUAUGGCAAGGGUGCA
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  ........>>>>>..>>>>.....<<<<<<<..<<.....

bacteria.Prochlorococcus-TAK9803-2	AGGGUGUGGUAAGAGCGCACCAGCAACAUUGAGAAGUGUU
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  ..>>>>>>.......<<<<<<>>>>>>>>>....<<<<<<

bacteria.Prochlorococcus-TAK9803-2	GGCUAGGUAAACCCCGGCUGGGAGCAAGGCUUAGUAGAUU
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  <.<<.<<<..<<<<<<<<<<<<<<...>>>..>>>>>>.>

bacteria.Prochlorococcus-TAK9803-2	UAUGACCAUUGCACAAUCUGCUUUUAAGCGCCGCUUGAGA
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  >>.aaaaa...<<<..<<<<<<.......<<<......>>

bacteria.Prochlorococcus-TAK9803-2	CUGUGAAGUAAUUCCAGUUCUAGAUAGAUGAUUGCCCAUC
#=GR bacteria.Prochlorococcus-TAK9803-2 SS  >>>.>>>....<<<<<<<<.................>>>>

bacteria.Prochlorococcus-TAK9803-2	UUAUUAAAGAUGAACAGAACCCGGCUUAC
#=GR bacteria.Prochlorococcus-TAK9803-2 SS	>>....<<<<<<.......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.Pseudoanabaena-PCC6903 DE converted from brown dataset ct file

bacteria.Pseudoanabaena-PCC6903		GAAAGAGUAAGCGAGCAGUUGCGAAAUUAGUCUUAAAGU
#=GR bacteria.Pseudoanabaena-PCC6903 SS  ..>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>

bacteria.Pseudoanabaena-PCC6903	AUAAUGAAAAUUUGCUUUAAGUACGGAUUUUGAGGAAAGU
#=GR bacteria.Pseudoanabaena-PCC6903 SS  >.>>>....<<<<<<<<<<<<.<<<<<<<<<<....BBB.

bacteria.Pseudoanabaena-PCC6903	CCGGGCUUCCAAGAAGAUCAGGCUGCUGGAUAACGCCCAG
#=GR bacteria.Pseudoanabaena-PCC6903 SS  BBBBBAAAAA..>>>>>>>.>>>>>>>>>>.....<<<<<

bacteria.Pseudoanabaena-PCC6903	UGCGAGCAAUCGUGAGGAUAGUGCCACAGAAAGAUACCGC
#=GR bacteria.Pseudoanabaena-PCC6903 SS  >>>>>....<<<<.<>>...>>>>>...........>>>>

bacteria.Pseudoanabaena-PCC6903	CUAACUUCGGUUAGGUAAGGGUGCAAAGGUGUGUUAAGAG
#=GR bacteria.Pseudoanabaena-PCC6903 SS  >>>>>....<<<<<<<..<<.......>>>>>>.......

bacteria.Pseudoanabaena-PCC6903	CGCACCAGCAGGGUCGUGAGGCUCUGGCUCGGUAAACCCC
#=GR bacteria.Pseudoanabaena-PCC6903 SS  <<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<

bacteria.Pseudoanabaena-PCC6903	AGUCGGAAGCAAGGCGAGAGGAAAUAAGCGUUGCGAUCUU
#=GR bacteria.Pseudoanabaena-PCC6903 SS  <<<<aaaaa...>>>....>>>>>>>>..>>>>.<<<<<<

bacteria.Pseudoanabaena-PCC6903	CAAUAGACCUUAUUUCCGUGACUUAACUGCGUUUAGUGCG
#=GR bacteria.Pseudoanabaena-PCC6903 SS  <...<<<<.<<<<<<<<...>>>>>>>>>>>>>>..>>>>

bacteria.Pseudoanabaena-PCC6903	CGAAAGCGUGGCAAGCGUAGUUAAGUGUGUGCCGCAAGAG
#=GR bacteria.Pseudoanabaena-PCC6903 SS  >....<<<<<..<<<<<<<<<<<<<<....<<<......>

bacteria.Pseudoanabaena-PCC6903	GUAUUUGGUAACAAAUAUCCCAGAUAGAUAACCGCUAGGG
#=GR bacteria.Pseudoanabaena-PCC6903 SS  >>>>>>>....<<<<<<<<..........<<<<<<<>>>>

bacteria.Pseudoanabaena-PCC6903	CAGUUGUUAUCAACUCCCAAAACAGAACCCGGCUUAUGUC
#=GR bacteria.Pseudoanabaena-PCC6903 SS  .>>>>>....<<<<<<<<<........bbbbbbbb.<<.<

bacteria.Pseudoanabaena-PCC6903	UUACUCUUUCU
#=GR bacteria.Pseudoanabaena-PCC6903 SS	<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS bacteria.R.capsulatus DE converted from brown dataset ct file

bacteria.R.capsulatus		GCGGAAGACCGGAUGACCGCGGCGGCCCAUAGCUCCGUU
#=GR bacteria.R.capsulatus SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>..

bacteria.R.capsulatus	UUUCGGAUAGCUGGGCCUCCGAGGAAAGUCCGGACUCCAU
#=GR bacteria.R.capsulatus SS  ...<<<<<<<<<<<<<<<<<<....BBB.BBBBB>>>>..

bacteria.R.capsulatus	GAAGCAACGGUGCCGGGUAACGCCCGGCGGGGGCAACCCC
#=GR bacteria.R.capsulatus SS  AAAAAA.>>>>>>>>>>.....<<<<<>>>>>....<<<<

bacteria.R.capsulatus	AGGGAAAGCGCCACAGAGAACAGACCGCCCCGCUUGCGGG
#=GR bacteria.R.capsulatus SS  .<>>...>>>>>............>>>>>>>>....<<<<

bacteria.R.capsulatus	GUGAGGGUGAAACGGUGGGGUAAGAGCCCACCGCGGGACU
#=GR bacteria.R.capsulatus SS  <<..<<.......>>>>>>.......<<<<<<>>>>>>>>

bacteria.R.capsulatus	GGCAACAGGACCGGCACGGCAAGCCCCACCGGGAGCAACG
#=GR bacteria.R.capsulatus SS  >....<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>>

bacteria.R.capsulatus	CCGAAUAGGGAUGCCGCGCCGCAACCGGAAACGGGGGACG
#=GR bacteria.R.capsulatus SS  >>......>>>>>>>..>>>>>>>>>>....<<<<<.<<<

bacteria.R.capsulatus	GCAGGGGAGCUUCGCCCCGAGGUGUCCGGGUUGGCGGCUU
#=GR bacteria.R.capsulatus SS  <<.>>>>.aaaaaa<<<<..<<<<<<<.....<<<<....

bacteria.R.capsulatus	GAGGCUGCGGGUGACCGCAGACCCAGAGGAAUGGUCAUCC
#=GR bacteria.R.capsulatus SS  ..>>>>>>>>....<<<<<<<<..........<<<<<<<>

bacteria.R.capsulatus	AGGGGGCAACCCCGGACAAAAUCCGGCUUACAGGUCUUCC
#=GR bacteria.R.capsulatus SS  >>>>>....<<<<<<......bbbbbbbb.<.<<<<<<<<

bacteria.R.capsulatus	GCGCGC
#=GR bacteria.R.capsulatus SS	<<....

//
# STOCKHOLM 1.0

#=GS bacteria.R.palustris DE converted from brown dataset ct file

bacteria.R.palustris		UCAGUCGGCCGGACGGCCGCUCCGGCAAGUGCCGAAAGG
#=GR bacteria.R.palustris SS  >>>>>>>>>>>>>>>>>>.>>>>>>>..>.>>>....<<

bacteria.R.palustris	CCGCCGGGGAGGAAAGUCCGGGCUCCAUCGACAUACGGUG
#=GR bacteria.R.palustris SS  <<<<<<<<<....BBB.BBBBB>>>>.AAAAAAA.>>>>>

bacteria.R.palustris	CCGGAUAACGUCCGGCGGGGGCGACCCCAGGGAAAGUGCC
#=GR bacteria.R.palustris SS  >>>>>.....<<<<<>>>>>....<<<<.<>>...>>>>>

bacteria.R.palustris	ACAGAGAACGAACCGCCCGCCUUCGCAGCUUCGCUGCUUC
#=GR bacteria.R.palustris SS  ............>>>>>>>>>>>>>>>>>...<<<<<>>>

bacteria.R.palustris	GGCGCGGCAAGCCCUCGGGCUCGCUGCGCCAUAACCCGCA
#=GR bacteria.R.palustris SS  >>>>>>>>>>>>>....<<<<<<<<<<<<<<<<>>>>...

bacteria.R.palustris	AGGGUGAAGGCGAGUAAGGGUGAAAAGGUGCGGUAAGAGC
#=GR bacteria.R.palustris SS  .<<<<<<<<<<<<<<..<<.......>>>>>>.......<

bacteria.R.palustris	GCACCGCGUCGCCGGCAACGGGGACGGCAUGGUAAACCCC
#=GR bacteria.R.palustris SS  <<<<<>>>>>>>>>....<<<<<<<<.<..<<<..<<<<<

bacteria.R.palustris	ACCGGGAGCAAAACCGAAUAGGGACGGCAUCGCGGAUAGU
#=GR bacteria.R.palustris SS  <<<<<<<<...>>>>......>>>>>>>...>>>>>..>>

bacteria.R.palustris	UCGCUGCUCGCAGCGAUAACUCCGCAGGGCGAUGUCAGGC
#=GR bacteria.R.palustris SS  >>>>>>....<<<<<..<<<<<<<<.>>>>.aaaaaaa<<

bacteria.R.palustris	UCGCCGUCCGGGUAGGUUGCUCGAGGCGCUGUGCAAACAG
#=GR bacteria.R.palustris SS  <<<<<<<<<.....<<<<......>>>>>>>>....<<<<

bacteria.R.palustris	UGUCCCAGAGGAAUGGCCGUCGCGCAUCGCCUCCGCAAGG
#=GR bacteria.R.palustris SS  <<<<..........<<<<<<<>>>>>>>>>>>>>....<<

bacteria.R.palustris	AAGCGGUGCCCUCACAGAACCCGGCUUACAGGCCGGCUGA
#=GR bacteria.R.palustris SS	<<<<<<<<<..<<......bbbbbbbb.<.<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.R.prowazekii DE converted from brown dataset ct file

bacteria.R.prowazekii		CUAAAUGGUCGUGCAGUUGCGUGAUGAUAAUCACGAGGA
#=GR bacteria.R.prowazekii SS  >>>>>>>>>>>>>>>>>>.>>>>>>....<<<<<<....

bacteria.R.prowazekii	AAGUCCGGACUCUAUAGAGGUAUGGUGCCGGUUAACAUCC
#=GR bacteria.R.prowazekii SS  BBB.BBBBB>>>>.AAAAAAA.>>>>>>>>>>.....<<<

bacteria.R.prowazekii	GGCAGAGUAUUAUUACUUUAGGGCUAGUACCACAGAAAAU
#=GR bacteria.R.prowazekii SS  <<>>>>>>>....<<<<<<.<>>...>>>>>.........

bacteria.R.prowazekii	AUACCGCCGAGUAUUUCGGUAAGGGUGAAAAGGUGUGGUA
#=GR bacteria.R.prowazekii SS  ...>>>>>>>>...<<<<<<..<<.......>>>>>>...

bacteria.R.prowazekii	AGAGCACACCGGUAAGUUGGCAACAAGUUACGCAUGGUUA
#=GR bacteria.R.prowazekii SS  ....<<<<<<>>>>>>>>>....<<<<<<<<.<..<<<..

bacteria.R.prowazekii	ACCCCACCAAGAGCAAGAUCAAAUAGGCAUUACAGAAUUU
#=GR bacteria.R.prowazekii SS  <<<<<<<<<<<<<...>>>>......>>>>>>>>>>>>>>

bacteria.R.prowazekii	AAAUAUUUAUUUAAGUUCCUGGGUUACCUCUAAUCGGAUU
#=GR bacteria.R.prowazekii SS  >>>>....<<<<<<<<<<>>>>>.aaaaaaa.<<<<<..<

bacteria.R.prowazekii	GUAAUGCGGGUAGAUCGCUUGAGGUAAACGGUAACGUUUA
#=GR bacteria.R.prowazekii SS  <<<<<<<.....<<<<......>>>>>>>>....<<<<<<

bacteria.R.prowazekii	UCCUAGAUAAAUAACUGCAAUGAAUUAAUAUUCAUACAGA
#=GR bacteria.R.prowazekii SS  <<..........<<<<<<<>>>>>>....<<<<<<.....

bacteria.R.prowazekii	AUCCGGCUUAUAGACCAGAUGAGCAG
#=GR bacteria.R.prowazekii SS	.bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.R.rubrum DE converted from brown dataset ct file

bacteria.R.rubrum		CCAGUCGGCCGGAUGGCCGCUCUCCGUCAUCGUCCCCGG
#=GR bacteria.R.rubrum SS  >>>>>>>>>>>>>>>>>>.>>>>>>>..>>>>>>>>>>>

bacteria.R.rubrum	GCCACCCCCGAUGGACCGUCGGGGGGAGGAAAGUCCGGGC
#=GR bacteria.R.rubrum SS  >.....<<<<<.<<<<<<<<<<<<<<....BBB.BBBBB>

bacteria.R.rubrum	UCCACGGGAACACGGUGCCGGGUAACGCCCGGCGGGGGCG
#=GR bacteria.R.rubrum SS  >>>....AAAA.>>>>>>>>>>.....<<<<<>>>>>...

bacteria.R.rubrum	ACCCUAGGGAAAGUGCCACAGAGAGCAAACCGCCGGCCUA
#=GR bacteria.R.rubrum SS  .<<<<.<>>...>>>>>............>>>>>>>>>..

bacteria.R.rubrum	UACGGCCGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACC
#=GR bacteria.R.rubrum SS  ...<<<<<<<..<<.......>>>>>>.......<<<<<<

bacteria.R.rubrum	GCCUGCCCGGCAACGGGGAGGGCAUGGUAAACCCCACCGG
#=GR bacteria.R.rubrum SS  >>>>>>>>>....<<<<<<<<.<..<<<..<<<<<<<<<<

bacteria.R.rubrum	GAGCAAGAUCGAAUAGGGACGGCACGCCCCGGUUUUCCGG
#=GR bacteria.R.rubrum SS  <<<...>>>>......>>>>>>>..>>>>>>>....<<<<

bacteria.R.rubrum	GGCAAGCGGCGUUUCCGCGCCGCCGUCCGGGUAGUAUCGC
#=GR bacteria.R.rubrum SS  <<<..>>>>.aaaa<<<<...<<<<<<<.....<.<<<..

bacteria.R.rubrum	GCGAGGCGUCCGGUAACGGGCGUCCCAGAUGAAUGGCCAU
#=GR bacteria.R.rubrum SS  ....>>>>>>>>....<<<<<<<<..........<<<<<<

bacteria.R.rubrum	CCCCGUCGUCGCGUCCCUUGCGGGAUACGGCCGGCGUGGA
#=GR bacteria.R.rubrum SS  <>>>>>>>>>>>>>>>>....<<<<<<<<<.<<<<<.<<.

bacteria.R.rubrum	CAGAACCCGGCUUACAGGCCGUCUGGCGGU
#=GR bacteria.R.rubrum SS	.....bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.Rr327 DE converted from brown dataset ct file

bacteria.Rr327		GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGCCAGCUAA
#=GR bacteria.Rr327 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.Rr327	CGGCUGGGCGGGGUAACCCGACGGAAUAGUGCAACAGAGA
#=GR bacteria.Rr327 SS  ..<<<<<>>>>>....<<<<.<>>....>>>>>.......

bacteria.Rr327	GCAGACCGCCGCUUCGCUGCUCCGGCAGCGGGCGGUAAGG
#=GR bacteria.Rr327 SS  .....>>>>>>>>.>>>>>.....<<<<<.<<<<<<..<<

bacteria.Rr327	GUGAAACGGUGGGGUAAGAGCCCACCAGUGCCCCUGGAGA
#=GR bacteria.Rr327 SS  .......>>>>>>.......<<<<<<>>>>>>>>>>....

bacteria.Rr327	CAGGGGGAGCUAGGUAAACCCCACCCGGUGCAAGGCCUAC
#=GR bacteria.Rr327 SS  <<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>..>

bacteria.Rr327	GUGAGGGCAUGCCCUCGCGCACCCCAGGGAGAGCUUGCCC
#=GR bacteria.Rr327 SS  >>>>>>>....<<<<<<<<...>>>>>>..>>>>>.aaaa

bacteria.Rr327	GGCUCGCUUACCUGGAGGGAUUGGCCGCUCGAGGUCGCUG
#=GR bacteria.Rr327 SS  <<<<<.....<<<<<<......<<<<......>>>>>>>>

bacteria.Rr327	GCGACAGCGAUCCCAGAUAGAUGACCGUGGAAACAGAAUC
#=GR bacteria.Rr327 SS  ....<<<<<<<<..........................<<

bacteria.Rr327	CGGCUUA
#=GR bacteria.Rr327 SS	<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Rr368 DE converted from brown dataset ct file

bacteria.Rr368		GAGGAAAGUCCGGGCACCGCAGGGCAGGAUGCCAGCUAA
#=GR bacteria.Rr368 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.Rr368	CGGCUGGUCGGCGAGUCGAGCACCCGCACGCGCGCCUUGG
#=GR bacteria.Rr368 SS  ..<<<<<>>>>>...>>>.....>>>>.>>>>>>>....<

bacteria.Rr368	CGUGUAGGAAGCGGCGAAGCCGAAGGAAAGUGCCACAGAA
#=GR bacteria.Rr368 SS  <<<<<<....<<<<<<<.<<<<.<>>...>>>>>......

bacteria.Rr368	ACCAGACCGCCAUUCCCGGACAGCCCCGGCGCGGGCGGGA
#=GR bacteria.Rr368 SS  ......>>>>>>>>>>>>......>>>>...<<<<<<<<<

bacteria.Rr368	GUGGUCAGGGUGAAACGGUGCGGUAAGAGCGCACCAGGCU
#=GR bacteria.Rr368 SS  <<<<<..<<.......>>>>>>.......<<<<<<>>>>>

bacteria.Rr368	CCCCGGAGACGGCGAGCGCUGGUAAACCCCAUCCGGUGCA
#=GR bacteria.Rr368 SS  >>>>>....<<<<<<<<.<<<<<..<<<<<<<<<<<<<..

bacteria.Rr368	AGACCCGACAGUGCGGUAUGGAACGGCCCGUUCCUUUGAC
#=GR bacteria.Rr368 SS  .>>>>.......>>>>>..>>>>>.aaaa<<<<<....<<

bacteria.Rr368	CGCCAGGAUGGUCGCUAGAGGCGCGCGGCGACGUGCGUCC
#=GR bacteria.Rr368 SS  <<<......<<<<......>>>>>>>>....<<<<<<<<.

bacteria.Rr368	CAGAGAGAUGACCGUGACCCCACGCGAGUGGGCCACAGAA
#=GR bacteria.Rr368 SS  ................>>>>>>>....<<<<<<<.....<

bacteria.Rr368	UCCGGCUUA
#=GR bacteria.Rr368 SS	<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.S.azurea-K161T DE converted from brown dataset ct file

bacteria.S.azurea-K161T		GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAA
#=GR bacteria.S.azurea-K161T SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.S.azurea-K161T	CAGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAGAA
#=GR bacteria.S.azurea-K161T SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.S.azurea-K161T	CAGACCGCCCGGCCGUCUCGGCCGGGUAAGGGUGAAACGG
#=GR bacteria.S.azurea-K161T SS  ....>>>>>>>>>>.....<<<<<<<<..<<.......>>

bacteria.S.azurea-K161T	UGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGG
#=GR bacteria.S.azurea-K161T SS  >>>>.......<<<<<<>>>>>>>>>>....<<<<<<<<.

bacteria.S.azurea-K161T	CUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCG
#=GR bacteria.S.azurea-K161T SS  <<.<<<..<<<<<<<<<<<<<...>>>>....>>>>>>>.

bacteria.S.azurea-K161T	CGAGGCUCCUGCGCAGGCGUUCGAGGGCGGCCCGUCCGAU
#=GR bacteria.S.azurea-K161T SS  ...<<<<<<<..>>>>>>>...>>>>>>.aaaa<<<<<<<

bacteria.S.azurea-K161T	GCCUGCGGGUAGGCCGCUGGAGCCUGUCGGCGACGGCAGG
#=GR bacteria.S.azurea-K161T SS  <<<<<<.....<<<<......>>>>>>>>....<<<<<<<

bacteria.S.azurea-K161T	CCAAGAUGGAUGGUCGCCCAGCGUCCGCCGCGAGGCGGGC
#=GR bacteria.S.azurea-K161T SS  <.................>>>>>>>>>>>....<<<<<<<

bacteria.S.azurea-K161T	GUGGACAGAACCCGGCGUAG
#=GR bacteria.S.azurea-K161T SS	<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.S.bikiniensis DE converted from brown dataset ct file

bacteria.S.bikiniensis		CGAGCCGGGCGGGCGGCCGCGUGGGGGUCUUCGGACCUC
#=GR bacteria.S.bikiniensis SS  >>>>>>>>>>>>>>>>>>.>>>>>>>>>>....<<<<<<

bacteria.S.bikiniensis	CCCGAGGAACGUCCGGGCUCCACAGAGCAGGGUGGUGGCU
#=GR bacteria.S.bikiniensis SS  <<<<....BBB.BBBBB>>>>...AAAA.>>>>>>>>>>.

bacteria.S.bikiniensis	AACGGCCACCCGGGGUGACCCGCGGGACAGUGCCACAGAA
#=GR bacteria.S.bikiniensis SS  ....<<<<<>>>>>....<<<<.<>>...>>>>>......

bacteria.S.bikiniensis	AACAGACCGCCGGGGACCUCGGUCCUCGGUAAGGGUGAAA
#=GR bacteria.S.bikiniensis SS  ......>>>>>>>>>>>....<<<<<<<<<..<<......

bacteria.S.bikiniensis	CGGUGGUGUAAGAGACCACCAGCGCCUGAGGCGACUCAGG
#=GR bacteria.S.bikiniensis SS  .>>>>>>.......<<<<<<>>>>>>>>>>....<<<<<<

bacteria.S.bikiniensis	CGGCUAGGUAAACCCCACUCGGAGCAAGGUCAAGAGGGGA
#=GR bacteria.S.bikiniensis SS  <<.<<.<<<..<<<<<<<<<<<<<...>>>>....>>>>>

bacteria.S.bikiniensis	CACCCCGGUGUCCCUGCGCGGAUGUUCGAGGGCUGCUCGC
#=GR bacteria.S.bikiniensis SS  >>>....<<<<<<<<..>>>>>>....>>>>>>.aaaa<<

bacteria.S.bikiniensis	CCGAGUCCGCGGGUAGACCGCACGAGGCCGGCGGCAACGC
#=GR bacteria.S.bikiniensis SS  <<<<<<<<<<.....<<<<......>>>>>>>>....<<<

bacteria.S.bikiniensis	CGGCCCUAGAUGGAUGGCCGUCGCCCCGACGACCGCGAGG
#=GR bacteria.S.bikiniensis SS  <<<<<..........<<<<<<<.>>>>>.>>>>>....<<

bacteria.S.bikiniensis	UCCCGGGGACAGAACCCGGCGUACAGCCCGACUCGUCUG
#=GR bacteria.S.bikiniensis SS	<<<<<<<<......bbbbbbbb.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.S.polymorpha DE converted from brown dataset ct file

bacteria.S.polymorpha		CACGGAAACCACGGUGCCGGAUAACGUCCGGCGGCUUCG
#=GR bacteria.S.polymorpha SS  A.>>>>>.>>.>>>>>>>>>>.....<<<<<>>>>>>>>

bacteria.S.polymorpha	GGAAACCGGAGUCAGGGAAAGUGCCACAGAGAGCAGACCG
#=GR bacteria.S.polymorpha SS  >....<<<<<<<<.<>>...>>>>>............>>>

bacteria.S.polymorpha	CCAAAGGCUUCGGCCCGGCGAAAGGUGAAAGGGUGCGGUA
#=GR bacteria.S.polymorpha SS  >>..............<<<<...<.......>>>>>>...

bacteria.S.polymorpha	AGAGCGCACCGCGCGGACGGCAACGGACGCGGCACGGCAA
#=GR bacteria.S.polymorpha SS  ....<<<<<<>>>>>>>>>....<<<<<<<<.<..<<<..

bacteria.S.polymorpha	ACCCCACCGGGAGCAAGGUCGAAUAGGGAUGGCAAGAGGU
#=GR bacteria.S.polymorpha SS  <<<<<<<<<a......>>>>......>>>>>>...AAA..

bacteria.S.polymorpha	GACUCAGGGCUGGUUUCCGGCCCCGCCGUCCGGGUUGACU
#=GR bacteria.S.polymorpha SS  ..aaa.>>>>.<<.<<<<<<<<<..<<<<<<.....<<<<

bacteria.S.polymorpha	GCUUGAGCGUCCGGGCAACCGGCCGCCUAGAGGAAUGAUC
#=GR bacteria.S.polymorpha SS  ......>>>>>>>>....<<<<<<<<..............

bacteria.S.polymorpha	GCCCAUCCCCUGUCAAAAGGGGUGG
#=GR bacteria.S.polymorpha SS	...>>>>>..>........<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A01 DE converted from brown dataset ct file

bacteria.SM-A01		GAGGAAAGUCCGGGCUCCGCAGGGCAGGGUGCCGGAUAA
#=GR bacteria.SM-A01 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A01	CGUCCGGCGGGAGCAAUCCUAGGGACAGUGCCACAGAAAU
#=GR bacteria.SM-A01 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A01	GAGGACCGCCGAUGGUGUCGGCAAUGCCGGCACACAGGCA
#=GR bacteria.SM-A01 SS  .....>>>>>..>>>>>>>>>>...<<<<<<<<.<<<<<.

bacteria.SM-A01	AGGAUGCAACGGUGCGGUAAGAGCGCACCAGCAACCCGGG
#=GR bacteria.SM-A01 SS  .<<.......>>>>>>.......<<<<<<>>>>>>>>>..

bacteria.SM-A01	AACGGGUUGGCUAGGUAAACCCCACCUGGAGCAAGACCGG
#=GR bacteria.SM-A01 SS  ..<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>..

bacteria.SM-A01	AUAGGAGUGCGCACGUGGUGGCCCGCCACGCACUCGGGUA
#=GR bacteria.SM-A01 SS  ....>>>>>>....>>>>>.aaaa<<<<<<<<<<<.....

bacteria.SM-A01	GGUUGCUUGAGCCAAUUGGCAACAGUUGGCCUAGAUAGAU
#=GR bacteria.SM-A01 SS  <<<<......>>>>>>>>....<<<<<<<<..........

bacteria.SM-A01	GAUUGCCACUCCAUUCGUGCGAGGCAGACGGGUGAAAUGA
#=GR bacteria.SM-A01 SS  .......>>>>>...>>>>>>>>>>>>>>>>>>>>>>>..

bacteria.SM-A01	CCGAGAGCGAGUUGCUUAUCGGAUUUUGCGGACCUGCCGC
#=GR bacteria.SM-A01 SS  >>>>>>>>.....<<<<.<<<<<<<<<<<<<<<<<<<<<.

bacteria.SM-A01	UUGGAGCACAGGAGCACAGAAUCCGGCUUA
#=GR bacteria.SM-A01 SS	....<<<<<<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A04 DE converted from brown dataset ct file

bacteria.SM-A04		GAGGAAAGUCCGGGCUCCACAGGGCAGGAUGGUCCUUAA
#=GR bacteria.SM-A04 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A04	CGGGGACCGGGGGCGACCCCAGGGAAAGUGCCACAGAGAG
#=GR bacteria.SM-A04 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A04	UAGACCGCCCGCCAAGGCCUGGCCGUGGCGUGGUAAGGGU
#=GR bacteria.SM-A04 SS  ....>>>>>>>>>>>>>>...<<<<.<<<<<<<<..<<..

bacteria.SM-A04	GAAAGGGUGAGGCAAGAGCUCACCAGUGCCGGCGGUGACG
#=GR bacteria.SM-A04 SS  .....>>>>>>.......<<<<<<>>>>>>>>>>....<<

bacteria.SM-A04	UCGGCAGCUCGGUAAACCCCAUCCGGAGCAAGGCCAAAUA
#=GR bacteria.SM-A04 SS  <<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>.....

bacteria.SM-A04	GGGGAGUGAUUGAGGACGGCCCGUUCGAGACUCCCGGGUC
#=GR bacteria.SM-A04 SS  .>>>>>>...>>>>>>>.aaaa<<<<<<<<<<<<<.....

bacteria.SM-A04	AGGCUGCUUGAGGCCAUCGGCAACGGUGGUCCUAGAGGAA
#=GR bacteria.SM-A04 SS  .<<<<......>>>>>>>>....<<<<<<<<.........

bacteria.SM-A04	UGAUCGUCGCUUCGCAGCGGGCAACUGCUGCGGGGUACAG
#=GR bacteria.SM-A04 SS  ........>>>>>>>>>>>>....<<<<<<<<<<<<....

bacteria.SM-A04	AACCCGGCUUA
#=GR bacteria.SM-A04 SS	..<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A06 DE converted from brown dataset ct file

bacteria.SM-A06		GAGGAAAGUCCGGGCUCCUCAGGACAGGAUGGUCGAUAA
#=GR bacteria.SM-A06 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A06	CGUCGACCGGCCGCGAGGUCAGGGAAAGUGCAACAGAAAG
#=GR bacteria.SM-A06 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A06	CAGACCGCCGAACGGUCCUUCGGGACGCGUGGCAAGGGUG
#=GR bacteria.SM-A06 SS  ....>>>>>..>>>>>>>.....<<<<<<<<<<..<<...

bacteria.SM-A06	AAACGGUGCGGCAAGAGCGCACCAGCGGUCGAGGUGACUC
#=GR bacteria.SM-A06 SS  ....>>>>>>.......<<<<<<>>>>>>>>>>....<<<

bacteria.SM-A06	GAUCGGCUUUGUAAACCCCAUCCGGAGCUAGACCAAACAG
#=GR bacteria.SM-A06 SS  <<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>.....>

bacteria.SM-A06	GUUGCAGUCGUCGAGUUCGCUCGACGCGCGAAGUCGUCCG
#=GR bacteria.SM-A06 SS  >>>>.........>>.........<<.>>>>>>>.aaaa<

bacteria.SM-A06	CUUCGUUAUCGACAUCCGGGUAGGUCGCGAUUGAGGCGAC
#=GR bacteria.SM-A06 SS  <<<<<<......<<<<<.....<<<<........>>>>>>

bacteria.SM-A06	GAGCAAUCGUCGUGCACAGAUAGAUGGUCGUCGACGCCCC
#=GR bacteria.SM-A06 SS  >>....<<<<<<<.<.................>>>>>>..

bacteria.SM-A06	AGCGGCGUUACAGAACCCGGCUUA
#=GR bacteria.SM-A06 SS	...<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A09_11 DE converted from brown dataset ct file

bacteria.SM-A09_11		GAGGAAAGUCCGGGCUCCACAGGACAGGGUGCCAGAUAA
#=GR bacteria.SM-A09_11 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A09_11	CGUCUGGGAGGCGCAAGCCUACGGCCAGUGCAACAGAAAG
#=GR bacteria.SM-A09_11 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A09_11	UAUACCGCCAGCUUCGGCUGGUAAGGGUGAAAUGGUGCGG
#=GR bacteria.SM-A09_11 SS  ....>>>>>>>>....<<<<<<..<<.......>>>>>>.

bacteria.SM-A09_11	UAAGAGCGCACCGCGCACGUGGUAACACGGGCGGCGAGGG
#=GR bacteria.SM-A09_11 SS  ......<<<<<<>>>>>>>>>....<<<<<<<<.<...<<

bacteria.SM-A09_11	UAAACCCCACCCGGAGCAAGACCAAAUAGGAAAACCAUGA
#=GR bacteria.SM-A09_11 SS  <..<<<<<<<<<<<<<...>>>>......>>>>>>...>>

bacteria.SM-A09_11	CGUUGUCCGCGUCGUUUUCGGGUUGGUCGCUUGAGGCUGG
#=GR bacteria.SM-A09_11 SS  >>>.aaaa<<<<<<<<<<<.....<<<<.......>>>>>

bacteria.SM-A09_11	AGGGUGACCUUCAGUCCAGAUGAAUGAUUAUCCUAGACAG
#=GR bacteria.SM-A09_11 SS  >>>....<<<<<<<<.........................

bacteria.SM-A09_11	AACCCGGCUUAC
#=GR bacteria.SM-A09_11 SS	..<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A10_12 DE converted from brown dataset ct file

bacteria.SM-A10_12		GAGGAAAGUCCGGGCUCCACAGGACAGGGUGCUGGGUAA
#=GR bacteria.SM-A10_12 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A10_12	CUCCCAGUCCUGGCGACAGGAAGGAAAGUGCCACAGAAAG
#=GR bacteria.SM-A10_12 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A10_12	GAGACCGCCUCGUUUGAUGUCUGAGACAUCGGAUGGGGUA
#=GR bacteria.SM-A10_12 SS  ....>>>>>>>>>>>>>>>>>...<<<<<<<<<<<<<<<.

bacteria.SM-A10_12	AGGGUGAAAGGGUGAGAUAAGAGCUCACCAGUCCAGCCGG
#=GR bacteria.SM-A10_12 SS  .<<.......>>>>>>.......<<<<<<>>>>>>>>>>.

bacteria.SM-A10_12	CGACGGUUGGAGCUUGGUAAACCCCGCCUGGAGCAAGACC
#=GR bacteria.SM-A10_12 SS  ...<<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>

bacteria.SM-A10_12	AAAUAGGGGAGCGCAUGAGGGUGGUCCGCCCGAGCUUCCG
#=GR bacteria.SM-A10_12 SS  ......>>>>>>....>>>>>>.aaaa<<<<<<<<<<<<.

bacteria.SM-A10_12	GGUAGGUCGCUUGACCUCGAUGGAGACAUCGAGGCUAGAU
#=GR bacteria.SM-A10_12 SS  ....<<<<......>>>>>>>>....<<<<<<<<......

bacteria.SM-A10_12	GAAUGGUCAUUGUCUUGAAAGUGGGUGACUACUUCGGGAA
#=GR bacteria.SM-A10_12 SS  ...........>>>>>>>.>>>>>....<<<<<<<<<<<<

bacteria.SM-A10_12	ACAGAAUCCGGCUUAC
#=GR bacteria.SM-A10_12 SS	......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A11_13 DE converted from brown dataset ct file

bacteria.SM-A11_13		GAGGAAAGUCCGGGCUCCACAGGACAGAGUGCCAGGUAA
#=GR bacteria.SM-A11_13 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A11_13	CGCCUGGGGGGCGUGAGCCUACGGAAAGUGCAGCAGAAAA
#=GR bacteria.SM-A11_13 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A11_13	UAAACCGCCUCUUCGGAGGUAAGGGUGAAAUGGUGCGGUA
#=GR bacteria.SM-A11_13 SS  ....>>>>>>>....<<<<<..<<.......>>>>>>...

bacteria.SM-A11_13	AGAGCGCACCGCGUGUUCUGGCAACACGACGCGGCUAGGU
#=GR bacteria.SM-A11_13 SS  ....<<<<<<>>>>>>>>>>....<<<<<<<<.<<..<<<

bacteria.SM-A11_13	AAACCCCACUCGGAGCAAGACCAAAUAGGGGAACAUUAUG
#=GR bacteria.SM-A11_13 SS  ..<<<<<<<<<<<<<...>>>>......>>>>>>....>>

bacteria.SM-A11_13	UGCGGUCCGCACUGUUCCCGGGUAGGUUGCAAGAGGUGUG
#=GR bacteria.SM-A11_13 SS  >>>.aaaa<<<<<<<<<<<.....<<<<......>>>>>>

bacteria.SM-A11_13	UGGCGACACACAUCCCAGAUGAAUGACUGUUCACGACAGA
#=GR bacteria.SM-A11_13 SS  >>....<<<<<<<<..........................

bacteria.SM-A11_13	ACCCGGCUUAU
#=GR bacteria.SM-A11_13 SS	.<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A13_15 DE converted from brown dataset ct file

bacteria.SM-A13_15		GAGGAAAGUCCGGGCUCCUUAGGGCAGGAUGCUGGGUAA
#=GR bacteria.SM-A13_15 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A13_15	CUCCCAGCGGGACAGGGCAUAAGGCCUGUUCCAGCGCCAG
#=GR bacteria.SM-A13_15 SS  ..<<<<<>>>>>>>>>........<<<<<<<<.<>>...>

bacteria.SM-A13_15	UGCAACAGAAAAUAUACCGCCGGACUUUGUCCGGUAAGGG
#=GR bacteria.SM-A13_15 SS  >>>>............>>>>>>>>>...<<<<<<<..<<.

bacteria.SM-A13_15	UGAAAUGGCGGGUUAAGAGCCCACCGGCAGGCUGGUGACA
#=GR bacteria.SM-A13_15 SS  ......>>>>>>.......<<<<<<>>>>>>>>>....<<

bacteria.SM-A13_15	GCCUGGUCUGGUAAACCGCAUCCGGAGCAAAGCCAAAUAG
#=GR bacteria.SM-A13_15 SS  <<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>......

bacteria.SM-A13_15	GGAAGGUAUGGAGCUGCCCGCUCUUCUUCCGAGUUGGCCG
#=GR bacteria.SM-A13_15 SS  >>>>>>...>>>>>.aaaa<<<<<<<<<<<.....<<<<.

bacteria.SM-A13_15	CUUGAGAUAAGCAGUAAUGAUUAUCCUAGAUGGAUGACUG
#=GR bacteria.SM-A13_15 SS  .....>>>>>>>>....<<<<<<<<...............

bacteria.SM-A13_15	CCGCUGACUGUGCGAGAGUGCAGUUAGUACAGAAUCCGGC
#=GR bacteria.SM-A13_15 SS  ..>>>>>>>>>>>....<<<<<<<<<<<......<<<<<<

bacteria.SM-A13_15	UUAC
#=GR bacteria.SM-A13_15 SS	<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A16_21 DE converted from brown dataset ct file

bacteria.SM-A16_21		GAGGAAAGUCCGGGCAACAAAGAGCGCCAUACUUCCUAA
#=GR bacteria.SM-A16_21 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A16_21	CGGGAAGGAGGCUGACUGGAGACGGUCAGUUUACAGAAAG
#=GR bacteria.SM-A16_21 SS  ..<<<<<>>>>>>>>>>>....<<<<<<<<<<.<>>...>

bacteria.SM-A16_21	UGCCACAGAAAAUAUACCGUUCCGAUAGCUAUCGGGAUAA
#=GR bacteria.SM-A16_21 SS  >>>>............>>>>>>>>>>....<<<<<<<<..

bacteria.SM-A16_21	GGGUGAAAAGGUAGGGUAAGAGCCUACCGCUCCGCCAGUG
#=GR bacteria.SM-A16_21 SS  <<.......>>>>>>.......<<<<<<>>>>>>>>>...

bacteria.SM-A16_21	AUGUCGGGGGCAUGGUAAACCUUAUGGGUUGAAAGAUCAA
#=GR bacteria.SM-A16_21 SS  .<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>..

bacteria.SM-A16_21	AUAGGUUCCGCAUUGGAUUAAGUUCCAAGAAGAGUUGCUC
#=GR bacteria.SM-A16_21 SS  ....>>>>>>>.>>>>>......<<<<<.>>>>>>.aaaa

bacteria.SM-A16_21	GCUCUUACGCGGAAUGGGUAGAUCGAUGGAUCCUGAUUGU
#=GR bacteria.SM-A16_21 SS  <<<<<<..<<<<<<<.....<<<<......>>>>>>>>..

bacteria.SM-A16_21	GAAGUCAGGGCUAGAUAAAUGGCAAGAAUCCUUUUGGUUU
#=GR bacteria.SM-A16_21 SS  ..<<<<<<<<.................>>>>>>>>>>>..

bacteria.SM-A16_21	AUAUCAGAUGGAAACAGAACCCGGCUUAC
#=GR bacteria.SM-A16_21 SS	..<<<<<<<<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A17_26 DE converted from brown dataset ct file

bacteria.SM-A17_26		GAGGAAAGUCCGGGCUCCGCAGGGCGGGAUGCCAGGUAA
#=GR bacteria.SM-A17_26 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A17_26	UGCCUGGGAGGUGAAAACCUAUGGAAAGUGCCACAGAAAA
#=GR bacteria.SM-A17_26 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A17_26	UAUACCGCCCCGCCGCGCACGCGCGCUGGGGUAAGGGUGA
#=GR bacteria.SM-A17_26 SS  ....>>>>>>>>>>>>....<<<.<<.<<<<<..<<....

bacteria.SM-A17_26	AAUGGUGCGGUAAGAGCGCACCGCGCUGCUGGUAACAGCA
#=GR bacteria.SM-A17_26 SS  ...>>>>>>.......<<<<<<>>>>>>>>>....<<<<<

bacteria.SM-A17_26	GUGGCAGGGUAAACCCCAUCCGGAGCAAGACCAAAUAGGG
#=GR bacteria.SM-A17_26 SS  <<<.<..<<<..<<<<<<<<<<<<<...>>>>......>>

bacteria.SM-A17_26	AAGCAUGCGACUGGUUCGCAAUCUGUGGCCCGCAGAUGCU
#=GR bacteria.SM-A17_26 SS  >>>>.>>>>>.....<<<<<>>>>>>.aaaa<<<<<<<<<

bacteria.SM-A17_26	UCCGGGUAGGUUGCUUGAGGCAUUCGGUGACGAAUGACCC
#=GR bacteria.SM-A17_26 SS  <<<.....<<<<......>>>>>>>>....<<<<<<<<..

bacteria.SM-A17_26	AGAUGAAUGACUAUCCGUUGUCUCCAGGCUAAUGGAGAUU
#=GR bacteria.SM-A17_26 SS  ...............>>>>>>>>>>>......<<<<<<<<

bacteria.SM-A17_26	CUGACAGAAUCCGGCUUAU
#=GR bacteria.SM-A17_26 SS	<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A18_31 DE converted from brown dataset ct file

bacteria.SM-A18_31		GAGGAAAGUCCGGGCUCCAUGGAAGCGCGGUGCCGGAUA
#=GR bacteria.SM-A18_31 SS  .....>>>.>>>>>>>>>.AAAAAAA.>>>>>>>>>>..

bacteria.SM-A18_31	ACGUCCGGCGGGGGCGACCUCAGGGAAAGUGCCACAGAAA
#=GR bacteria.SM-A18_31 SS  ...<<<<<>>>>>....<<<<.<>>...>>>>>.......

bacteria.SM-A18_31	GCAAACCGCCCUCGAGGCCGAAAGGCUUCGCGGAGGGUAA
#=GR bacteria.SM-A18_31 SS  .....>>>>>>>>>>>>>>....<<<<<<...<<<<<<..

bacteria.SM-A18_31	GGGUGAAAGGGUGCGGUAAGAGCGCACCGCGUCUUUGGCA
#=GR bacteria.SM-A18_31 SS  <<.......>>>>>>.......<<<<<<>>>>>>>>>...

bacteria.SM-A18_31	ACAAAGGCGGCAAGGCAAACCCCACCGGGAGCAAGACCAA
#=GR bacteria.SM-A18_31 SS  .<<<<<<<<.<..<<<..<<<<<<<<<<<<<...>>>>..

bacteria.SM-A18_31	AUAGGGGCUGCACGGACGAGAGAUCGUCCAGGUCUGUUUC
#=GR bacteria.SM-A18_31 SS  ....>>>>>>>..>>>>>>....<<<<<<.>>>>.aaaaa

bacteria.SM-A18_31	CAGACCCGCGGCCCGGGUUGGUUGCAAGAGGCGUCUCGCA
#=GR bacteria.SM-A18_31 SS  aa<<<<.<<<<<<<.....<<<<......>>>>>>>>...

bacteria.SM-A18_31	AGAGGCGUCCCAGAUGAAUGGCCAUCACCUCGCAGCAAUG
#=GR bacteria.SM-A18_31 SS  .<<<<<<<<.................>>>>>>>>....<<

bacteria.SM-A18_31	CGAGGAACAGAACCCGGCUUA
#=GR bacteria.SM-A18_31 SS	<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A19_32 DE converted from brown dataset ct file

bacteria.SM-A19_32		GAGGAAAGUCCGGGCUCCUUCGGACAGGGCGCCAGGUAA
#=GR bacteria.SM-A19_32 SS  .....>>>.>>>>>>>>>.AAAAAA.>>>>>>>>>>...

bacteria.SM-A19_32	CGCCUGGGGGGCGUGAGCCCAUGGAAAGUGCCACAGAAAA
#=GR bacteria.SM-A19_32 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SM-A19_32	UAUACCGCCAGCUUUGCUGGUAAGGGUGAAAAGGUGCGGU
#=GR bacteria.SM-A19_32 SS  ....>>>>>>>>...<<<<<<..<<.......>>>>>>..

bacteria.SM-A19_32	AAGAGCGCACCGCGCGACUGGUAACAGUUCGCGGCUCGGU
#=GR bacteria.SM-A19_32 SS  .....<<<<<<>>>>>>>>>....<<<.<<<<<.<..<<<

bacteria.SM-A19_32	AAACCCCGCCCGGAGCAAGACCAAAUAGGGGAGUAGGGCU
#=GR bacteria.SM-A19_32 SS  ..<<<<<<<<<<<<<...>>>>......>>>>>>.>>>>.

bacteria.SM-A19_32	UCGGCCCGCCGUCGGUUCCGAACGGACUCCCGGGUAGGUU
#=GR bacteria.SM-A19_32 SS  ...<<<<.>>>>..aa.aaaa<<<<<<<<<<.....<<<<

bacteria.SM-A19_32	GCUAGAGGUAGCCGGUGACGGCUAUCCCAGAUGAAUGGUU
#=GR bacteria.SM-A19_32 SS  ......>>>>>>>>....<<<<<<<<..............

bacteria.SM-A19_32	GUCGAUGACAGAACCCGGCUUA
#=GR bacteria.SM-A19_32 SS	.............<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A21_35 DE converted from brown dataset ct file

bacteria.SM-A21_35		GAGGAAAGUCCGGGCAGCAUAGAGUGCCGUACUUCCUAA
#=GR bacteria.SM-A21_35 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A21_35	CGGGAAGGUCCCAAUAAAACGGGAACAGAAAGUGCCACAG
#=GR bacteria.SM-A21_35 SS  ..<<<<<>>>>>........<<<<.<>>...>>>>>....

bacteria.SM-A21_35	AAAAUAUACCGUCUCGAUCUAAUCGGGAUAAGGGUGAAAU
#=GR bacteria.SM-A21_35 SS  ........>>>>>>>>>>...<<<<<<<<..<<.......

bacteria.SM-A21_35	GGUGAGGUAAGAGCUCACCGCUUCUGCAGUGAUGCAGUUG
#=GR bacteria.SM-A21_35 SS  >>>>>>.......<<<<<<>>>>>>>>>....<<<<<<<<

bacteria.SM-A21_35	GCAGGGUAAACCUUACGGGUUGAAAGGCCAAAUAGGUCCU
#=GR bacteria.SM-A21_35 SS  .<..<<<..<<<<<<<<<<<<<...>>>>......>>>>>

bacteria.SM-A21_35	GUUUUCCUUCGUGGAAUUGGGUUGCUCGCUCAAUCGCAAG
#=GR bacteria.SM-A21_35 SS  >>.>>>>.....<<<<>>>>>>.aaaa<<<<<<>>....<

bacteria.SM-A21_35	AGGCAGGAUGGGUAGGCUGAUCGAUCCCGGUAGCGAUACC
#=GR bacteria.SM-A21_35 SS  <.<<<<<<<.....<<<<......>>>>>>>>....<<<<

bacteria.SM-A21_35	GGGACCAGAUAAAUGAUAAGAUUCCGUUCAUUUCGGGAAC
#=GR bacteria.SM-A21_35 SS  <<<<.................>>>>>.......<<<<<..

bacteria.SM-A21_35	AGAACCCGGCUUA
#=GR bacteria.SM-A21_35 SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A25_39 DE converted from brown dataset ct file

bacteria.SM-A25_39		GAGGAAAGUCCGGGCUCCACAGAGAAUGAUGCCGGGUAA
#=GR bacteria.SM-A25_39 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A25_39	UGCCCGGGCCUGUUCAGACUCUCUGCAUUGCAGUUUGUUA
#=GR bacteria.SM-A25_39 SS  ..<<<<<>>>>>>>>>>>>>...........<<<<<<...

bacteria.SM-A25_39	AGCAGGACAGAUAGUGCCACAGAAAUAAACCGCCUGGUUU
#=GR bacteria.SM-A25_39 SS  <<<<<<.<>>...>>>>>...........>>>>>>>>>>>

bacteria.SM-A25_39	AAAAUCUUGGAUUUUCAGUCAGGUAAGGGUGAAAAGGCGA
#=GR bacteria.SM-A25_39 SS  >>>>.>....<<<<<<<<<<<<<<..<<.......>>>>>

bacteria.SM-A25_39	GGUAAGAGCUCACCGGUCAACCGGUAACGGAUGAUGCAAG
#=GR bacteria.SM-A25_39 SS  >.......<<<<<<>>>>>>>>>....<<<<<<<<.<..<

bacteria.SM-A25_39	GUAAACCUCAUCAGGAGCAAAGUCAAAUAGGUAGGAGGGU
#=GR bacteria.SM-A25_39 SS  <<..<<<<<<<<<<<<<...>>>>......>>>>>>>>>>

bacteria.SM-A25_39	UUCUCGUCCAUAUCCUACGGGUAGAUUGCUAAAAGCUUUC
#=GR bacteria.SM-A25_39 SS  .aaaa<<<<...<<<<<<.....<<<<......>>>>>>>

bacteria.SM-A25_39	AGCAAUGGUAGUUUUAGAUAGAUGGUAAUCCUAGACAGAA
#=GR bacteria.SM-A25_39 SS  >....<<<<<<<<...........................

bacteria.SM-A25_39	CCCGGCUUAC
#=GR bacteria.SM-A25_39 SS	<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A30_48 DE converted from brown dataset ct file

bacteria.SM-A30_48		GAGGAAAGUCCGGGCUGCAAGUGAGACAGGACUCCAUCU
#=GR bacteria.SM-A30_48 SS  .....>>>.>>>>>AAAA..>>>>>>>.>>>>>>>>>>.

bacteria.SM-A30_48	AACGGAUGGCCAGAGUAAUCUGAGGGCAAGUGCAACAGAA
#=GR bacteria.SM-A30_48 SS  ....<<<<<>>>.>.....<<<.<>>...>>>>>......

bacteria.SM-A30_48	AGUAGGUAGCCACUUCGGUGGUGACAGUGAAAGGGUGGGG
#=GR bacteria.SM-A30_48 SS  ......>>>>>>>....<<<<<..<<.......>>>>>>.

bacteria.SM-A30_48	UAAGAGCCCACCAGUGCUUAUGGUAACAUAGGCAGCUAGG
#=GR bacteria.SM-A30_48 SS  ......<<<<<<>>>>>>>>>>....<<<<<<<<.<<.<<

bacteria.SM-A30_48	UAAACCCUGUCCGCAGCAAGAAGUAUAUGGUAUAAGUCUC
#=GR bacteria.SM-A30_48 SS  <..<<<<<<<<<aaaa...>>>>......>>>>>><<<<<

bacteria.SM-A30_48	ACAAGCUGUUAGAUCAGCACUCAUACUUCGCUUGAACGUA
#=GR bacteria.SM-A30_48 SS  <<......<<<<<<...........<<<<......>>>>>

bacteria.SM-A30_48	UUGGCAACAACACGUCUAGAUAAAUAACUACCCACGACAG
#=GR bacteria.SM-A30_48 SS  >>>....<<<<<<<<.........................

bacteria.SM-A30_48	AACCCGGCUUA
#=GR bacteria.SM-A30_48 SS	..<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.SM-A55_84 DE converted from brown dataset ct file

bacteria.SM-A55_84		GAGGAAAGUCCGGGCUCUAGAGGGCGCGGCGGUCGUUAA
#=GR bacteria.SM-A55_84 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.SM-A55_84	CAACGACUGUCCUGACAUGUACAGGAUAAGGAAAGUGCCA
#=GR bacteria.SM-A55_84 SS  ..<<<<<>>>>>>>.......<<<<<<.<>>...>>>>>.

bacteria.SM-A55_84	CAGAAAAUAUACCGCCCUGAGCUUGUCGAAGGGUAAGGGU
#=GR bacteria.SM-A55_84 SS  ...........>>>>>>>>>>.....<<<<<<<<..<<..

bacteria.SM-A55_84	GAAAUGGUGAGGUAAGAGCUCACCAGUAUCCCAAGUGAUU
#=GR bacteria.SM-A55_84 SS  .....>>>>>>.......<<<<<<>>>>>>>>>>....<<

bacteria.SM-A55_84	GGGAUAGCUUGGCAAACCCCGCUGAGAGCAAAACCAAAUA
#=GR bacteria.SM-A55_84 SS  <<<<<<.<<.<<<..<<<<<<<<<<<<<...>>>>.....

bacteria.SM-A55_84	GGGGAGCACUGAAAUGUACAUCAUUUCAUCAAGUGGCCCG
#=GR bacteria.SM-A55_84 SS  .>>>>>>..>>>>>>>.....<<<<<<<>>>>>>.aaaa<

bacteria.SM-A55_84	CUUGAAGCUCCCGGGUAGGUUGCUAGAGGUACCUGGCAAC
#=GR bacteria.SM-A55_84 SS  <<<<<.<<<<<<.....<<<<......>>>>>>>>....<

bacteria.SM-A55_84	AGGUAUCCCAGAUGAAUGACCAUUACCCCAACCAUCUGAU
#=GR bacteria.SM-A55_84 SS  <<<<<<<.................>>>>>>>>>....<<<

bacteria.SM-A55_84	UGGGGGACAGAAUCCGGCUUAU
#=GR bacteria.SM-A55_84 SS	<<<<<<......<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.SMB-A5 DE converted from brown dataset ct file

bacteria.SMB-A5		GAGGAAAGUCCGGGCUCCAGAGGGCAGGGUGCCAGGUAA
#=GR bacteria.SMB-A5 SS  ..............>>>>...AAAA.>>>>>>>>>>...

bacteria.SMB-A5	CACCUGGGGGGCGCGAGCCUACGGAAAGUGCAGCAGAAAG
#=GR bacteria.SMB-A5 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.SMB-A5	UAUACCGCCCAAAAAUGGGGUGCUGCCCCAUUUGAGCGCC
#=GR bacteria.SMB-A5 SS  ....>>>>>>>.>>>>>>>>>...<<<<<<<<<....>>>

bacteria.SMB-A5	AUUCGUGGCUGGGUAAGGGUGAAACGGUGCGGUAAGAGCG
#=GR bacteria.SMB-A5 SS  >....<<<<<<<<<..<<.......>>>>>>.......<<

bacteria.SMB-A5	CACCGCGCGGCUGGUAACAGGCGUGGCGAUGGUAAACCCC
#=GR bacteria.SMB-A5 SS  <<<<>>>>>>>>>....<<<<<<<<.<...<<<..<<<<<

bacteria.SMB-A5	ACUCGGAGCAAGACCAAAUAGGAAUCCGUCAGCUGUGGCC
#=GR bacteria.SMB-A5 SS  <<<<<<<<...>>>>......>>>>>>....>>>>>.aaa

bacteria.SMB-A5	CGCAGCGGAUUCGGGUAGGUCGCUACAGGCAGGUGGUGAC
#=GR bacteria.SMB-A5 SS  a<<<<<<<<<<<.....<<<<......>>>>>>>>....<

bacteria.SMB-A5	ACCUGUCGCAGAUG
#=GR bacteria.SMB-A5 SS	<<<<<<<.......

//
# STOCKHOLM 1.0

#=GS bacteria.Synechococcus-PCC6717 DE converted from brown dataset ct file

bacteria.Synechococcus-PCC6717		GGGGAGGAAAGUCCGGGCUUCCGAAAGACCAAGCUUGCU
#=GR bacteria.Synechococcus-PCC6717 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Synechococcus-PCC6717	GGGUAACGCCCAGUGCGGGUGACCGUGAGGAAAGUGCCAC
#=GR bacteria.Synechococcus-PCC6717 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Synechococcus-PCC6717	AGAAAUAUACCGCCGAUGGAGGGAAACCUCACAGGUAAGG
#=GR bacteria.Synechococcus-PCC6717 SS  .........>>>>>...>>>>>.....<<<.<<<<<..<<

bacteria.Synechococcus-PCC6717	GUGCAACGGUGCGGUAAGAGCGCACCAGCAACAUCGAGAG
#=GR bacteria.Synechococcus-PCC6717 SS  .......>>>>>>.......<<<<<<>>>>>>>>>....<

bacteria.Synechococcus-PCC6717	GUGUUGGCUCGGUAAACCCCGGCUGGAAGCAAGGUGUGCU
#=GR bacteria.Synechococcus-PCC6717 SS  <<<<<<.<<.<<<..<<<<<<<<<aaaaa...>>>.....

bacteria.Synechococcus-PCC6717	AGCGCUAAAGAACCAGGGUUGGUCUUUUCCCCAGUUCUUG
#=GR bacteria.Synechococcus-PCC6717 SS  ...>>>>>.>>>...>>>.<<<<<<<..<<<...<<<<<<

bacteria.Synechococcus-PCC6717	GCUAGCCAGAGCCGCUAGAGGCACCUGGUAACAGGUGUCC
#=GR bacteria.Synechococcus-PCC6717 SS  <<........<<<......>>>>>>>>....<<<<<<<<.

bacteria.Synechococcus-PCC6717	CAGAUAGAUAACCCCCUUUGAACAGAACCCGGCUUA
#=GR bacteria.Synechococcus-PCC6717 SS	...........................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Synechococcus-PCC7001 DE converted from brown dataset ct file

bacteria.Synechococcus-PCC7001		GGGGAGGAAAGUCCGGGCUCCCCAAUGGCCAGGCUUGCU
#=GR bacteria.Synechococcus-PCC7001 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Synechococcus-PCC7001	GGGUAACGCCCAGUGCGGGUGACCGUGAGGAGAGUGCCAC
#=GR bacteria.Synechococcus-PCC7001 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Synechococcus-PCC7001	AGAAACACACCGCCGAUGGCUCCGCUUCCGCUGCGGUGGA
#=GR bacteria.Synechococcus-PCC7001 SS  .........>>>>>..>>>>>.>>>>>>>>>....<<<<<

bacteria.Synechococcus-PCC7001	GACGAGCACAGGCAAGGGUGCAAAGGUGCGGUAAGAGCGC
#=GR bacteria.Synechococcus-PCC7001 SS  <<<<<<<.<<<<<..<<.......>>>>>>.......<<<

bacteria.Synechococcus-PCC7001	ACCAGCAGCAUCGAGAGGUGCUGGCUCGGUAAACCCCGGC
#=GR bacteria.Synechococcus-PCC7001 SS  <<<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<<<

bacteria.Synechococcus-PCC7001	CGGGAGCAAGGCCCAGGGACCAACGGUUGGCCAUGACACC
#=GR bacteria.Synechococcus-PCC7001 SS  <aaaaa...>>>...>>>>>>...>>>.<<<<<<<..<<<

bacteria.Synechococcus-PCC7001	GGUCCCGCCCCAAGUGCGCCGCUCGAGGCCGCCGGAGACG
#=GR bacteria.Synechococcus-PCC7001 SS  <<<<<<...........<<<......>>>>>>>>....<<

bacteria.Synechococcus-PCC7001	GCGGUCCCAGACAGAUGAUCACCCCGGGCAGGGUCCGCCC
#=GR bacteria.Synechococcus-PCC7001 SS  <<<<<<.................>>>>>.>>>>.....<<

bacteria.Synechococcus-PCC7001	CACCCGGAACAGAACCCGGCUUA
#=GR bacteria.Synechococcus-PCC7001 SS	<<<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Synechocystis-PCC6308 DE converted from brown dataset ct file

bacteria.Synechocystis-PCC6308		GGGGAGGAAAGUCCGGGCUCCCAAAAGAUCAAACUUGCU
#=GR bacteria.Synechocystis-PCC6308 SS  ........>>>.>>>>>AAAAA.>>>>>>>.>>>.>>>>

bacteria.Synechocystis-PCC6308	GGGUAACGCCCAGUGCGCGUGAGCGUGAGGAUAGUGCCAC
#=GR bacteria.Synechocystis-PCC6308 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Synechocystis-PCC6308	AGAAAAAUACCGCCCGUUUUCGGGUAAGGGUGCAAAGGUG
#=GR bacteria.Synechocystis-PCC6308 SS  .........>>>>>>>....<<<<<..<<.......>>>>

bacteria.Synechocystis-PCC6308	UCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUC
#=GR bacteria.Synechocystis-PCC6308 SS  .>>.......<<<<<<>>>>>>>>>....<<<<<<<.<<.

bacteria.Synechocystis-PCC6308	GGUAAACCCCGGUGGGGAGCAAGGACGGAGGAAUUACGGU
#=GR bacteria.Synechocystis-PCC6308 SS  <<<..<<<<<<<<<aaaaa...>>......>>>>>..>>>

bacteria.Synechocystis-PCC6308	UGAUCUUUUCCCGAUUUCGUCUUCGGUGUACCGCUUGAGG
#=GR bacteria.Synechocystis-PCC6308 SS  .<<<<<<<.<<<<<<<<.............<<......>>

bacteria.Synechocystis-PCC6308	UGAUCAGUAAUGUUCAUCCUAGAUAGAUAACUACCCCUUU
#=GR bacteria.Synechocystis-PCC6308 SS  >>>>>>....<<<<<<<<.................>>>>>

bacteria.Synechocystis-PCC6308	AGUUUACUAAUAGUUUACCAAAGGAACAGAACCCGGCUUA
#=GR bacteria.Synechocystis-PCC6308 SS  >>>>>>>>...<<<<<<<<<<<<<.......<<<<<<<<.

bacteria.Synechocystis-PCC6308	C
#=GR bacteria.Synechocystis-PCC6308 SS	.

//
# STOCKHOLM 1.0

#=GS bacteria.Synechocystis-PCC6803 DE converted from brown dataset ct file

bacteria.Synechocystis-PCC6803		GAGAGUUAGGGAGGGAGUUGCGGAUUCCUGUCACAGGGA
#=GR bacteria.Synechocystis-PCC6803 SS  >>>>>>>>>.>>>>>>>>>.>>>>>>>>>>...<<<<<.

bacteria.Synechocystis-PCC6803	AUCUGAGGAAAGUCCGGGCUUCCCAAAGGCCAAACUUGCU
#=GR bacteria.Synechocystis-PCC6803 SS  <<<<<....BBB.BBBBBAAAAA.>>>>>>>.>>>.>>>>

bacteria.Synechocystis-PCC6803	GGGUAACGCCCAGUGCGCGCGAGCGUGAGGACAGUGCCAC
#=GR bacteria.Synechocystis-PCC6803 SS  >>>.....<<<<<>>>>>....<<<<.<>>...>>>>>..

bacteria.Synechocystis-PCC6803	AGAAAAAUACCGCCCUUUUUAGAAAACAGCAACCAGUAAA
#=GR bacteria.Synechocystis-PCC6803 SS  .........>>>>>.>>>>>>>>>>>>>>>>>>>>>>...

bacteria.Synechocystis-PCC6803	CAGUUAACAGGGUUUUUCUGCUGACUAACUGGUAACUGAC
#=GR bacteria.Synechocystis-PCC6803 SS  >>>>>>>>>>>>...<<<<<<<<<<<<<<<<<<<<<<<<<

bacteria.Synechocystis-PCC6803	CACUGAAAAGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCA
#=GR bacteria.Synechocystis-PCC6803 SS  <<<<<<<<<<<<..<<.......>>>>>>.......<<<<

bacteria.Synechocystis-PCC6803	CCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUU
#=GR bacteria.Synechocystis-PCC6803 SS  <<>>>>>>>>>....<<<<<<<.<<.<<<..<<<<<<<<<

bacteria.Synechocystis-PCC6803	GGAAGCAAGGUCGGAGGGGCAAAGGUUGGUCUUUUUCCUG
#=GR bacteria.Synechocystis-PCC6803 SS  aaaaa...>>>.....>>>>>..>>>.<<<<<<<.<<<<<

bacteria.Synechocystis-PCC6803	CCCCAUGAUUGGUGGAACCGCUUGAGGAAUUUGGUAACAA
#=GR bacteria.Synechocystis-PCC6803 SS  <<<.............<<<......>>>>>>>>....<<<

bacteria.Synechocystis-PCC6803	AUUUCCCAGAUAGAUAACUCCCCAAGGGUGCCUCGCAUCC
#=GR bacteria.Synechocystis-PCC6803 SS  <<<<<..........<<<<<<<>>>>>>>>>...<<<<<<

bacteria.Synechocystis-PCC6803	UGGAACAGAACCCGGCUUACGACUAACUCUCUUUUUUU
#=GR bacteria.Synechocystis-PCC6803 SS	<<<.......bbbbbbbb.<.<<<<<<<<<<.......

//
# STOCKHOLM 1.0

#=GS bacteria.T.album DE converted from brown dataset ct file

bacteria.T.album		GAGGAAAGUCCGGGCACCGCAGGGCAGGGUGGUCGGGAA
#=GR bacteria.T.album SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.T.album	ACCGACCCGGGGAAACCCGCGGGAAAGUGCCACAGAAACG
#=GR bacteria.T.album SS  .<<<<<>>>>>....<<<<.<>>...>>>>>.........

bacteria.T.album	ACACCGCCUAAGCGGCGGGACCGCACGUGAGUCUCGCCGC
#=GR bacteria.T.album SS  ...>>>>>...>>>>>>>>>>>>....<<.<<<<<<<<<<

bacteria.T.album	CGGCAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGGCAGC
#=GR bacteria.T.album SS  .<<<..<<.......>>>>>>.......<<<<<<>>>>>>

bacteria.T.album	GUGGUGACACGCUGGCCGGGCAAACCCCACCCGGUGCAAG
#=GR bacteria.T.album SS  >>>....<<<<<<<.<<.<<<..<<<<<<<<<<<<<...>

bacteria.T.album	GCCAAGCAGGGGCGAUGACGCUGCCCGCCGAGCCCCAGGU
#=GR bacteria.T.album SS  >>>.....>>>>>...>>>>>.aaaa<<<<<<<<<<....

bacteria.T.album	AGGCCGCAGGGCUCCUCGGAGCCCCGUCCGCGGUGGUCCC
#=GR bacteria.T.album SS  .<<<<...>>>>>>....<<<<<<>>>>>>>>>>>>>...

bacteria.T.album	CAGGGACUCGGCGCGGGCGAGAUGGAUGGCUGCUCUCGAC
#=GR bacteria.T.album SS  ...<<<<<...<<<<<<<<.....................

bacteria.T.album	AGAACCCGGCUUA
#=GR bacteria.T.album SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.T.aquaticus DE converted from brown dataset ct file

bacteria.T.aquaticus		UGCCCCAGGAUAGGGGUGCGGUCGCGCCCGGGGGACUUC
#=GR bacteria.T.aquaticus SS  .....>>>>>>>>>>>BBBBBBB.>>>>>>>>>>.....

bacteria.T.aquaticus	CCCCCUGGGUGAGGAAAGUCCGGGCACCAUAGGGCAGGGU
#=GR bacteria.T.aquaticus SS  .<<<<<<<<<<....>>>.>>>>>>>>>...AAAA.>>>>

bacteria.T.aquaticus	GCCAGCUAACGGCUGGGCGGGGCAACCCGACGGAAAGUGC
#=GR bacteria.T.aquaticus SS  >>>>>>.....<<<<<>>>>>....<<<<.<>>...>>>>

bacteria.T.aquaticus	CACAGAGAAGAGACCGCCAGCGGCCGGGGCUUCCCCGGUG
#=GR bacteria.T.aquaticus SS  >............>>>>>>>>.>>>>>>>...<<<<<<<<

bacteria.T.aquaticus	CGGGCAAGGGUGAAACGGUGGGGUAAGAGCCCACCGCCUG
#=GR bacteria.T.aquaticus SS  <<<<<..<<.......>>>>>>.......<<<<<<>>>>>

bacteria.T.aquaticus	GCCUGGCAACAGGCUGGGGCACGGCAAACCCCACCCGGUG
#=GR bacteria.T.aquaticus SS  >>>>>....<<<<<<<<.<<..<<<..<<<<<<<<<<<<<

bacteria.T.aquaticus	CAAGGCCCGAUAGGCAGGAAGGGCUUGCCCGGCCCGUUAG
#=GR bacteria.T.aquaticus SS  ...>>>>......>>>>>..>>>>>.aaaa<<<<<.....

bacteria.T.aquaticus	AACCUGCGGGAUGGGCCGCUUGAGGCCGGUGGCGACACCG
#=GR bacteria.T.aquaticus SS  ..<<<<<......<<<<......>>>>>>>>....<<<<<

bacteria.T.aquaticus	GUCCCAGAGAGAUGACCGCGUAAAACAGAACCCGGCUUAC
#=GR bacteria.T.aquaticus SS  <<<..........bbbbbbb..........<<<<<<<<.<

bacteria.T.aquaticus	GCCCUAUCCUGGGGACCCCGAGCGCAGGCUCGGGG
#=GR bacteria.T.aquaticus SS	.<<<<<<<<<<....>>>>>>>>....<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.T.commune DE converted from brown dataset ct file

bacteria.T.commune		GAGGAAAGUCCGGGCUCCACAGGGGAGGACGCCGGGUAA
#=GR bacteria.T.commune SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.T.commune	CACCCGGAGGGAGUAAUCCCUGGAAAGGGCCACAGAAAAC
#=GR bacteria.T.commune SS  ..<<<<<>>>>>....<<<<<>>...>>>>>.........

bacteria.T.commune	AGACCGCCAGCGGCCAGAAAGGAUUUUUUCCUUUCUGGUG
#=GR bacteria.T.commune SS  ...>>>>>>>>.>>>>>>>>>>>.....<<<<<<<<<<<<

bacteria.T.commune	CGGGCAAGGGUGAAAAGGUGGGGUAAGAGCCCACCGCACC
#=GR bacteria.T.commune SS  <<<<<..<<.......>>>>>>.......<<<<<<>>>>>

bacteria.T.commune	AGGUGGUAACACCUGGUGGCACGGCAACCCCCGUCCGGAG
#=GR bacteria.T.commune SS  >>>>>....<<<<<<<<.<<..<<<..<<<<<<<<<<<<<

bacteria.T.commune	CAAGGCCAAACAGAGCCAUGGGUGCCCCGCCCGCUAAGGC
#=GR bacteria.T.commune SS  ...>>>>......>>>>..>>>>.aaaa<<<<.....<<<

bacteria.T.commune	UCAGGUAGGCCGCUUAAGAAGAGGGGUAACCCUCUUCUCA
#=GR bacteria.T.commune SS  <......<<<<......>>>>>>>>....<<<<<<<<...

bacteria.T.commune	GAGAAAUAAUCACCGCCUGGGGAAAAUUUCCCCAGGUAAC
#=GR bacteria.T.commune SS  ..............>>>>>>>>>>...<<<<<<<<<<...

bacteria.T.commune	AGAACCCGGCUUA
#=GR bacteria.T.commune SS	....<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.T.maritima DE converted from brown dataset ct file

bacteria.T.maritima		GGAGAGGAGCAGGCGGUCGCGGGGGCGCACACCUGCGCU
#=GR bacteria.T.maritima SS  >>>>>>>>>>>BBBBBBB.>>>>>>>>>>....<<<<<.

bacteria.T.maritima	UCCCGAGGAAAGUCCGGACUCUGGAGCGGGGUGCCGGGUA
#=GR bacteria.T.maritima SS  <<<<<....>>>.>>>>>>>>>.AAAA.>>>>>>>>>>..

bacteria.T.maritima	ACGCCCGGGAGGGGUGACCCUCGGACAGGGCCAUAGAGAA
#=GR bacteria.T.maritima SS  ...<<<<<>>>>>....<<<<<>>...>>>>>........

bacteria.T.maritima	GAAGACCGCCCGUUGAGGGCAAGGGUGGAACGGUGGGGUA
#=GR bacteria.T.maritima SS  .....>>>>>>.....<<<<..<<.......>>>>>>...

bacteria.T.maritima	AGAGCCCACCAGCGUCGGGGCAACCCGGCGGCUUGGCAAC
#=GR bacteria.T.maritima SS  ....<<<<<<>>>>>>>>>....<<<<<<<.<<.<<<..<

bacteria.T.maritima	CCCCACCUGGAGCAAGGCCAAGCAGGGGGUUGGGUCGCUC
#=GR bacteria.T.maritima SS  <<<<<<<<<<<<...>>>>.....>>>>>.>>>>>.aaaa

bacteria.T.maritima	CCCCUAUUCCCCCGGGUUGGCCGCUUGAGGUGUGCGGUAA
#=GR bacteria.T.maritima SS  .<<<<<..<<<<<.....<<<<......>>>>>>>>....

bacteria.T.maritima	CGCACACCCCAGAUUGAUGACCGCCCACGACAGAAUCCGG
#=GR bacteria.T.maritima SS  <<<<<<<<..........bbbbbbb..........<<<<<

bacteria.T.maritima	CUUAUGCUCCUCUCCCGUG
#=GR bacteria.T.maritima SS	<<<.<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.T.pallidum DE converted from brown dataset ct file

bacteria.T.pallidum		AGAGAACUGCAGAUAGUCGCUGCGGGUUUCUCGCAGAGG
#=GR bacteria.T.pallidum SS  >>>>>>>>.>>BBBBBBB.>>>>>>>...<<<<<<<...

bacteria.T.pallidum	AAAGUCCGGACUCCUUCGGAAAUGAUGCUAGUUAAUUACU
#=GR bacteria.T.pallidum SS  .>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>.....<<<

bacteria.T.pallidum	AGGCAGCGGCUCUCUGCAGUGCCGCUGACAGCAAGCGCCA
#=GR bacteria.T.pallidum SS  <<>>>>>>>>>>>....<<<<<<<<<<.<>>...>>>>>.

bacteria.T.pallidum	CAGAAAAUAUACCGCCUUUGGGUAAGGGUGAAAGGGCGAG
#=GR bacteria.T.pallidum SS  ...........>>>>>....<<<..<<.......>>>>>>

bacteria.T.pallidum	GUAAGAGCUCACCGCGUUUUGGCGACAAAACGGCACGGCA
#=GR bacteria.T.pallidum SS  .......<<<<<<>>>>>>>>....<<<<<<<.<..<<<.

bacteria.T.pallidum	AGCCUCAUCAGGAGCAAGAUCGAGCAGCAAAGGAUAUUCC
#=GR bacteria.T.pallidum SS  .<<<<<<<<<aaaa...>>>>.....>>>>>>>>..<<<<

bacteria.T.pallidum	GAUCCUGUUUUGCGGGUUGAUUGCAUAAAUUUAUAUAGCG
#=GR bacteria.T.pallidum SS  <<<<<...<<<<<.....<<<<......>>>>>>>>....

bacteria.T.pallidum	AUAUAUAAAGUGAGACAGAUGAUUAUCCUUGACAGAAUCC
#=GR bacteria.T.pallidum SS  ..<<<<<<<<..........bbbbbbb..........<<<

bacteria.T.pallidum	GGCUUACCAGUUCUCUGUUUU
#=GR bacteria.T.pallidum SS	<<<<<.<<<<<<<<<<.....

//
# STOCKHOLM 1.0

#=GS bacteria.V.spinosum DE converted from brown dataset ct file

bacteria.V.spinosum		GAGGAAAGUCCGGGCACCUCAGGGCAGUGUGCCGUGUGA
#=GR bacteria.V.spinosum SS  .....>>>.>>>>>AAAA.>>>>>>.>>>>>>>>>>>..

bacteria.V.spinosum	AAACGCGGGGGCUGGCGGCGUAAGCUUCCGGUCACGGAAA
#=GR bacteria.V.spinosum SS  ..<<<<<<>>>>>>>>>>>....<<<<<<<<<<.<>>...

bacteria.V.spinosum	GUGUCACAGAAAACAUACCGCCGCGGGCAACUGCGGUAAG
#=GR bacteria.V.spinosum SS  >>>>>............>>>>>>>>>....<<<<<<<..<

bacteria.V.spinosum	GGUGAAAAGGCGAGGUAAGAGCUCACCGCUCCGACUGAAA
#=GR bacteria.V.spinosum SS  <.......>>>>>>.......<<<<<<>>>>>>>>>....

bacteria.V.spinosum	GGAAGGAGGCAGGACAAACCCCACACGGUGCAAGACAGAA
#=GR bacteria.V.spinosum SS  <<<<<<<<.<..<<<..<<<<<<<<<aaaa...>>>....

bacteria.V.spinosum	CAGGGGAAACGGCCCGCCCUGGCCGCACUGACUCCGCAAG
#=GR bacteria.V.spinosum SS  ..>>>>....>>>>.<<<<<<<<<<..>>>>>>>>....<

bacteria.V.spinosum	GAGUUGGGAUAACCCCGGGUAUUAGUCGCACCUCGCGCAA
#=GR bacteria.V.spinosum SS  <<<<<<<.....<<<<........<<<...>>>>>>....

bacteria.V.spinosum	AGCGGGGAGCACGGGGCGCAAGCCCCGGGCUAGAGAAAUG
#=GR bacteria.V.spinosum SS  .<<<<<<>>>>>>>>>>....<<<<<<<<<<.........

bacteria.V.spinosum	ACCGCCACCUUUUGCGGCAACGCGGGAGGCACAGAACCCG
#=GR bacteria.V.spinosum SS  ......>>>>>>>>>>....<<<<<<<<<<......<<<<

bacteria.V.spinosum	GCUUA
#=GR bacteria.V.spinosum SS	<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.Wolbachia-sp DE converted from brown dataset ct file

bacteria.Wolbachia-sp		UAGGUGGAAUAAGUAGCUGCUGUUGUGUGAUAAACAUAG
#=GR bacteria.Wolbachia-sp SS  >>>>>>>>>>>BBBBBBB.>>>>>>>>>.....<<<<<<

bacteria.Wolbachia-sp	CAGAGGAAAGUCCGGGCUCCAAGGAAAAAUAGUGACGGGU
#=GR bacteria.Wolbachia-sp SS  <<<....>>>.>>>>>AAAA.>>>>>>>.>>>>>>>>>>.

bacteria.Wolbachia-sp	AAUGCCCGCCGGAGGUAACUCCAGUUAUAGGGCUACAGAA
#=GR bacteria.Wolbachia-sp SS  ....<<<<<>>>>>....<<<<.<>>...>>>>>......

bacteria.Wolbachia-sp	AAUUACCGCCUAAAAUAUUUUUAGGUAAGGGUGAAAAGGU
#=GR bacteria.Wolbachia-sp SS  .....>>>>>>>>>>...<<<<<<<<..<<.......>>>

bacteria.Wolbachia-sp	GUGGUAAGAGCACACCAUGGCAAUGGCAACAUUGGUAGUC
#=GR bacteria.Wolbachia-sp SS  >>>.......<<<<<<>>>>>>>>>....<<<<<<<<.<.

bacteria.Wolbachia-sp	GAGUAACCAACACUAGGAGCAAGAUUAAAUAGAAGUAGAU
#=GR bacteria.Wolbachia-sp SS  .<<<..<<<<<<<<<aaaa...>>>>......>>>>>>>.

bacteria.Wolbachia-sp	UUUAUGUUUUCCUCAUAUCUACUCGGGUAAAUCGCAUGCG
#=GR bacteria.Wolbachia-sp SS  ..>>>><<<<<<<<<<<<<<<<<<.....<<<<......>

bacteria.Wolbachia-sp	GUAAAUGGUAACAUUUACUCCAGAUAAAUAGCUACAUAAA
#=GR bacteria.Wolbachia-sp SS  >>>>>>>....<<<<<<<<..........bbbbbbb....

bacteria.Wolbachia-sp	CAGAACUCGGCUUAUAUUUCACCUAGGCG
#=GR bacteria.Wolbachia-sp SS	.....<<<<<<<<.<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.X.fastidiosa DE converted from brown dataset ct file

bacteria.X.fastidiosa		GCGGUGAAGUCGGCUGGGCAGUCGCGUCAUCCGAGAGGA
#=GR bacteria.X.fastidiosa SS  .....>>>>>>>>>>>BBBBBBB.>>>>>>>>....<<<

bacteria.X.fastidiosa	UGCCGAGGAAAGUCCGGGCUCCAUAGGGCAAGGUGCCAGG
#=GR bacteria.X.fastidiosa SS  <<<<<....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>

bacteria.X.fastidiosa	UAACACCUGGGCGGCGUGAGUCGACGGAAAGUGCAACAGA
#=GR bacteria.X.fastidiosa SS  .....<<<<<>>>>>....<<<<.<>>...>>>>>.....

bacteria.X.fastidiosa	AAGAUACCGCCAAUAUUCCUUUCUAGGAUUCGGUAAGGGU
#=GR bacteria.X.fastidiosa SS  ......>>>>>>>...>>>>....<<<<<<.<<<..<<..

bacteria.X.fastidiosa	GAAAUGGUGCGGUAAGAGCGCACCGCGAGUUCGGUAACGG
#=GR bacteria.X.fastidiosa SS  .....>>>>>>.......<<<<<<>.>>>>>>>....<<<

bacteria.X.fastidiosa	ACCGGCACGGCAAACCCCACCUGGAGCAAGACCAAAUAGG
#=GR bacteria.X.fastidiosa SS  <<<<.<..<<<..<<<<<<<<<<<<<...>>>>......>

bacteria.X.fastidiosa	GAUCCUAUGGUGUGGCCCGCGCUGGAUCCGGGUAGGUUGC
#=GR bacteria.X.fastidiosa SS  >>>>>...>>>>>.aaaa<<<<<<<<<<<.....<<<<..

bacteria.X.fastidiosa	UUGAGCACCGUGGUGACGCGGUGCCUAGAUGAAUGGCUGU
#=GR bacteria.X.fastidiosa SS  ....>>>>>>>>....<<<<<<<<..........bbbbbb

bacteria.X.fastidiosa	UCAUGACAGAACCCGGCUUAUAGGCCGACUUCACCGCUUU
#=GR bacteria.X.fastidiosa SS	b..........<<<<<<<<.<.<<<<<<<<<<........

//
# STOCKHOLM 1.0

#=GS bacteria.vHge2 DE converted from brown dataset ct file

bacteria.vHge2		GAGGAAAGUCCGGGCUUCAUAGGGCAAGGUGCCAGGUAA
#=GR bacteria.vHge2 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.vHge2	CGCCUGGGCGGUGUGAACCGACGGAAAGUGCAGCAGAGAG
#=GR bacteria.vHge2 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.vHge2	UAGACCGCCUUCAAUAACGUUUCUUUUCGGAGAAAUGGAA
#=GR bacteria.vHge2 SS  ....>>>>>>>>.....>>>>>>>>....<<<<<<<<<<<

bacteria.vHge2	GGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCAUGGC
#=GR bacteria.vHge2 SS  <<<..<<.......>>>>>>.......<<<<<<>>>>>>>

bacteria.vHge2	UGGUAACAGUUCGUGGCAUGGUAAACCCCACCGGAAGCAA
#=GR bacteria.vHge2 SS  >>....<<<.<<<<<.<..<<<..<<<<<<<<<<<<<...

bacteria.vHge2	GACCAAAUAGGGAUCCUAUAGGCAUGGCCCAUGCUGGAUC
#=GR bacteria.vHge2 SS  >>>>......>>>>>>....>>>>>.aaaa<<<<<<<<<<

bacteria.vHge2	CGGGUAGGUCGCUUGAGCGUAUGAGUGAUCAUACGCCUAG
#=GR bacteria.vHge2 SS  <.....<<<<......>>>>>>>>....<<<<<<<<....

bacteria.vHge2	AGGAAUGAUCGUUCUAGACAGAACCCGGCUUC
#=GR bacteria.vHge2 SS	.......................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.vHge3-5 DE converted from brown dataset ct file

bacteria.vHge3-5		GAGGAAAGUCCGGGCUCCGCAGGGCAGGGUGCCGGGUAA
#=GR bacteria.vHge3-5 SS  .....>>>.>>>>>>>>>...AAAA.>>>>>>>>>>...

bacteria.vHge3-5	CUCCCGGUGAAGGUGACUUCAAGGAAAGUGCAACAGAGAU
#=GR bacteria.vHge3-5 SS  ..<<<<<>>>>>....<<<<.<>>...>>>>>........

bacteria.vHge3-5	AUACCGCGGGCUAGAGAACAGAGAACAGAAUAUUAAGUUU
#=GR bacteria.vHge3-5 SS  ...>>>>>>>>>>>>>>>>>>>>>>>>>>>.>>>>>>>>>

bacteria.vHge3-5	GCUGCAAAGGCAAUCGUAAUCUGGUCUCUGACAUCUGUUC
#=GR bacteria.vHge3-5 SS  >>>.....<<<<<<<<<<<<............<<<<<<<<

bacteria.vHge3-5	UCUGUUCUCUGGAACGUAAGGGUGGAAAGGUGAGGUAAGA
#=GR bacteria.vHge3-5 SS  <<<<<<<<<<<<<<<<<..<<.......>>>>>>......

bacteria.vHge3-5	GCUCACCAGCGGCAUGGCGACUUGCCGGUCUAUGUAAACC
#=GR bacteria.vHge3-5 SS  .<<<<<<>>>>>>>>......<<<<<<..<<.<<<..<<<

bacteria.vHge3-5	CCACUCGGAGCAACACCAUGGAGGGACAUAUGGGCUGCCC
#=GR bacteria.vHge3-5 SS  <<<<<<<<<<...>>>>.....>>>>>....>>>>.aaaa

bacteria.vHge3-5	GCCCGUCCCAUGGAGGUGGCUUGAGCUGUACAGAAAUGUA
#=GR bacteria.vHge3-5 SS  <<<<<<<<<.....<<<<......>>>>>>>>....<<<<

bacteria.vHge3-5	UGGCCUAGAUAGAUGAUCGUCAAAUACAGAAUCCGGCUUA
#=GR bacteria.vHge3-5 SS	<<<<...........................<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.A.laidlawii DE converted from brown dataset ct file

bacteria.A.laidlawii		GAGGAAAGUCCGGGCUAGCACACACCUUAUGGGUGUGUA
#=GR bacteria.A.laidlawii SS  .....>>>.>>>>>>>>>>>>>>>>.......<<<<<<.

bacteria.A.laidlawii	GUGUUUGUGCUAAGGGAAAUCAUAACCUUAGGUAUGUUGU
#=GR bacteria.A.laidlawii SS  ....>>>>>>>>>>>..........<<<<<<>>>>>>>..

bacteria.A.laidlawii	AUAAACAUAACGGCAAACUAGUUAUAGCUAAGGUGUUUCA
#=GR bacteria.A.laidlawii SS  ...<<<<<<.<>>......>>>>........>>>>...<<

bacteria.A.laidlawii	CUACGUUAUAACUUAAAUUAAAGUGCCACAGAGACGAAUC
#=GR bacteria.A.laidlawii SS  <<.......<<<<.........>>>>>...........>>

bacteria.A.laidlawii	UAUUUAGAAAUAAAUAGAGUGAAACGCGGUAAACCCCUCA
#=GR bacteria.A.laidlawii SS  >>>>>>....<<<<<<<<.........<<<..<<<<<<<<

bacteria.A.laidlawii	AGCUAGCAACCCAAAUUAGGUAGGGGCACAUGAUGUGUAG
#=GR bacteria.A.laidlawii SS  <<<<<<...>>>..........<<<...>>>>>>>.....

bacteria.A.laidlawii	CAAUACAACAUCAUGCAAGAUUUGAAUCUUGAGAUUAAUA
#=GR bacteria.A.laidlawii SS  ........<<<<<<<>>>>>>....<<<<<<.........

bacteria.A.laidlawii	GUCACAAAAGAAGAAAUUCUUUACAGAACGCGGCUUA
#=GR bacteria.A.laidlawii SS	......>>>>>>....<<<<<<......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.B.anthracis DE converted from brown dataset ct file

bacteria.B.anthracis		UCAUAACGUUUGGGUAAUCGCUGCAACGCCAACGUUGUA
#=GR bacteria.B.anthracis SS  .>>>>>>>>>>>>>>>>>>.>>>>>>>>....<<<<<<<

bacteria.B.anthracis	GAGGAAAGUCCAUGCUCGCACGGCCUGAGAUGGCUGUAGU
#=GR bacteria.B.anthracis SS  <....AAA.AAAAA>>>>>>>>>>>......<<<<<<...

bacteria.B.anthracis	GUUCGUGCCUAGCCAAUUCAUAAGCUAGGGUAUUCUGGCU
#=GR bacteria.B.anthracis SS  ..>>>>>>>>>>>..........<<<<<<>>>>>>>>>>>

bacteria.B.anthracis	GUAAGGCUGGUUUAACGGCAGGGAAAAAACCUAAGUCCUU
#=GR bacteria.B.anthracis SS  ....<<<<<<<<<<.<>>.>>>.....>>>>...>>>>..

bacteria.B.anthracis	UCGGAUAUGGUUUGACUACCUUUAAAGUGCCACAGUGACG
#=GR bacteria.B.anthracis SS  ..<<<<..<<<<......<<<.....>>>>>.........

bacteria.B.anthracis	AAGUCCUUGAAGAAAUGAUAGGAGUGGAACGAGGUAAACC
#=GR bacteria.B.anthracis SS  ...>>>>>>>>....<<<<<<<<.........<<<..<<<

bacteria.B.anthracis	CCACGAGCGAGAAACCCAAAUAAUGGUAGGGGAAUCUUUU
#=GR bacteria.B.anthracis SS  <<<<<<<<<<<...>>>...........<<<...>>>>>>

bacteria.B.anthracis	CCAAGGAAAUGAACGAUGGGAAAGGACAGGUUGUAUAACC
#=GR bacteria.B.anthracis SS  >.................<<<<<<<>>>>>>>....<<<<

bacteria.B.anthracis	UGUAGAUAGAUGAUUGCCACCGGAGUACGAGGCGUGGGCC
#=GR bacteria.B.anthracis SS  <<<........<<<<<<<.>>>>>>>>>>>>>>....<<<

bacteria.B.anthracis	GUUUGCAGUACAAAGGAACAGAACAUGGCUUACAGAACGU
#=GR bacteria.B.anthracis SS  <<.....<<<<<<<<<.......aaaaaaaa.<.<<<<<<

bacteria.B.anthracis	UAUGAACCA
#=GR bacteria.B.anthracis SS	<<<<.....

//
# STOCKHOLM 1.0

#=GS bacteria.B.brevis DE converted from brown dataset ct file

bacteria.B.brevis		AUGCAGGAAAUGCGGGUAGCCGCUGCCGCAAUCGUCUCG
#=GR bacteria.B.brevis SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>>....

bacteria.B.brevis	GCGAUUGGCGGUAGAGGAAAGUCCAGGCUCGCCCAAGCUG
#=GR bacteria.B.brevis SS  <<<<<<.<<<<<<<....AAA.AAAAA>>>>>>>>>>>..

bacteria.B.brevis	AGAUGCUUGGAGUGUUCGUACCUGGCGCAAGCCAGGGCAA
#=GR bacteria.B.brevis SS  ....<<<<<<.....>>>>>>>>>>>....<<<<<<>>>.

bacteria.B.brevis	GUGAGGCGCAAGCCUCGCUGACGGCGUGGAAAGGGCUCUC
#=GR bacteria.B.brevis SS  >>>>>>>....<<<<<<<<<.<>>.>>>.....>>>..>>

bacteria.B.brevis	UCUGAGGCCCGAGUACGCUGAAAGUGCCACAGAAACGUAG
#=GR bacteria.B.brevis SS  ...<<.<<<......<<<.....>>>>>............

bacteria.B.brevis	CUUUUCUGGCGACAGAAAAGAUGGAACGCGGUAAACCCUG
#=GR bacteria.B.brevis SS  >>>>>>>>....<<<<<<<<.........<<<..<<<<<<

bacteria.B.brevis	CGAGCGAGAAACCCAAAUUUGGUAGGGGAACCGUCCUGAA
#=GR bacteria.B.brevis SS  <<<<<<<<...>>>..........<<<...>>>>>>>...

bacteria.B.brevis	GGAAUCAAACGGAAGGGACGGAUGGUAUCUUCGGAUGCCA
#=GR bacteria.B.brevis SS  ..............<<<<<<<>>>>>>>>....<<<<<<<

bacteria.B.brevis	UAGAUAGAUGGCUACCGCUCUUGGUGCGAGGGAUACGUCC
#=GR bacteria.B.brevis SS  <........<<<<<<<.>>>>>>.>>>>>>>>>....<<<

bacteria.B.brevis	CGCUUGCAGCACGGGAGAGACAGAACCUGGCUUAUAGCAU
#=GR bacteria.B.brevis SS  <<<.....<<<<<<<<<........aaaaaaaa.<.<<<<

bacteria.B.brevis	UUCCUGCUGGAU
#=GR bacteria.B.brevis SS	<<<<<<......

//
# STOCKHOLM 1.0

#=GS bacteria.B.halodurans DE converted from brown dataset ct file

bacteria.B.halodurans		AUCAUAACCGUUCAGGUAACCGCUGCAUCGCAUGCGAUG
#=GR bacteria.B.halodurans SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>>....<<<<<

bacteria.B.halodurans	UAGAGGAAAGUCCAUGCUCGCACAGGCUGAGAUGCUUGUA
#=GR bacteria.B.halodurans SS  <<<....AAA.AAAAA>>>>>>>>>>>......<<<<<<.

bacteria.B.halodurans	GUGUUCGUGCCUAGCGAAGUCAUAAGCUAGGGUAGUCUGG
#=GR bacteria.B.halodurans SS  ....>>>>>>>>>>>..........<<<<<<>>>>>>>>>

bacteria.B.halodurans	UUCUUAGAACUGGGCUAACGGCAAGGUAAGCACCUACGUU
#=GR bacteria.B.halodurans SS  >>.....<<<<<<<<<<.<>>.>>>>....>>>>...>>>

bacteria.B.halodurans	CAUCAUGAAUAUGGUGUGAUGCCUUUGAAAGUGCCACAGU
#=GR bacteria.B.halodurans SS  >.....<<<<..<<<<.....<<<<.....>>>>>.....

bacteria.B.halodurans	GACGUAGUCCGUUUGGAAACAGACGGAGUGGAACGAGGUA
#=GR bacteria.B.halodurans SS  .......>>>>>>>>....<<<<<<<<.........<<<.

bacteria.B.halodurans	AACCCCUCGAGCGAGAAACCCAAAAAUUGGUAGGGGAACC
#=GR bacteria.B.halodurans SS  .<<<<<<<<<<<<<<...>>>...........<<<...>>

bacteria.B.halodurans	UUCUUGAAGGAAAUGAACGGAGAGAAGGACGGAAGUUUUA
#=GR bacteria.B.halodurans SS  >>>>>................<<<<<<<>>>>>>>>...<

bacteria.B.halodurans	CUUCUGUAGACAGAUGGUUACCACCGGAGUACGAGGUUCA
#=GR bacteria.B.halodurans SS  <<<<<<<........<<<<<<<.>>>>>>>>>>>>>>...

bacteria.B.halodurans	UCACCGUUUGUAGUACGAAGGAACAGAACAUGGCUUAUCG
#=GR bacteria.B.halodurans SS  ..<<<<<.....<<<<<<<<<.......aaaaaaaa.<.<

bacteria.B.halodurans	AACGGGAAUGAGA
#=GR bacteria.B.halodurans SS	<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS bacteria.B.megaterium DE converted from brown dataset ct file

bacteria.B.megaterium		UGAAAUAACGUUCAGGUAAUCGCUGCAUCAUUUGAUGUA
#=GR bacteria.B.megaterium SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>....<<<<<<

bacteria.B.megaterium	GAGGAAAGUCCAUGCUCGCACGGUGCUGAGAUGCCCGUAG
#=GR bacteria.B.megaterium SS  <....AAA.AAAAA>>>>>>>>>.>>......<<<<<<..

bacteria.B.megaterium	UGUUCGUGCCUAGUGAAAAAAUAAGCUAGGGCAGCUUGGC
#=GR bacteria.B.megaterium SS  ...>>>>>>>>>>>..........<<<<<<>>>>>>>>>>

bacteria.B.megaterium	UUAUAGCUUAGCUGACGGCGGGAAAAACCACCUAAGUCUU
#=GR bacteria.B.megaterium SS  >...<<<<<<<<<<.<>>.>>>.......>>>...>>>..

bacteria.B.megaterium	UGGAUAUGGUCGAGUAUCCUGAAAGUGCCACAGUGACGAA
#=GR bacteria.B.megaterium SS  ..<<<..<<<......<<<.....>>>>>...........

bacteria.B.megaterium	GCUUUGCUGGAAACAGCAAAGGUGGAACGCGGUAAACCCC
#=GR bacteria.B.megaterium SS  .>>>>>>>>....<<<<<<<<.........<<<..<<<<<

bacteria.B.megaterium	ACGAGCGAGAAACCCAAACAAUGGUAGGGGAACUGUCUCA
#=GR bacteria.B.megaterium SS  <<<<<<<<<...>>>...........<<<...>>>>>>>.

bacteria.B.megaterium	AAGGAAUCUAACGGAGAGACGGACGGUUACAUGCGUAAUC
#=GR bacteria.B.megaterium SS  ...............<<<<<<<>>>>>>>>....<<<<<<

bacteria.B.megaterium	GUAGAUAGAUGAUUACCGCCUGAGUACGAGAUUAAAAUCG
#=GR bacteria.B.megaterium SS  <<........<<<<<<<.>>>>>>>>>>>>>>....<<<<

bacteria.B.megaterium	UUUGCAGUACAAAGGUACAAAACAUGGCUUUACGAACGUU
#=GR bacteria.B.megaterium SS  <.....<<<<<<<<<.......aaaaaaaa.<.<<<<<<<

bacteria.B.megaterium	GUUGAAACA
#=GR bacteria.B.megaterium SS	<<<......

//
# STOCKHOLM 1.0

#=GS bacteria.B.stearothermophilus DE converted from brown dataset ct file

bacteria.B.stearothermophilus		GUUAAUCAUGCUCGGGUAAUCGCUGCGGCCGGUUUCGGC
#=GR bacteria.B.stearothermophilus SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>>>....<<<<

bacteria.B.stearothermophilus	CGUAGAGGAAAGUCCAUGCUCGCACGGUGCUGAGAUGCCC
#=GR bacteria.B.stearothermophilus SS  <<<<<....AAA.AAAAA>>>>>>>>>.>>......<<<<

bacteria.B.stearothermophilus	GUAGUGUUCGUGCCUAGCGAAUCCAUAAGCUAGGGCAGCC
#=GR bacteria.B.stearothermophilus SS  <<.....>>>>>>>>>>>..........<<<<<<>>>>>>

bacteria.B.stearothermophilus	UGGCUUCGGCUGGGCUGACGGCGGGGAAAGAACCUACGUC
#=GR bacteria.B.stearothermophilus SS  >>>>....<<<<<<<<<.<>>.>>>.....>>>>...>>>

bacteria.B.stearothermophilus	CGGCUGGGAUAUGGUUCGAUUACCCUGAAAGUGCCACAGU
#=GR bacteria.B.stearothermophilus SS  >.....<<<<..<<<<......<<<.....>>>>>.....

bacteria.B.stearothermophilus	GACGGAGCUCUAAGGGAAACCUUAGAGGUGGAACGCGGUA
#=GR bacteria.B.stearothermophilus SS  .......>>>>>>>>....<<<<<<<<.........<<<.

bacteria.B.stearothermophilus	AACCCCACGAGCGAGAAACCCAAAUGAUGGUAGGGGCACC
#=GR bacteria.B.stearothermophilus SS  .<<<<<<<<<<<<<<...>>>...........<<<...>>

bacteria.B.stearothermophilus	UUCCCGAAGGAAAUGAACGGAGGGAAGGACAGGCGGCGCA
#=GR bacteria.B.stearothermophilus SS  >>>>>................<<<<<<<>>>>>>>>>...

bacteria.B.stearothermophilus	UGCAGCCUGUAGAUAGAUGAUUACCGCCGGAGUACGAGGC
#=GR bacteria.B.stearothermophilus SS  .<<<<<<<<<........<<<<<<<.>>>>>>>>>>>>>>

bacteria.B.stearothermophilus	GCAAAGCCGCUUGCAGUACGAAGGUACAGAACAUGGCUUA
#=GR bacteria.B.stearothermophilus SS  .....<<<<<.....<<<<<<<<<.......aaaaaaaa.

bacteria.B.stearothermophilus	UAGAGCAUGAUUAACGUG
#=GR bacteria.B.stearothermophilus SS	<.<<<<<<<<<<......

//
# STOCKHOLM 1.0

#=GS bacteria.B.subtilis DE converted from brown dataset ct file

bacteria.B.subtilis		GUUCUUAACGUUCGGGUAAUCGCUGCAGAUCUUGAAUCU
#=GR bacteria.B.subtilis SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>>.....<<<<

bacteria.B.subtilis	GUAGAGGAAAGUCCAUGCUCGCACGGUGCUGAGAUGCCCG
#=GR bacteria.B.subtilis SS  <<<<....AAA.AAAAA>>>>>>>>>.>>......<<<<<

bacteria.B.subtilis	UAGUGUUCGUGCCUAGCGAAGUCAUAAGCUAGGGCAGUCU
#=GR bacteria.B.subtilis SS  <.....>>>>>>>>>>>..........<<<<<<>>>>>>>

bacteria.B.subtilis	UUAGAGGCUGACGGCAGGAAAAAAGCCUACGUCUUCGGAU
#=GR bacteria.B.subtilis SS  ....<<<<<<.<>>.>>>>.....>>>...>>>....<<<

bacteria.B.subtilis	AUGGCUGAGUAUCCUUGAAAGUGCCACAGUGACGAAGUCU
#=GR bacteria.B.subtilis SS  ..<<<......<<<<.....>>>>>............>>>

bacteria.B.subtilis	CACUAGAAAUGGUGAGAGUGGAACGCGGUAAACCCCUCGA
#=GR bacteria.B.subtilis SS  >>>>>....<<<<<<<<.........<<<..<<<<<<<<<

bacteria.B.subtilis	GCGAGAAACCCAAAUUUUGGUAGGGGAACCUUCUUAACGG
#=GR bacteria.B.subtilis SS  <<<<<...>>>...........<<<...>>>>>>>.....

bacteria.B.subtilis	AAUUCAACGGAGAGAAGGACAGAAUGCUUUCUGUAGAUAG
#=GR bacteria.B.subtilis SS  ...........<<<<<<<>>>>>>....<<<<<<......

bacteria.B.subtilis	AUGAUUGCCGCCUGAGUACGAGGUGAUGAGCCGUUUGCAG
#=GR bacteria.B.subtilis SS  ..<<<<<<<.>>>>>>>>>>>>>>.....<<<<<.....<

bacteria.B.subtilis	UACGAUGGAACAAAACAUGGCUUACAGAACGUUAGACCAC
#=GR bacteria.B.subtilis SS  <<<<<<<<.......aaaaaaaa.<.<<<<<<<<<<....

bacteria.B.subtilis	UU
#=GR bacteria.B.subtilis SS	..

//
# STOCKHOLM 1.0

#=GS bacteria.C.innocuum DE converted from brown dataset ct file

bacteria.C.innocuum		GAGGAAAGUCCGGGCUCGCACAUUCUGUGAUGAAUGUAG
#=GR bacteria.C.innocuum SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.C.innocuum	UGUUUGUGCUGGAUGAAACGAUAAAUCCAGGCAGCGUAAG
#=GR bacteria.C.innocuum SS  ...>>>>>>>>>>>..........<<<<<<>>>>>....<

bacteria.C.innocuum	CUGACGGCUGGAGAAGGCCUGUGGUGAAAGCUAUGGCGGA
#=GR bacteria.C.innocuum SS  <<<.<>>..>>>>...>>>...>>>....<<<..<<<...

bacteria.C.innocuum	CUCCUUUAAAAGUGCCACAGAAACGAGCUUUUCGGGAAAC
#=GR bacteria.C.innocuum SS  ...<<<<....>>>>>...........>>>>>>>>....<

bacteria.C.innocuum	CGGAAAGAUGGAACGGGUAAACCCCGCAAGCGAGAAACCC
#=GR bacteria.C.innocuum SS  <<<<<<<........<<<..<<<<<<<<<<<<<<...>>>

bacteria.C.innocuum	AAAUUUGGUAGGGGAAUCUAAUCACGGCAAAACGAAGCCA
#=GR bacteria.C.innocuum SS  ..........<<<...>>>>>>>.................

bacteria.C.innocuum	GUGAUCGGAACGUGGAAACACGUAGAUAAAUGACUGCCAC
#=GR bacteria.C.innocuum SS  ..<<<<<<<>>>>>....<<<<<................>

bacteria.C.innocuum	UUUCGCAAGAGAGUACAAAACACGGCUUA
#=GR bacteria.C.innocuum SS	>>>>....<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.E.faecalis DE converted from brown dataset ct file

bacteria.E.faecalis		GAGGAAAGUCCGGGCUCGCACAAGCUGAGAUGCUUGUAG
#=GR bacteria.E.faecalis SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.E.faecalis	UGUUCGUGCUUAGCGAAAUCAUAAGCUAAGGUACUCUUUU
#=GR bacteria.E.faecalis SS  ...>>>>>>>>>>>..........<<<<<<>>>>>>>...

bacteria.E.faecalis	AGAGUAACGGCAGGAAAAAUGACUAAGGUUUCGACUAUGU
#=GR bacteria.E.faecalis SS  <<<<<<.<>>.>>>>.....>>>...>>>....<<<..<<

bacteria.E.faecalis	CAAAGUAUCCUUGAAAGUGCCACAGUGACGAAGCGAUGUG
#=GR bacteria.E.faecalis SS  <......<<<<.....>>>>>............>>>>>>>

bacteria.E.faecalis	GGAAACUCCAUCGGUGGAACGCGGUAAACCCCUCGAGCGA
#=GR bacteria.E.faecalis SS  >....<<<<<<<<.........<<<..<<<<<<<<<<<<<

bacteria.E.faecalis	GCAACCCAAACAAUGGUAGGGGCGCUCUUCUAAAGGAAAU
#=GR bacteria.E.faecalis SS  <...>>>...........<<<...>>>>>>>.........

bacteria.E.faecalis	GAACGAGUAGAAGAGGCAGAGUUUACUCUGCAGAUAGAUG
#=GR bacteria.E.faecalis SS  ........<<<<<<<>>>>>>....<<<<<<.........

bacteria.E.faecalis	AUGACCGUCACCAAUUUUUCCUGAAGAAUUGGUGAUACAG
#=GR bacteria.E.faecalis SS  .......>>>>>>>>>>>>....<<<<<<<<<<<<.....

bacteria.E.faecalis	AACGCGGCUUAU
#=GR bacteria.E.faecalis SS	..<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.H.chlorum DE converted from brown dataset ct file

bacteria.H.chlorum		GAGGAAAGUCCGGGCUCGCACAUCCUGCGAUGGAUGUAG
#=GR bacteria.H.chlorum SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.H.chlorum	UGUUCGUGCCCGUUCGUAAUGGCGGGGCAGUCAGCUUUUU
#=GR bacteria.H.chlorum SS  ...>>>>>>>>>>>......<<<<<<>>>>>>>>>>....

bacteria.H.chlorum	AGCAGAUUGACGGCGGGGAAAGCAUCCUACAGCCAACUUG
#=GR bacteria.H.chlorum SS  <<<<<<<<<.<>>.>>>....>>>>......>>>>...<<

bacteria.H.chlorum	GCCAUGGUGCAAGUACCCUGAAAGUGGAUAGAGACGAGUC
#=GR bacteria.H.chlorum SS  <<....<<<<.....<<<.....>>>>...........>>

bacteria.H.chlorum	GUCGGGGAAACUCGACGAGUGGAACGACUAAACCCCACGA
#=GR bacteria.H.chlorum SS  >>>>>>....<<<<<<<<.........<<..<<<<<<<<<

bacteria.H.chlorum	GCGAGCAACUCAGUGUGUAGAGGCACCUGGCUGAGAGAAA
#=GR bacteria.H.chlorum SS  <<<<<...>>>........<<<...>>>>>>>........

bacteria.H.chlorum	UGAAUCAAUGCCGGGACGAUCGACAUAUGAUCGUAGAAAA
#=GR bacteria.H.chlorum SS  ........<<<<<<<>>>>>>>.....<<<<<<<......

bacteria.H.chlorum	AUGAUUGCCCCUUCUGUGGGAGGCUGGGAAGCCUAGAACC
#=GR bacteria.H.chlorum SS  ..........>>>>>>>>>>>>>>>....<<<<..<<.<<

bacteria.H.chlorum	ACAUUGGAACAGAAUCCGGCUUA
#=GR bacteria.H.chlorum SS	<<<<<<<.......<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.L.acidophilus DE converted from brown dataset ct file

bacteria.L.acidophilus		GAGGAAAGUCCGGGCCCGCGCAAGCUGAGAUGCUUGUAG
#=GR bacteria.L.acidophilus SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.L.acidophilus	UGUUCGUGCUAAGCCCAAUAAGCUUAGGGGCCGUGUAAAC
#=GR bacteria.L.acidophilus SS  ...>>>>>>>>>>>.......<<<<<<>>>>>>>....<<

bacteria.L.acidophilus	GGCUACGGCGGCCAAACGCGCUAAGGCGUCAGCUAUGCGC
#=GR bacteria.L.acidophilus SS  <<<<.<>>.>>>>....>>>>...>>>....<<<..<<<<

bacteria.L.acidophilus	UAGUAGGUCUGAAAAGUGCCACAGUGACGAAACGAUCAGG
#=GR bacteria.L.acidophilus SS  ......<<<<.....>>>>>............>>>>>>>>

bacteria.L.acidophilus	GAAACCUGAGCGGUGGAACGGGUAAACCCCGCGAGCGAGU
#=GR bacteria.L.acidophilus SS  ....<<<<<<<<........<<<..<<<<<<<<<<<<<<.

bacteria.L.acidophilus	AACCCAAACUUUUGGUAGGGGCGUUUUGCCAAGCAAAUUG
#=GR bacteria.L.acidophilus SS  ..>>>............<<<...>>>>>>>..........

bacteria.L.acidophilus	AAGCGACGGCAAUACAGCGGUAACGCUGAGAUAGAUGAUG
#=GR bacteria.L.acidophilus SS  .......<<<<<<<>>>>>....<<<<<............

bacteria.L.acidophilus	ACUGAAGGAGCUUGUGCCUGAACAAGUUCUGGAACAACAC
#=GR bacteria.L.acidophilus SS  ......>>>>>>>>>......<<<<<<<<<.........<

bacteria.L.acidophilus	ACGGCUUAU
#=GR bacteria.L.acidophilus SS	<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.M.capricolum DE converted from brown dataset ct file

bacteria.M.capricolum		GAGAUUUUAUUGGUCAAUCGCUGUAUUUGAAAAAGAAUA
#=GR bacteria.M.capricolum SS  .>>>>>>>>>>>>>>>>>>.>>>>>>>>......<<<<<

bacteria.M.capricolum	UAGAGGAAACUCCACGCUUACACAAUCUGUGAUGAUUGUA
#=GR bacteria.M.capricolum SS  <<<....AAA.AAAAA>>>>>>>>>>>......<<<<<<.

bacteria.M.capricolum	GUGUUUAUGCUAAAUGAAAAAAUAAAUUUAGGCAGUAAUU
#=GR bacteria.M.capricolum SS  ....>>>>>>>>>>>..........<<<<<<>>>>>>>..

bacteria.M.capricolum	AAUUACUGACGGCAUAACUAACCUAAGGCUUUGCUAUGGU
#=GR bacteria.M.capricolum SS  ..<<<<<<.<>>.>>>>...>>>...>>>...<<<..<<<

bacteria.M.capricolum	GAUGUUAUAAAGUGCCACAGAGACGAAUAAAGAGAAAUCU
#=GR bacteria.M.capricolum SS  ....<<<<...>>>>>...........>>>>>.....<<<

bacteria.M.capricolum	UGAAAUGGAACGCGGUAAACCCCAUAAGUAAGAAACUCAA
#=GR bacteria.M.capricolum SS  <<...........<<<..<<<<<<<<<<<<<<...>>>..

bacteria.M.capricolum	AUUUUGGUAGAGGAAUCUGAUUAAGAAAAUAAGAAUCAAA
#=GR bacteria.M.capricolum SS  .........<<<...>>>>>>>.................<

bacteria.M.capricolum	AUCAGAAGUUAUUAUUAACUAGAUAGAUGAUUGACGCUGA
#=GR bacteria.M.capricolum SS  <<<<<<>>>>>....<<<<<........<<<<<<<.>>..

bacteria.M.capricolum	AAAGUACAAAACGUGGGUUAUAAAUAAAAUCUCAUCA
#=GR bacteria.M.capricolum SS	..<<.......aaaaaaaa.<.<<<<<<<<<<.....

//
# STOCKHOLM 1.0

#=GS bacteria.M.fermentans DE converted from brown dataset ct file

bacteria.M.fermentans		AGCAUUGGCUAACAGCUGCUUGAAAGAGUAGAGGAAAGU
#=GR bacteria.M.fermentans SS  >>>>>>>>>>>>>>.>>>>>>....<<<<<<....AAA.

bacteria.M.fermentans	CCACGCUAGCACAACCUGCGAUGGUUGUAGUGAUCAUGCU
#=GR bacteria.M.fermentans SS  AAAAA>>>>>>>>>>>......<<<<<<.....>>>>>>>

bacteria.M.fermentans	AGGCCCAAUAAGCCUAGGCUUAGACGACUAGUGCCACAGA
#=GR bacteria.M.fermentans SS  >>>>.......<<<<<<>>...<.<>>...>>>>>.....

bacteria.M.fermentans	GACGAGAAUUGUGAAACGCGGUAAACUCCAUGAGUUAGAA
#=GR bacteria.M.fermentans SS  ...................<<<..<<<<<<<<<<<<<<..

bacteria.M.fermentans	ACCCAAAUAUUGGUAGGGGAACUUUUCAACGGAAAUUGAA
#=GR bacteria.M.fermentans SS  .>>>...........<<<...>>>>>>>............

bacteria.M.fermentans	CCAAAGAAAAGAGUUGAUUAAUCAACUAGAUAAAUUGUUA
#=GR bacteria.M.fermentans SS  ....<<<<<<<>>>>>>....<<<<<<........<<<<<

bacteria.M.fermentans	GCACCUGAGAGGGUACAAAACGUGGCUUAUAAAUGCUAAA
#=GR bacteria.M.fermentans SS  <<>>>>....<<<<......aaaaaaaa.<<.<<<<<>>>

bacteria.M.fermentans	ACACUUGCGCGAGCAGGCGUUUU
#=GR bacteria.M.fermentans SS	>>>>>>>>....<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.M.flocculare DE converted from brown dataset ct file

bacteria.M.flocculare		GCACAAGUCAAUCGCAGGUAUAAUCAAAAUAUUAUUUUA
#=GR bacteria.M.flocculare SS  >>>>>>AAAAAAA.>>>>>>>>>>>>>>>>>>>>>>>..

bacteria.M.flocculare	UAAAUAUAAAUUAUAUUUUGAUUAAUAUUUGAGGAAAGUC
#=GR bacteria.M.flocculare SS  .......<<<<<<<<<<<<<<<<.<<<<<<<....>>>.>

bacteria.M.flocculare	CGCGCUAGCACUACCUGUGAUGGUAGUAGUGUUCAUGUUG
#=GR bacteria.M.flocculare SS  >>>>>>>>>>>>>>>......<<<<<<.....>>>>>>>>

bacteria.M.flocculare	GGUCUAAUAAACCCAAGCUUAGACGACAAGUGCCACAGAG
#=GR bacteria.M.flocculare SS  >>>.......<<<<<<>>...<.<>>...>>>>>......

bacteria.M.flocculare	ACGAGCUUAUUUAUUAAAUUCUUCUUUUUCUAUAUUGAGA
#=GR bacteria.M.flocculare SS  .....>>>>>>>>>>>>>>>>>>>..>>>>......<<<.

bacteria.M.flocculare	AUUACAAUUUUUUUCUUAAUAAAUAAGGUGAAACGCGGUA
#=GR bacteria.M.flocculare SS  <<<<<<<.......<<<<<<<<<<<<<.........<<<.

bacteria.M.flocculare	AACUCCAUGAGCUAGAAACCUAAAUUUUGGUAAGGGAGCC
#=GR bacteria.M.flocculare SS  .<<<<<<<<<<<<<<...>>>...........<<<...>>

bacteria.M.flocculare	CAAUUUGAAGAAAAAAAACUUCGAUUGGGAAGUUUUUUGA
#=GR bacteria.M.flocculare SS  >>>>>.................<<<<<<<>>>>>>>>>>>

bacteria.M.flocculare	UAAGGUUAUUAUUAAAAGAAAAACUUAGAUAAAUGAUUGA
#=GR bacteria.M.flocculare SS  >>>.....<<<<....<<<<<<<<<<........aaaaaa

bacteria.M.flocculare	CUGAUACAGAACGCGGCUUAUUAGUGCAAAAACAGCGUAA
#=GR bacteria.M.flocculare SS  a..........<<<<<<<<.<.<<<<<>>>>>>>>>>>..

bacteria.M.flocculare	AAACGCUGUUUUU
#=GR bacteria.M.flocculare SS	..<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.M.genitalium DE converted from brown dataset ct file

bacteria.M.genitalium		GCUGUCGGUUAGUUGCUGCUUUAAAGAUAUAUUUAAAGU
#=GR bacteria.M.genitalium SS  >>>>>>>BBBBBB>.>>>>>>>>>>......<<<<<<<<

bacteria.M.genitalium	AGAGGAAAGUCCAUGCUUGCACUUGCUGGAAUGCAAGUAG
#=GR bacteria.M.genitalium SS  <<....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.M.genitalium	UGUUUGUGUAAAUCAAAGCGAUAAGAUUUAGGAUGUGAUA
#=GR bacteria.M.genitalium SS  ...>>>>>>>>>>>..........<<<<<<>>>>>.AAAA

bacteria.M.genitalium	GCCAUAACGACAUAACUAGUCUAAGGUUAAUACUAUGAUG
#=GR bacteria.M.genitalium SS  AA<<<<.<>>>>>>...>>>>...>>>....<<<..<<<<

bacteria.M.genitalium	AUGUUUUGAAAGUGCCACAGAGACGAGGCUUGGUGAAAAC
#=GR bacteria.M.genitalium SS  ....<<<<...>>>>>...........>>>>>>>....<<

bacteria.M.genitalium	CAGGUAUGAAACGCGGUAAACUCCACAAGCAAGAAACCUA
#=GR bacteria.M.genitalium SS  <<<<<.........<<<..<<<<<<<<<<<<<<...>>>.

bacteria.M.genitalium	AAUUUUGGUAAGGGAAUGUUGCUUUAAGAACAAAUAAUUA
#=GR bacteria.M.genitalium SS  ..........<<<...>>>>>>>.................

bacteria.M.genitalium	AAGUAAUGACAGCAAUUGCUGUAGAUAAAUAACUGACUUU
#=GR bacteria.M.genitalium SS  .<<<<<<<>>>>>....<<<<<........<bbbbbb...

bacteria.M.genitalium	AAAACAGAACAUGGCUUAUUGACAGCAUGCUAUCUAAAAA
#=GR bacteria.M.genitalium SS  .........<<<<<<<<.<.<<<<<<..aaaaaa>>>>>>

bacteria.M.genitalium	AAGGAUCAUGAUGAUCCUUUUUUUA
#=GR bacteria.M.genitalium SS	>>>>>>>>...<<<<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.M.hyopneumoniae DE converted from brown dataset ct file

bacteria.M.hyopneumoniae		UGCACAAGUCAAUUGCAGAUAUAAUUAAAUAUAAUAAUU
#=GR bacteria.M.hyopneumoniae SS  >>>>>>>AAAAAAA.>>>>>>>>>>>>>>>>>>>>>>>.

bacteria.M.hyopneumoniae	UUUUUAUAAUUGUUAUAUUUAACAAAUUUAUAUUUGAGGA
#=GR bacteria.M.hyopneumoniae SS  ........<<<<<<<<<<<<<<....<<.<<<<<<<....

bacteria.M.hyopneumoniae	AAGUCCGCGCUAGCACUACCUGAGAUGGUAGUAGUGUUCA
#=GR bacteria.M.hyopneumoniae SS  >>>.>>>>>>>>>>>>>>>>......<<<<<<.....>>>

bacteria.M.hyopneumoniae	UGUUGGAUCUAAUAAAUCCAAGCUUUAGACGACCAGUGCC
#=GR bacteria.M.hyopneumoniae SS  >>>>>>>>.......<<<<<<>>....<.<>>...>>>>>

bacteria.M.hyopneumoniae	ACAGAGACGAGUUUAUUUAUUAAUUUGUUUAUAUUAAAAA
#=GR bacteria.M.hyopneumoniae SS  ...........>>>>>>>>>>>>>>>>>>>..>>>>....

bacteria.M.hyopneumoniae	AUAGUUUAGAAUUUUUAAAUUAAUAAAUAAGGUGAAACGC
#=GR bacteria.M.hyopneumoniae SS  .<<<<<<<<<<.......<<<<<<<<<<<<<.........

bacteria.M.hyopneumoniae	GGUAAACUCCAUGAGCUAGAAACCUAAAUUUUGGUAAGGG
#=GR bacteria.M.hyopneumoniae SS  <<<..<<<<<<<<<<<<<<...>>>...........<<<.

bacteria.M.hyopneumoniae	AGCCCAAUUUCGGGAAACAAACUUUAAUUGGGAAGUUCUA
#=GR bacteria.M.hyopneumoniae SS  ..>>>>>>>................<<<<<<<>>>>>>>.

bacteria.M.hyopneumoniae	UUAUAAUAUUUUUAUAAAGAACUUAGAUAAAUGAUUGAUU
#=GR bacteria.M.hyopneumoniae SS  >>>>>>.....<<<<<<<<<<<<<........aaaaaaa.

bacteria.M.hyopneumoniae	AAUACAGAACGCGGCUUAUUAGUGCAAAAAAAACAGCGAA
#=GR bacteria.M.hyopneumoniae SS  .........<<<<<<<<.<.<<<<<<>>>>>>.>>>>>..

bacteria.M.hyopneumoniae	UCUGAACGCUGUUUUUU
#=GR bacteria.M.hyopneumoniae SS	......<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.M.pneumoniae DE converted from brown dataset ct file

bacteria.M.pneumoniae		CGCUGUCGGUCAGUUGCUGCUCAAUGAGUAGAGGAAAGU
#=GR bacteria.M.pneumoniae SS  >>>>>>>>BBBBBB>.>>>>>>...<<<<<<....>>>.

bacteria.M.pneumoniae	CCAUGCUUGCACUUGCUGGAACGCAAGUAGUGUUUGUGUA
#=GR bacteria.M.pneumoniae SS  >>>>>>>>>>>>>>>>......<<<<<<.....>>>>>>>

bacteria.M.pneumoniae	AAUUGAACAAAUAGAUUUAGGACGCUAAUAGACGUCACGA
#=GR bacteria.M.pneumoniae SS  >>>>.........<<<<<<>>>>>.AAAAAA.<<<<.<>>

bacteria.M.pneumoniae	CUGGACUAGUCUAAGGUCUUUGACUAUGAUGAUGUCCGUA
#=GR bacteria.M.pneumoniae SS  .>>>>...>>>...>>>>...<<<<..<<<....<<<<..

bacteria.M.pneumoniae	AAGUACCACAGAGACGAGCUUAGUGAAAACUAAGUAUGAA
#=GR bacteria.M.pneumoniae SS  ..>>>>>..........>>>>>>>....<<<<<<<.....

bacteria.M.pneumoniae	ACGCGGUAAACUCCACAAGCAAGAAACCUAAAUUUUGGUA
#=GR bacteria.M.pneumoniae SS  ....<<<..<<<<<<<<<<<<<<...>>>...........

bacteria.M.pneumoniae	AGGGAAUGUUACUUUAAGAAAAAUAAUUAAAGUAAUGACA
#=GR bacteria.M.pneumoniae SS  <<<...>>>>>>>.................<<<<<<<>>>

bacteria.M.pneumoniae	GGAUUACUGUACAUAAAUAACUGACUUUAAAACAGAACAU
#=GR bacteria.M.pneumoniae SS  >.....<<<<........<bbbbbb............<<<

bacteria.M.pneumoniae	GGCUUAUUGGCAGCGUUCUAUUGAAAAAGGAUCUGUUUGG
#=GR bacteria.M.pneumoniae SS  <<<<<.<.<<<<<<<..aaaaaa>>>>>>>>>>>....<<

bacteria.M.pneumoniae	AUCCUUUUUU
#=GR bacteria.M.pneumoniae SS	<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.S.aureus-2 DE converted from brown dataset ct file

bacteria.S.aureus-2		UGAUAUUUCGGGUAAUCGCUAUAUUAUAUAGAGGAAAGU
#=GR bacteria.S.aureus-2 SS  >>>>>>>>>>>>>>>>>.>>>>>...<<<<<....AAA.

bacteria.S.aureus-2	CCAUGCUCACACAGUCUGAGAUGAUUGUAGUGUUCGUGCU
#=GR bacteria.S.aureus-2 SS  AAAAA>>>>>>>>>>>......<<<<<<.....>>>>>>>

bacteria.S.aureus-2	UGAUGAAACAAUAAAUCAAGGCAUUAAUUUGACGGCAAUG
#=GR bacteria.S.aureus-2 SS  >>>>..........<<<<<<>>>......<<.<>>.>>>>

bacteria.S.aureus-2	AAAUAUCCUAAGUCUUUCGAUAUGGAUAGAGUAAUUUGAA
#=GR bacteria.S.aureus-2 SS  .....>>>...>>>....<<<..<<<......<<<<....

bacteria.S.aureus-2	AGUGCCACAGUGACGUAGCUUUUAUAGAAAUAUAAAAGGU
#=GR bacteria.S.aureus-2 SS  .>>>>>............>>>>>>>>....<<<<<<<<..

bacteria.S.aureus-2	GGAACGCGGUAAACCCCUCGAGUGAGCAAUCCAAAUUUGG
#=GR bacteria.S.aureus-2 SS  .......<<<..<<<<<<<<<<<<<<...>>>........

bacteria.S.aureus-2	UAGGAGCACUUGUUUAACGGAAUUCAACGUAUAAACGAGA
#=GR bacteria.S.aureus-2 SS  ..<<<...>>>>>>>.................<<<<<<<>

bacteria.S.aureus-2	CACACUUCGCGAAAUGAAGUGGUGUAGACAGAUGGUUAUC
#=GR bacteria.S.aureus-2 SS  >>>>>>>>>.....<<<<<<<.<<<........<<<<<<<

bacteria.S.aureus-2	ACCUGAGUACCAGUGUGACUAGUGCACGUGAUGAGUACGA
#=GR bacteria.S.aureus-2 SS  .>>>>>>>>>>>>>>>>.....<<<<<<<.....<<<<<<

bacteria.S.aureus-2	UGGAACAGAACAUGGCUUAUAGAAAUAUCACUACUAGU
#=GR bacteria.S.aureus-2 SS	<<<.......aaaaaaaa.<.<<<<<<<<<........

//
# STOCKHOLM 1.0

#=GS bacteria.S.bovis DE converted from brown dataset ct file

bacteria.S.bovis		GAGGAAAGUCCGGGCUAGCACUGGCUGUGAUGCCGGUAG
#=GR bacteria.S.bovis SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.S.bovis	UGUUUGUGCUAGGUGAAUCAAUAAGCCUAGGGACAUCUUU
#=GR bacteria.S.bovis SS  ...>>>>>>>>>>>..........<<<<<<>>>>>>>...

bacteria.S.bovis	UUGAUGUUACGGCGGGCAAAAAGGCUAAGUCUUUACGGAU
#=GR bacteria.S.bovis SS  ..<<<<<<.<>>.>>>>.....>>>...>>>....<<<..

bacteria.S.bovis	AUGUCUGAAUAGCCCUGAAAGUGCCACAGUGACGUAGUUC
#=GR bacteria.S.bovis SS  ..<<<......<<<<.....>>>>>............>>>

bacteria.S.bovis	UUGGGGAAACCUAAGAAGUGGAACGCGGUAAACCCCUCAA
#=GR bacteria.S.bovis SS  >>>>>....<<<<<<<<.........<<<..<<<<<<<<<

bacteria.S.bovis	GCUAGCAACCCAAACUUUGGUAGGGGCAUGGGAUAGUUGG
#=GR bacteria.S.bovis SS  <<<<<...>>>...........<<<...>>>>>>>.....

bacteria.S.bovis	AAUCCGAACAAUCUAUCCUGACUGGAAACAGUAGACAGAU
#=GR bacteria.S.bovis SS  .............<<<<<<<>>>>....<<<<........

bacteria.S.bovis	GAUUAUCGAAGGAGAUAAGACCUAGUUAUCUCUGGAACAA
#=GR bacteria.S.bovis SS  ..........>>>>>>>>>.....<<<<<<<<<.......

bacteria.S.bovis	AACACGGCUUAU
#=GR bacteria.S.bovis SS	..<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.S.faciem DE converted from brown dataset ct file

bacteria.S.faciem		GAGGAAAGUCCGGGCUCGCACAGGCUGUGAUGCCUGUAG
#=GR bacteria.S.faciem SS  .....>>>.>>>>>>>>>>>>>>>>......<<<<<<..

bacteria.S.faciem	UGUUCGUGCUUAGCGAAACAAUAAGCUAAGGUGCUCUAUU
#=GR bacteria.S.faciem SS  ...>>>>>>>>>>>..........<<<<<<>>>>>>>...

bacteria.S.faciem	AGAGUAACGGCAGGAAAACAAGCUAAGGUUUUUAACUAUG
#=GR bacteria.S.faciem SS  <<<<<<.<>>.>>>>.....>>>...>>>.....<<<..<

bacteria.S.faciem	CUUAAGUAUCCUUGAAAGUGCCACAGUGACGAAGCGGAUA
#=GR bacteria.S.faciem SS  <<......<<<<.....>>>>>............>>>>>>

bacteria.S.faciem	GGGAAACUUAUUCGGUGGAACGCGGUAAACCCCUCGAGCG
#=GR bacteria.S.faciem SS  >>....<<<<<<<<.........<<<..<<<<<<<<<<<<

bacteria.S.faciem	AGCAACCCAAACAAUGGUAGGGGCGCUUUUUGUUGGGAAU
#=GR bacteria.S.faciem SS  <<...>>>...........<<<...>>>>>>>........

bacteria.S.faciem	UAAGAACGAGACAAAAAGGCAGGUUAACUGCAGAUAGAUG
#=GR bacteria.S.faciem SS  ...........<<<<<<<>>>>.....<<<<.........

bacteria.S.faciem	GUUACCACAUUGCUUUUUCUCCCUGGAAAGUAGUGUACAG
#=GR bacteria.S.faciem SS  ......>>>>>>>>>>>>......<<<<<<<<<<<<....

bacteria.S.faciem	AACACGGCUUAU
#=GR bacteria.S.faciem SS	..<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS bacteria.S.pneumoniae DE converted from brown dataset ct file

bacteria.S.pneumoniae		AUGUGCAAUUUUUGGAUAAUCGCGUGAGGAGAAUUGUUU
#=GR bacteria.S.pneumoniae SS  ...>>>>>>>>>>>>>>>>>>.>>>>>>>>>.....<<<

bacteria.S.pneumoniae	CUCAUGAGGAAAGUCCAUGCUAGCACAGGCUGUGAUGCCU
#=GR bacteria.S.pneumoniae SS  <<<<<<....AAA.AAAAA>>>>>>>>>>>......<<<<

bacteria.S.pneumoniae	GUAGUGUUUGUGCUAGGCGAAACCAUAAGCCUAGGGACGA
#=GR bacteria.S.pneumoniae SS  <<.....>>>>>>>>>>>..........<<<<<<>>>>>>

bacteria.S.pneumoniae	GAAAUCGUUACGGCAGUUGAAAUGGCUAAGUCCUUGGAUA
#=GR bacteria.S.pneumoniae SS  ....<<<<<.<>>.>>>>.....>>>...>>>....<<<.

bacteria.S.pneumoniae	GGCCAGAGUAGGCUUGAAAGUGCCACAGUGACGGAGUCUU
#=GR bacteria.S.pneumoniae SS  .<<<......<<<<.....>>>>>............>>>>

bacteria.S.pneumoniae	UCUGGAAACAGAGAGAGUGGAACGCGGUAAACCCCUCAAG
#=GR bacteria.S.pneumoniae SS  >>>>....<<<<<<<<.........<<<..<<<<<<<<<<

bacteria.S.pneumoniae	CUAGCAACCCAAAUUUUGGUCGGGGCAUGGAGUACGCGGA
#=GR bacteria.S.pneumoniae SS  <<<<...>>>...........<<<...>>>>>>>......

bacteria.S.pneumoniae	AACGAACGUAGUAUUCUGACUGCUAUCAGCUAGAGCUGUU
#=GR bacteria.S.pneumoniae SS  ...........<<<<<<<>>>>>>>>>>>>....<<<<<<

bacteria.S.pneumoniae	AGUGGUAGACAGAUGAUUAUCGAAGGAAGUGGUCCUAGUC
#=GR bacteria.S.pneumoniae SS  <<<<<<........<<<<<<<...>>>>>>>>>....<<<

bacteria.S.pneumoniae	ACUUCUGGAACAAAACAUGGCUUAUAGAAAAUUGCAUAUA
#=GR bacteria.S.pneumoniae SS  <<<<<<.........aaaaaaaa.<.<<<<<<<<<<....

bacteria.S.pneumoniae	GG
#=GR bacteria.S.pneumoniae SS	..

//
# STOCKHOLM 1.0

#=GS bacteria.U.urealyticum DE converted from brown dataset ct file

bacteria.U.urealyticum		GUGUAAAAAGCUAAUUGCUGCAUUUUUUAAAAAAUGUAG
#=GR bacteria.U.urealyticum SS  >>>>>>>>>>>>>>>>.>>>>>>>>.....<.<<<<<<<

bacteria.U.urealyticum	AGGAAAGUCCGUGCUCACACUAACUGUGAUGUUAGUAGUG
#=GR bacteria.U.urealyticum SS  ....AAA.AAAAA>>>>>>>>>>>......<<<<<<....

bacteria.U.urealyticum	UUUGUGUAUGUAUAAUUAAUAAGGCAUAGCAUAGGCAUAU
#=GR bacteria.U.urealyticum SS  .>>>>>>>>>>>..........<<<<<<>>>>>....<<<

bacteria.U.urealyticum	GACGGCAAAUUUUUAAGCUAAGUGAUUUAAAUUAUAUGUU
#=GR bacteria.U.urealyticum SS  <.<>>.>>>>....>>>>..>>>>.....<<<<....<<<

bacteria.U.urealyticum	UAAAAAUUUAUAAAAGUGCCACAGAGACGAUUAAUCAAGA
#=GR bacteria.U.urealyticum SS  <....<<<<......>>>>>..........>>>>>>>>..

bacteria.U.urealyticum	AAUUGAUGAGAUGAAACGUUGGUAAACCCCACAAGUGAGA
#=GR bacteria.U.urealyticum SS  ..<<<<<<<<..........<<<..<<<<<<<<<<<<<<.

bacteria.U.urealyticum	AACCUAAAUUUCGGUAAGGGAAUCUAAUUUAGUAAAUUAA
#=GR bacteria.U.urealyticum SS  ..>>>...........<<<...>>>>>>>...........

bacteria.U.urealyticum	GAAAUUAAAUUAGGAUAGAAUUGUUUACAAUUCUAUAGAU
#=GR bacteria.U.urealyticum SS  .......<<<<<<<>>>>>>>>>....<<<<<<<<<....

bacteria.U.urealyticum	AAAUAAUUAGCGCUACAUUUUUGUAGAACAGAACACGGCU
#=GR bacteria.U.urealyticum SS  ....<<<<<<<.>>>>>....<<<<<.......aaaaaaa

bacteria.U.urealyticum	UAUUUUUACAU
#=GR bacteria.U.urealyticum SS	a.<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS bacteria.SMB-B3 DE converted from brown dataset ct file

bacteria.SMB-B3		GAGGAAAGUCCGGGCAGCACAGAGCAAGGGUGCCUGGUG
#=GR bacteria.SMB-B3 SS  .....>>>.>>>>>>>>>...AAAA..>>>.>>>>>>>.

bacteria.SMB-B3	AAAGCCAGGGAGGCGCUAUCUGGCGUCGACAGUCCAGACC
#=GR bacteria.SMB-B3 SS  ...<<<<<<>>>>>>>>....<<<<<<<.<>>........

bacteria.SMB-B3	GGCACACUCCUCAGGAGUGUGAGAGCAACAGAGACCAAUC
#=GR bacteria.SMB-B3 SS  ..>>>>>>>>...<<<<<<<<.>>>>>............>

bacteria.SMB-B3	UAUUGUGCCAAGGCGCAAUAGCUGAAAAGGGCAAUCCUCC
#=GR bacteria.SMB-B3 SS  >>>>>>>>....<<<<<<<<<........<<<..<<<<<<

bacteria.SMB-B3	UCGCUGCAAUCUCCGAUCCGGCCGUUACCAGGUUGCUCGC
#=GR bacteria.SMB-B3 SS  <<<<<<...>>>>....>>>>>>.......>>>.aaaa<<

bacteria.SMB-B3	CAAGGCCGAAAGACGAGAGCCGUCGGUGCUCGCAUCGACC
#=GR bacteria.SMB-B3 SS  <..<<<<<<.....<<<<...>>>>>>>....<<<<<<<>

bacteria.SMB-B3	GGUCUAUUCGACCGAGAAAGAUGAUCGCCAGGAACAGAAC
#=GR bacteria.SMB-B3 SS  >>>>.....<<<<<.........................<

bacteria.SMB-B3	GCGGCUUA
#=GR bacteria.SMB-B3 SS	<<<<<<<.

//
# STOCKHOLM 1.0

#=GS bacteria.T.roseum DE converted from brown dataset ct file

bacteria.T.roseum		AUACCGGGCAGGGCGGUCGCUGGUGCGGUAAGCACCAGA
#=GR bacteria.T.roseum SS  >>>>>>>>>>>BBBBBBB.>>>>>>>.....<<<<<<<.

bacteria.T.roseum	GGAAAGUCCGAGCUGCACAGAGCGGGGUGCCUGGGGUCAA
#=GR bacteria.T.roseum SS  ...>>>.>>>>>>>>>...AAAA.>>>.>>>>>>>.....

bacteria.T.roseum	CCCAGGGCAGCGGAGACCGGCGCCGCUGACAGUCCAGAUC
#=GR bacteria.T.roseum SS  <<<<<<>>>>>>>.........<<<<<<.<>>........

bacteria.T.roseum	GGCGCGCUGGAUAACCCAGCGUGAGAGCAACAGAGACGAU
#=GR bacteria.T.roseum SS  ..>>>>>>>>.....<<<<<<<<.>>>>>...........

bacteria.T.roseum	GACCGGGCUCGUCCCGGGGUGAAAAGGGCAAUCCUCCCUG
#=GR bacteria.T.roseum SS  ..>>>>>.....<<<<<.........<<<..<<<<<<<<<

bacteria.T.roseum	CAGCAAUCUCCGAGCGGGCCGCUAUCAGGUUGCUCGCCGA
#=GR bacteria.T.roseum SS  <<<...>>>>....>>>>>>.......>>>.aaaa<<<..

bacteria.T.roseum	GGCCCGAGGAUGAGAGCAGUCGCGGAGGUGACGAAGCGAC
#=GR bacteria.T.roseum SS  <<<<<<.....<<<<...>>>>>>>>>....<<<<<<<<<

bacteria.T.roseum	CGUCCGUGCAAGACACGGGCGAGAGAGAUGACCGCCUAGA
#=GR bacteria.T.roseum SS  >>>>>>>>.....<<<<<<<<........bbbbbbb....

bacteria.T.roseum	ACAGAACUCGGCUUACUCGCUCGGUAUCGCU
#=GR bacteria.T.roseum SS	......<<<<<<<<.<.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS eukarya.A.obstetricans DE converted from brown dataset ct file

eukarya.A.obstetricans		CGGAAGGAAGCUCACUGUAGAGGUCAUGUACGGAGUGCG
#=GR eukarya.A.obstetricans SS  >>>>>>>...>>>>.>>..>>>>.........>>>>>>>

eukarya.A.obstetricans	UCACAACUGUGAUGUCACUCCAUUAAUUCCUCCGGGAAGG
#=GR eukarya.A.obstetricans SS  >>>......<<<<<.<<<<<........<<<<<<...AAA

eukarya.A.obstetricans	UCUGAGACAGGAGCCAUUAGCUGCCCUCACAGGGCGUCAC
#=GR eukarya.A.obstetricans SS  .AAAAA.....>>>>......>>>>>.....<<<<<>>>>

eukarya.A.obstetricans	CUGAGUGGGUGAGUGAGUCCCCAGCAACCCCACGCUGGAG
#=GR eukarya.A.obstetricans SS  >>....<<<<<<>>>>>>>...........>>>.......

eukarya.A.obstetricans	UGGACCGGCUCGACACGUGGAGUGGGCUCUGCAGGAGAGG
#=GR eukarya.A.obstetricans SS  ........................................

eukarya.A.obstetricans	CGGGGUGGACUGCAGUGAGAGGGUGGAGUUACAGAUUGAC
#=GR eukarya.A.obstetricans SS  ........................................

eukarya.A.obstetricans	ACUCCCACCCAACUCAGUGAGGCUCCGCCCAGCUGAUGCC
#=GR eukarya.A.obstetricans SS  ........................................

eukarya.A.obstetricans	GCCCCCUCCCCGGGCCUUGGAAGUGGCUCACGGCUGGCUG
#=GR eukarya.A.obstetricans SS  ..............<<<.......<<<<<<<<<<<.....

eukarya.A.obstetricans	UGUUAGUCCAAUGGCUGAGGUGGAGCAGCUGCACGGGAUG
#=GR eukarya.A.obstetricans SS  ...............<<<<>>>>>>>>.>>>>>>>...<<

eukarya.A.obstetricans	UGUGCGCGCCCCAUAACCCAAUUCAGACCACUCUCCGGAA
#=GR eukarya.A.obstetricans SS  <<.<<<<<<<<<<<........aaaaaaaa....<<<<<<

eukarya.A.obstetricans	UUCCG
#=GR eukarya.A.obstetricans SS	<....

//
# STOCKHOLM 1.0

#=GS eukarya.A.telluris DE converted from brown dataset ct file

eukarya.A.telluris		AAACGCAGAGGACCAGAACUUUGGGACGGGAGGCGGGGG
#=GR eukarya.A.telluris SS  ........>>>>>>.........................

eukarya.A.telluris	UUUUGUUCGCAGGCUCCUUCUUCCCGCUCCUGGUUCUACG
#=GR eukarya.A.telluris SS  ........................................

eukarya.A.telluris	CGGCGUGCGCUGUACCACCAUCGGUGGUUAUGGCGCUUAC
#=GR eukarya.A.telluris SS  .......................................>

eukarya.A.telluris	CCCGUGAGGGGGGCUUGGGGAACCGAGUCUAGCGUUGUUA
#=GR eukarya.A.telluris SS  >>>....<<<<>>>>>>>....<<<<<<<...>>>>>>>.

eukarya.A.telluris	UAAGAAAUCAAUCUUUUGGAUCCAGCCAGGGUCCUCUAGC
#=GR eukarya.A.telluris SS  ........................................

eukarya.A.telluris	AGAAAAGGGGGAUGGGGCUCUCUUGGGCUCUCCCCUCCAC
#=GR eukarya.A.telluris SS  .......>>>>..>>>>>>>....<<<<<<<.<<<<....

eukarya.A.telluris	GCCUGCGGGAUUCUGAUGGGAAUGACAACGGUCGGUCCAU
#=GR eukarya.A.telluris SS  .......................<<<<<<<...<<<<<<.

eukarya.A.telluris	UUGACUUUAUCAUUACGAUGGUUCUAGUCGUGUUAUGGUA
#=GR eukarya.A.telluris SS  ..>>>>>>>>>>>>>>.>>>>>....<<<<<<<<<<<<<<

eukarya.A.telluris	AAGGUCUGUUGAGUGCAAUUGUAGAGCAAAUUGAUUCAAU
#=GR eukarya.A.telluris SS  <<.<<<....................>>>>>>>...<<<<

eukarya.A.telluris	UUGAA
#=GR eukarya.A.telluris SS	<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.A.truei DE converted from brown dataset ct file

eukarya.A.truei		GCGGAAGGAAGCUCACUGUAGAGGCUACUUGCUGGGUGC
#=GR eukarya.A.truei SS  >>>>>>>>...>>>>.>>..>>>>.........>>>>>.

eukarya.A.truei	UGUUGUUACUCUAUCAACCAGCCUUGGGGAAGGUCUGAGA
#=GR eukarya.A.truei SS  ......<<<<<..........<<<<<<...AAA.AAAAA.

eukarya.A.truei	UAAGAGCCACUUGUUGCCUUCACAAGGCAUUGCUUGGUGU
#=GR eukarya.A.truei SS  ....>>>>......>>>>>.....<<<<<>>>>>>>...<

eukarya.A.truei	AAGCAAGUGAGUUCCCAUCAAAGAUGGCUCAGUUGCAAGC
#=GR eukarya.A.truei SS  <<<<<<>>>>>>>...........>>>.............

eukarya.A.truei	UUAAUGCAAGAGACAUAGCAAAGAAGCCCAAUAUACUUCU
#=GR eukarya.A.truei SS  ........................................

eukarya.A.truei	GAUAUGGAUGCAAUGCCCAACAGACUGGAAAUGACUCACG
#=GR eukarya.A.truei SS  ......................<<<.......<<<<<<<<

eukarya.A.truei	GCUGGCAUGUUCAAGCUCAAUGACUGAGGGGAAGCAAGUG
#=GR eukarya.A.truei SS  <<<.....................<<<<>>>>>>>.....

eukarya.A.truei	AUGGCUUCCUAACCCAAUUCAGACCACUCUCCGGAAUUCC
#=GR eukarya.A.truei SS  ...<<<<<<<........aaaaaaaa....<<<<<<<<..

eukarya.A.truei	G
#=GR eukarya.A.truei SS	.

//
# STOCKHOLM 1.0

#=GS eukarya.B.bufo DE converted from brown dataset ct file

eukarya.B.bufo		GCGGAAGGAAGCUCACUGUAGAGGUCACGUGCUGAGUGC
#=GR eukarya.B.bufo SS  >>>>>>>>...>>>>.>>..>>>>.........>>>>>>

eukarya.B.bufo	GUCACGCUUGUGAUGUCAUCUCUAUCCCACCUCCGGGAAG
#=GR eukarya.B.bufo SS  >>>>......<<<<<.<<<<<........<<<<<<...AA

eukarya.B.bufo	GUCUGAGACAGGAGCCCCUCGCCGCCCUCACAGGGCGUCA
#=GR eukarya.B.bufo SS  A.AAAAA.....>>>>......>>>>>.....<<<<<>>>

eukarya.B.bufo	CCUGAUAUUCGGGUGAGUGAGCCCCCAGCAACCCACGUUG
#=GR eukarya.B.bufo SS  >>>>.....<<<<<<<>>>>>>>..........>>>....

eukarya.B.bufo	GAGUGGACCGGUCCGUUAUGUGGGAGAGGCUAUGCAAAAG
#=GR eukarya.B.bufo SS  ........................................

eukarya.B.bufo	ACGCCGAGCAGGGAUGUGGUGAGAUGGGCGGGUCACUGAU
#=GR eukarya.B.bufo SS  ........................................

eukarya.B.bufo	UUGAGGCCCGCCUACUCUUCAUCUGCGCCUCUGCCUGGUG
#=GR eukarya.B.bufo SS  ........................................

eukarya.B.bufo	GAUGCCGCCUCCUCCCCGGACCUUGGAAGUGACUCACGGC
#=GR eukarya.B.bufo SS  ....................<<<.......<<<<<<<<<<

eukarya.B.bufo	UGGCUUACUGAGUCCAAUGGCUGAGGCGAGGCAGCUGUGC
#=GR eukarya.B.bufo SS  <....................<<<<>>>>>>>>.>...<<

eukarya.B.bufo	GCCUCGUAACCCAAUUCAGACCACUCUCCGGAAUUCCG
#=GR eukarya.B.bufo SS	<<<<<<<........aaaaaaaa....<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS eukarya.C.opuntiae DE converted from brown dataset ct file

eukarya.C.opuntiae		GUUCUCCCCAUCCCUCUCUGGGUGCUUCUGCAUUCAGAG
#=GR eukarya.C.opuntiae SS  .......>>>>>>..........................

eukarya.C.opuntiae	CGAUAUAAUGCUCUUGAGAGCUUCCUGGGCGUAGAUAGUU
#=GR eukarya.C.opuntiae SS  .........>>>>....<<<<..>>..>>>>>>>....<<

eukarya.C.opuntiae	ACGCCGGGCGUCGCCAUCAGAAAAACAGCAGAGCUACGCU
#=GR eukarya.C.opuntiae SS  <<<<<<<.>>>>>>>............>>>>>>>...<<<

eukarya.C.opuntiae	UUGCAUGGGAGGCGGCGCGGAUGGUUGGUCUUUCAAUACG
#=GR eukarya.C.opuntiae SS  <<<<......<<<<<<<.<<<<<<...>>>>>>>......

eukarya.C.opuntiae	AGGAAAGGCUGUUGAGUGCAAUUUGCGGCCUUUGGCA
#=GR eukarya.C.opuntiae SS	..<<<<<<<....................>....<..

//
# STOCKHOLM 1.0

#=GS eukarya.E.asper DE converted from brown dataset ct file

eukarya.E.asper		GCGGAAGGAAGCUCACUGUAGAGGCUACAUGCAGAGUGC
#=GR eukarya.E.asper SS  >>>>>>>>...>>>>.>>..>>>>.........>>>>>.

eukarya.E.asper	AUAUGUCACUCAAGUACCUUGGGGAAGGUCUGAGACAGGA
#=GR eukarya.E.asper SS  ......<<<<<.....<<<<<<...AAA.AAAAA.....>

eukarya.E.asper	GCCGGUAAUUGCCCCAGCAGGGCAUCCCCUGAAAAGGGGA
#=GR eukarya.E.asper SS  >>>......>>>>>.....<<<<<>>>>>>....<<<<<<

eukarya.E.asper	GCGAGCUCCCAGAGACCCGGGGCCCAAAGGGGGUGGCAUG
#=GR eukarya.E.asper SS  >>>>>>>...........>>>...................

eukarya.E.asper	AGACGCGUGACCGUGUAUCUGGUACUCGCUGAUGCUUACU
#=GR eukarya.E.asper SS  ........................................

eukarya.E.asper	CCUUCCGGGCAUUGGAAGUGGCUCGCGGCUGGCACUCCCC
#=GR eukarya.E.asper SS  .........<<<.......<<<<<<<<<<<..........

eukarya.E.asper	UGAGUGCAAUGGCUGAGGUGAGGUAAUGGCGCCUCAUAAC
#=GR eukarya.E.asper SS  .............<<<<>>>>>>>......<<<<<<<...

eukarya.E.asper	CCAAUUCAGACCACUCUCCGGAAUUCCG
#=GR eukarya.E.asper SS	.....aaaaaaaa....<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS eukarya.G.gorilla DE converted from brown dataset ct file

eukarya.G.gorilla		AUAGGGCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUG
#=GR eukarya.G.gorilla SS  ................>>>>.>>..>>>>>........>

eukarya.G.gorilla	AGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGG
#=GR eukarya.G.gorilla SS  >>>>........<<<<<.........<<<<<.<<......

eukarya.G.gorilla	UCUGAGACUAGGGCCAGAAGCGGCCCUAACAGGGCUCUCC
#=GR eukarya.G.gorilla SS  ..AAAA.....>>>>......>>>>>.....<<<<<>>>>

eukarya.G.gorilla	CUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCC
#=GR eukarya.G.gorilla SS  >>>.....<<<<<<<>>>>>>>...........>>>....

eukarya.G.gorilla	GCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGC
#=GR eukarya.G.gorilla SS  ........................................

eukarya.G.gorilla	CCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAG
#=GR eukarya.G.gorilla SS  .......................................<

eukarya.G.gorilla	CUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGC
#=GR eukarya.G.gorilla SS  <<.......<<<<<<<<<<<....................

eukarya.G.gorilla	UGAGGUGAGGUACCCCGUAGGGGACCUCAUAACCCAAUUC
#=GR eukarya.G.gorilla SS  <<<<>>>>>>>>.>>>...<<<<<<<<<<<.......aaa

eukarya.G.gorilla	A
#=GR eukarya.G.gorilla SS	a

//
# STOCKHOLM 1.0

#=GS eukarya.K.polysporus DE converted from brown dataset ct file

eukarya.K.polysporus		GAAUACAGCAGUUCUCUCUUCGUAAGAAGAGAGAUUGUG
#=GR eukarya.K.polysporus SS  .................................>>>>>>

eukarya.K.polysporus	UUACCCUUCGUAACACAUUACCCGUGAGGGAACUAUUAGG
#=GR eukarya.K.polysporus SS  ..................>>>>>....<<<<<..>>>>>>

eukarya.K.polysporus	UGGAAACCUAGUUAGCUUUGUCGUCAUAAGUGAUCAACGU
#=GR eukarya.K.polysporus SS  >....<<<<<<<......>>>>>>>...............

eukarya.K.polysporus	CUUUCCCCUCGAUUUAUUUUCGGCGGGCGAAUGACGGAUG
#=GR eukarya.K.polysporus SS  .>>>>>>>>>>>.......<<<<<<<<<<<..........

eukarya.K.polysporus	GGAACGGCGAUAGUUACAAUGUUUGACGUAUCACGUGAUA
#=GR eukarya.K.polysporus SS  .....<<<<<<<..<<<<<<....>>>>>>>>>>>>>>>.

eukarya.K.polysporus	UUAUCACAAGGUAUGGUCUGUUGAGUGCAAUCGUAGGACC
#=GR eukarya.K.polysporus SS  ..<<<<<<<<<<<<.<<<....................>>

eukarya.K.polysporus	CCGGUUGUUAUCUACAACCGGUUGAA
#=GR eukarya.K.polysporus SS	>>>>>>>>.....<<<<<<.<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.K.thermotolerans DE converted from brown dataset ct file

eukarya.K.thermotolerans		GAACACAGCGAGACAACAAUCGCCAGGGGCUUCGGCCCU
#=GR eukarya.K.thermotolerans SS  .........>>>>>>........................

eukarya.K.thermotolerans	GAUUCUCGUGAGAGAAGCCGCUGGAAAGCGGUUGUGGGCG
#=GR eukarya.K.thermotolerans SS  ..>>>>>....<<<<<>>>>>>....<<<<<<......>>

eukarya.K.thermotolerans	CUGUCAUCAGAAAUACACAUGUUGGCCGGCGCUAUCGCCG
#=GR eukarya.K.thermotolerans SS  >>>>>...............>>>>>>>>>>>....<<<<<

eukarya.K.thermotolerans	CACCAAUGUGAUGGGAAAGGCAGCGGAUGUCUCGUUUGAC
#=GR eukarya.K.thermotolerans SS  <<.<<<<...........<<<<<<<..<<<<<<....>>>

eukarya.K.thermotolerans	UUUGCCUUAGGGUAAAGGUCUGUUGAGUGCAAUGGUAGGA
#=GR eukarya.K.thermotolerans SS  >>>>>.....<<.<<<.<<<....................

eukarya.K.thermotolerans	GGCCGCUUUAUGGUGGCCAA
#=GR eukarya.K.thermotolerans SS	>>>>>>>....<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.L.muta-1 DE converted from brown dataset ct file

eukarya.L.muta-1		GCGGAAGGAAGCUCACUGUAGAGGCCACUAGCUUGGGUG
#=GR eukarya.L.muta-1 SS  >>>>>>>>...>>>>.>>..>>>>..........>>>>>

eukarya.L.muta-1	UCUAUCACCCUACUUCCGCCUCUGGGAAGGUCUGAGGGAA
#=GR eukarya.L.muta-1 SS  .....<<<<<........<<<<<<...AAA.AAAAA....

eukarya.L.muta-1	GGGCCAAAUUGCCGCCCUAGCAGGGUGCCACCUUCUGAAG
#=GR eukarya.L.muta-1 SS  .>>>>.......>>>>>.....<<<<<>>>>>>>...<<<

eukarya.L.muta-1	GUGGGGUGAGUUCCCACCAAUGUGGGUCUCCGAUGAAGCC
#=GR eukarya.L.muta-1 SS  <<<<.>>>>>>>...........>>>..............

eukarya.L.muta-1	CUAGAAUUGAGGCAGGAGAAGUGGAGAGGGGUCGUAGGCU
#=GR eukarya.L.muta-1 SS  ........................................

eukarya.L.muta-1	CCUCCCCGCGGAUGCCUCUGUGGCUCCGUUCGGGAUUUGG
#=GR eukarya.L.muta-1 SS  ..................................<<<...

eukarya.L.muta-1	GAAUGACUCACGGCUGGCAGCUUUGAGUACAAUGGGAAGA
#=GR eukarya.L.muta-1 SS  ....<<<<<<<<<<<......................<<<

eukarya.L.muta-1	GGUGAAGCCCGCCAGCUUCAUAACCCAAUUCAGACCACUC
#=GR eukarya.L.muta-1 SS  <>>>>>>........<<<<<<........aaaaaaaa...

eukarya.L.muta-1	UCCGGAAUUCCG
#=GR eukarya.L.muta-1 SS	.<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS eukarya.P.canadensis DE converted from brown dataset ct file

eukarya.P.canadensis		UUCCCUCCAAAGUCUGUAUUUUACCUGCCUACAAAAGGA
#=GR eukarya.P.canadensis SS  ............>>>>>>>...>>>>>..........>>

eukarya.P.canadensis	GGAGUCCCCGGCGGACUUCCUCAGUAUUCGCAGGUGGGAA
#=GR eukarya.P.canadensis SS  >>>>>>>.....<<<<<<.<<<........<<<<<.....

eukarya.P.canadensis	AUUCGGUGAAAUCGCUCUGCCCACCAGGGAAAAGGUAAAA
#=GR eukarya.P.canadensis SS  ................>>>>>>..................

eukarya.P.canadensis	CUCUCCCUGGUCCUUGGAAGGACUUGUCCUUCUGAGUCUC
#=GR eukarya.P.canadensis SS  ....................................>>>>

eukarya.P.canadensis	GUGAGAGAUGCCAAGCGUGGAGACGCUAGGGUGGUCGCCA
#=GR eukarya.P.canadensis SS  ....<<<<..>>>>>>>>....<<<<<<<<..>>>>>>>.

eukarya.P.canadensis	UAAGAAACUUCAACAGGUCACACUGUUAUGGGAGGCGCCA
#=GR eukarya.P.canadensis SS  ...........>>>>>......<<<<<......<<<<<<<

eukarya.P.canadensis	CGGGCAGUUGGUCCCUUUGCAUCCAGAAGGAAGCUUUGGG
#=GR eukarya.P.canadensis SS  .<<<<<<...>>>>>>>>>>>>>>....<<<<<<<<<<<<

eukarya.P.canadensis	GCUGUUGAGUGCAAUAUACAGAGCGCUAGAAGGAGUCCUU
#=GR eukarya.P.canadensis SS  <<.............<<<<<<<>>>>>>>>>>>>>...<<

eukarya.P.canadensis	CCUUCUACGCGUAA
#=GR eukarya.P.canadensis SS	<<<<<<<.<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.P.cultripes DE converted from brown dataset ct file

eukarya.P.cultripes		AGAUGUGGAGGGAAGCUCAGUGCUGAGGCUACAACCUGA
#=GR eukarya.P.cultripes SS  >.>>>>>>>>>>...>>>>.>>..>>>>.........>>

eukarya.P.cultripes	GUGCAUUUGUCACUCUCAUACAUUCCUCAGGGAAGGUCUG
#=GR eukarya.P.cultripes SS  >>>.......<<<<<.........<<<<<<...AAA.AAA

eukarya.P.cultripes	AGAUUAGAGCCAUCUAUUGUCUUAACAAGGCAUUGCUUGG
#=GR eukarya.P.cultripes SS  AA.....>>>>......>>>>>.....<<<<<>>>>>>>.

eukarya.P.cultripes	UUUGAGCAAAUGAGUUACCAUCAAACCUUGUUCUGUUGUC
#=GR eukarya.P.cultripes SS  ..<<<<<<<>>>>>>>...........>>>..........

eukarya.P.cultripes	GCUAGACUGCACAAGUAAUAGAAGUGGUUUUCCUCUAUGG
#=GR eukarya.P.cultripes SS  ........................................

eukarya.P.cultripes	AUGCUGAGGCAACUGAUUUGGAAAGUGACUCAUGACUAGC
#=GR eukarya.P.cultripes SS  ...............<<<........<<<<<<<<<<<...

eukarya.P.cultripes	AAAUUCAAGUUCAAUUGCUGAGAGGAAGUCAUUACCUUCC
#=GR eukarya.P.cultripes SS  ..................<<<<>>>>>>>.....<<<<<<

eukarya.P.cultripes	UAACCCAAUUCAGACCACUCUCCGGAAUUCCG
#=GR eukarya.P.cultripes SS	<........aaaaaaaa....<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS eukarya.P.douglassii DE converted from brown dataset ct file

eukarya.P.douglassii		GCGGAAGGAAGCUCACUGUAGAGGUCACGCGCUGGGUGU
#=GR eukarya.P.douglassii SS  >>>>>>>>...>>>>.>>..>>>>.........>>>>>.

eukarya.P.douglassii	AUCGAUCACCCUCCUUGCUACCUUUGGGAAGGUCUGAGAG
#=GR eukarya.P.douglassii SS  ......<<<<<.........<<<<<<...AAA.AAAAA..

eukarya.P.douglassii	AAGGGCCAAGUGUCGCCUUAGCAGGGCGCCAUCUUAGGAA
#=GR eukarya.P.douglassii SS  ...>>>>......>>>>>.....<<<<<>>>>>>>...<<

eukarya.P.douglassii	GGUGGGUGAGUUCCCAGCAAUAGGGGUCUCCUGUAAUGCC
#=GR eukarya.P.douglassii SS  <<<<<>>>>>>>...........>>>..............

eukarya.P.douglassii	CCAGUUUGAGGCAGGAGAAGCGGGGCUGGAGGGGCUACUC
#=GR eukarya.P.douglassii SS  ........................................

eukarya.P.douglassii	CCUCCUUCCUGCGGAUGCCUCCGUGGCUUACGCGGGGCUU
#=GR eukarya.P.douglassii SS  ....................................<<<.

eukarya.P.douglassii	GGGAAUGACUCACGGCCGGCACGUUGAGUACAAUGGGCAG
#=GR eukarya.P.douglassii SS  ......<<<<<<<<<<<.....................<<

eukarya.P.douglassii	AGGUGAAGCGGCCGCUUCAUAACCCAAUUCAGACCACUCU
#=GR eukarya.P.douglassii SS  <<>>>>>>>....<<<<<<<........aaaaaaaa....

eukarya.P.douglassii	CCGGAAUUCCG
#=GR eukarya.P.douglassii SS	<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS eukarya.P.guilliermondii DE converted from brown dataset ct file

eukarya.P.guilliermondii		GUUCUCUCCGUCCACGGAGGCAGGUUUCUGCCUUCGCAC
#=GR eukarya.P.guilliermondii SS  .......>>>>>>..........................

eukarya.P.guilliermondii	AAAAUGCUCCUGAGAGCGUCCUGGCGCGAAAGCGCCGGGC
#=GR eukarya.P.guilliermondii SS  ...>>>>>>....<<<<<<.>>>>>>>....<<<<<<<.>

eukarya.P.guilliermondii	AGGGCCAUCAGAAAUCAGUCGAGUUUACUUGGCAUGGGAG
#=GR eukarya.P.guilliermondii SS  >>>>>>...........>>>>>>....<<<<<<......<

eukarya.P.guilliermondii	GCUCUGCGGACGGUUGGUCAUGUGUAUGAACAUGGCUAUU
#=GR eukarya.P.guilliermondii SS  <<<<<<.<<<<<<...>>>>>>>......<<<<<<<....

eukarya.P.guilliermondii	GAGUGCAAUAUGCGAACCUUGAAAAAGGCA
#=GR eukarya.P.guilliermondii SS	................>>>>....<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.P.mississippiensis DE converted from brown dataset ct file

eukarya.P.mississippiensis		UGGACCUGCCCACAAAAGGAGCUCCGUGCUCAGAAUUAC
#=GR eukarya.P.mississippiensis SS  >..>>>>>..........>>>>.....<<<<........

eukarya.P.mississippiensis	GCAGGUGGGAAAUUCGGUGGUUCACGCUGUCCAACAUUAC
#=GR eukarya.P.mississippiensis SS  .<<<<<....................>>>>>>........

eukarya.P.mississippiensis	CCUUUCUCUUGAGAGAUCCUGGCGAGGAAUCGCUGGGUGC
#=GR eukarya.P.mississippiensis SS  ....>>>>....<<<<..>>>>>>>....<<<<<<<.>>>

eukarya.P.mississippiensis	GGCCAUAAGAAAUCAGCCCCCUAAAAAGGGCAUGGGAGGC
#=GR eukarya.P.mississippiensis SS  >>>>...........>>>>>>....<<<<<<......<<<

eukarya.P.mississippiensis	UGCACGGACAGUUGGUCCUUGGAAAGAGGGCUAUUGAGUG
#=GR eukarya.P.mississippiensis SS  <<<<.<<<<<<...>>>>>>.....<<<<<<.........

eukarya.P.mississippiensis	CAAUAUACAGACUGGGGGCUUUGGCCCCUGGAA
#=GR eukarya.P.mississippiensis SS	....<......>>>>>>>>....<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.P.strasburgensis DE converted from brown dataset ct file

eukarya.P.strasburgensis		UUCUCAUCAAAGUCUGUAUUUACCUGCCUACACAAGGGG
#=GR eukarya.P.strasburgensis SS  >>>>>>>>>>>.>>>>>>>..>>>>>..........>>>

eukarya.P.strasburgensis	CCCUCUUCCCCCAGAGGGACCCAGCAGGAGCAGGUGGGAA
#=GR eukarya.P.strasburgensis SS  >>>>>>......<<<<<<.<<<........<<<<<....A

eukarya.P.strasburgensis	AUUCGGUGGUACACGCCGCCCAUUAAUUUCUCUCUUGAGA
#=GR eukarya.P.strasburgensis SS  AA.AAAAA.......>>>>>>........>>>>>....<<

eukarya.P.strasburgensis	GAGUCCAGGCGAGGAAUCGCUAGGGUGUUGCCAUAAGAAA
#=GR eukarya.P.strasburgensis SS  <<<.>>>>>>>>....<<<<<<<<.>>>>>>>........

eukarya.P.strasburgensis	UUCAGUCCGCCUAGCGGGCAUGGGAGGCUUCACGGGCGGU
#=GR eukarya.P.strasburgensis SS  ....>>>>>>...<<<<<<......<<<<<<<.<<<<<<.

eukarya.P.strasburgensis	UGGUCCCUAGUGCAAAACUUUCGCGCUAGGAGGCUUUUGA
#=GR eukarya.P.strasburgensis SS  ..>>>>>>>>>>>>>>...<<<<<<<<<<<.<<<......

eukarya.P.strasburgensis	GUGCAAUAUACAGACCGCCUAGUGGUUCCUUGGGAUCAUC
#=GR eukarya.P.strasburgensis SS  .......<<<<<<<>>>>>>>>>>>>>>....<<<<<<.<

eukarya.P.strasburgensis	UGGGCGGAACGCGAUACCGAUUAUUUUGGUGAGAA
#=GR eukarya.P.strasburgensis SS	<<<<<<<.......aaaaaaaa..<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS eukarya.S.carlsbergensis DE converted from brown dataset ct file

eukarya.S.carlsbergensis		GUGGAACAGUGGUGAUUCCUACGAUUAAGAAACCUGUUU
#=GR eukarya.S.carlsbergensis SS  .>>>>>>>>>>>>>..>>>>>>>........>>>>>...

eukarya.S.carlsbergensis	GCAAAAGGGCCUGCCCACGCGGGUCAUCUUAUUUAUCAGG
#=GR eukarya.S.carlsbergensis SS  .......>>>>>>>....<<<<<<<...........<<<<

eukarya.S.carlsbergensis	UGGGAAAUUCGGUGGAACACAGUGGAGCCUUGCCUUCCGG
#=GR eukarya.S.carlsbergensis SS  <....AAA.AAAAA........>>>>>>............

eukarya.S.carlsbergensis	GCCAUUGUCUCUGGCAGUGGCCCCUGCUCGUGAGAGAAGA
#=GR eukarya.S.carlsbergensis SS  .......................>>>>>>....<<<<<<>

eukarya.S.carlsbergensis	AACUUGCUGGGGAACCAGUCUUUACCGACCGUUGCUAUCA
#=GR eukarya.S.carlsbergensis SS  >..>>>>>>>....<<<<<<<<<......>>>>>>>....

eukarya.S.carlsbergensis	GAAAUUGAACGGGGCCCGGUCCCGCCGGGCCUCGAUGGGA
#=GR eukarya.S.carlsbergensis SS  .........>>>>>>>>>>>...<<<<<<<<<<<......

eukarya.S.carlsbergensis	ACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCCACGG
#=GR eukarya.S.carlsbergensis SS  ..<<<<<<<...<<<<<<...>>>>>>>>>>>>>>....<

eukarya.S.carlsbergensis	CGCGCUGCAAGGUCUGUUGAGUGCAAUCGUAGGACGCCAU
#=GR eukarya.S.carlsbergensis SS  <<<<<<<<<<.<<<.............<<<<<<<>>>>>.

eukarya.S.carlsbergensis	UCGUGGCGAACCCGAUACCGAUUACUGCUGCUGCUCCAUC
#=GR eukarya.S.carlsbergensis SS	...<<<<<.......aaaaaaaa..<<<<<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.castellii DE converted from brown dataset ct file

eukarya.S.castellii		AGUUGGAACAGCGACGACUCCUACGACUUAGAGACCUGU
#=GR eukarya.S.castellii SS  ...>>>>>>>>>>>>>..>>>>>>>........>>>>>.

eukarya.S.castellii	UUACACAAGGAGGGUACCCUCCCUCAACCAACAGGUGGGA
#=GR eukarya.S.castellii SS  ........>>>>>....<<<<<.........<<<<<....

eukarya.S.castellii	AAUUCGGUGAAACACAGUGGAAUCAUUCCUUCCAGCCUGG
#=GR eukarya.S.castellii SS  AAA.AAAAA........>>>>>>.................

eukarya.S.castellii	GCUCGCUUCCUUCGGGAAGCUAGGCUCAGGUCUUUCCGUG
#=GR eukarya.S.castellii SS  ...........................>>>.>>>>>>...

eukarya.S.castellii	AGGACAGCCUAGCCGGGGACCGGUCUGCCUGGACGUUGUU
#=GR eukarya.S.castellii SS  .<<<<<<<<<.>>>>>...<<<<<.........>>>>>>>

eukarya.S.castellii	AUCAGAAAUUCACACGGGUAACCGUGAUGGGAAAGCAACG
#=GR eukarya.S.castellii SS  ............>>>>>....<<<<<.......<<<<<<<

eukarya.S.castellii	AGUGUUUUAUUUGACGGGCUUCUGUUUACACAGUGGUCCA
#=GR eukarya.S.castellii SS  ...<<<<<<...>>>>>>>>>>>>>....<<<<<<<<<<.

eukarya.S.castellii	GUCUGUUGAGUGCAAUCGUAGGACAUGCCCUAGGGCUUGA
#=GR eukarya.S.castellii SS  <<<.............<<<<<<<>>>>>>....<<<<<<.

eukarya.S.castellii	ACCCGAUACCGAUUACCGUCCUUGUCCCAACCCUC
#=GR eukarya.S.castellii SS	......aaaaaaaa..<<<<<<<<<<<<<......

//
# STOCKHOLM 1.0

#=GS eukarya.S.cerevisiae DE converted from brown dataset ct file

eukarya.S.cerevisiae		GUGGAACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUU
#=GR eukarya.S.cerevisiae SS  .>>>>>>>>>>>>>..>>>>>>>........>>>>>...

eukarya.S.cerevisiae	ACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGAUAUUA
#=GR eukarya.S.cerevisiae SS  .......>>>>>>>>>>....<<<<<<<.<<<........

eukarya.S.cerevisiae	UCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCC
#=GR eukarya.S.cerevisiae SS  .<<<<<....AAA.AAAAA........>>>>>>.......

eukarya.S.cerevisiae	UCCGGGUUAAUGUCGCUUUUGGCAUUGGCCCCUGCUCCUG
#=GR eukarya.S.cerevisiae SS  ...............................>>>>>>...

eukarya.S.cerevisiae	AGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGU
#=GR eukarya.S.cerevisiae SS  .<<<<<<......>>>>>....<<<<<..........>>>

eukarya.S.cerevisiae	UGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUC
#=GR eukarya.S.cerevisiae SS  >>>>............>>>>>>>>>>>....<<<<<<<<<

eukarya.S.cerevisiae	CGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCC
#=GR eukarya.S.cerevisiae SS  <<........<<<<<<<...<<<<<<...>>>>>>>>>>>

eukarya.S.cerevisiae	CGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGU
#=GR eukarya.S.cerevisiae SS  >>>......<<<<<<<<<<<.<<<.............<<<

eukarya.S.cerevisiae	AGGACGUCAUUAGUGGCGAACCCGAUACCGAUUACUGCUG
#=GR eukarya.S.cerevisiae SS  <<<<>>>>>....<<<<<.......aaaaaaaa..<<<<<

eukarya.S.cerevisiae	CUGUUCCAGC
#=GR eukarya.S.cerevisiae SS	<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.dairensis DE converted from brown dataset ct file

eukarya.S.dairensis		ACUAAACAGUGAUGAUUCCUACGUUUUAAGAACCUGUUU
#=GR eukarya.S.dairensis SS  .>>>>>>>>>>>>>..>>>>>>>........>>>>>...

eukarya.S.dairensis	ACAGAAGGAGGAUAACACUUUAGUGCUUUUCUCAUAUAAG
#=GR eukarya.S.dairensis SS  .......>>>>>>>>>>>....<<<<<<<<<<<.......

eukarya.S.dairensis	UUCAGGUGGGAAAUUCGGUGAAACACAGCGGAACCAACAA
#=GR eukarya.S.dairensis SS  ..<<<<<....AAA.AAAAA........>>>>>>......

eukarya.S.dairensis	CAUCUACCAAGGUGUCGUUGCCCUCCCCAAGCCUAGACGG
#=GR eukarya.S.dairensis SS  ........................................

eukarya.S.dairensis	UGUCUUCUUCUAGGAGGAGCUUAAGUCCAGGUCCUUCCCG
#=GR eukarya.S.dairensis SS  .................................>>>>>>.

eukarya.S.dairensis	UGAGGGCAGUUUUCUUUGCAAUUUUAAAUUUUACUGGGGA
#=GR eukarya.S.dairensis SS  ...<<<<<<.......................>>>>>...

eukarya.S.dairensis	ACCGGUCUGCCUAAAAAUUGCCAUUGAAGAAUUUAUUGGG
#=GR eukarya.S.dairensis SS  .<<<<<..................................

eukarya.S.dairensis	ACGUCGUUAGCAGAAAUUCACAGAGACCUCUUUCAAAGAA
#=GR eukarya.S.dairensis SS  .>>>>>>>...............>>>>>>>>>>>...<<<

eukarya.S.dairensis	AUUGGUCCCUGAUGGGAACAGCGACGGUAGUUCCAUUUGA
#=GR eukarya.S.dairensis SS  <<<<<<<<...........<<<<<<<...<<<<<<...>>

eukarya.S.dairensis	CUUGUGGUGUGAAAUAAUAUCGACCAUAAGGUCUGUUGAG
#=GR eukarya.S.dairensis SS  >>>>>>>>..............<<<<<<<.<<<.......

eukarya.S.dairensis	UGCAAUCGUAGGACAGAUUUGAUUUGAAAAUCUGAACCCG
#=GR eukarya.S.dairensis SS  ......<<<<<<<>>>>>>>>>...<<<<<<<<<......

eukarya.S.dairensis	AUACCGAUUACCAUUGUUGUUUAGUC
#=GR eukarya.S.dairensis SS	.aaaaaaaa..<<<<<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.fibuligera DE converted from brown dataset ct file

eukarya.S.fibuligera		GAUCUCUGUCCUGUUCUGGUAUCCUACGGGAUAGUCCAG
#=GR eukarya.S.fibuligera SS  ..........>>>>>>.......................

eukarya.S.fibuligera	GACUAUUGGAUUUAAUUCCAAAUGCUCCUGAGAGCUCCAU
#=GR eukarya.S.fibuligera SS  .......................>>>>....<<<<.....

eukarya.S.fibuligera	AGAGCGGAAGCUCUGGACGAAGCCAUCAGAAAAAUCGCUU
#=GR eukarya.S.fibuligera SS  >>>>>....<<<<<...>>>>>>>................

eukarya.S.fibuligera	ACUUGUGAAGUGAUGGGCCACUCUACUUCGGAGUGGCUCA
#=GR eukarya.S.fibuligera SS  .............>>>>>>>>>>>.....<<<<<<<<<<<

eukarya.S.fibuligera	AUGGAAGCGGCUUCGUGGACAGUUGGCUUAGGCCGCCCUC
#=GR eukarya.S.fibuligera SS  ........<<<<<<<.<<<<<<...>>>>>>>>>>>>>..

eukarya.S.fibuligera	AGGGGCGGUUUGAGCUGUUAAGUGCAAUACACAGACAUUG
#=GR eukarya.S.fibuligera SS  ..<<<<<<<<<<<<<....................>>...

eukarya.S.fibuligera	UGCA
#=GR eukarya.S.fibuligera SS	<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.globosus DE converted from brown dataset ct file

eukarya.S.globosus		UUAGAGCAGUAGCAACUCCUACGAUUUUAACCUGCUUAC
#=GR eukarya.S.globosus SS  .>>>>>>>>>>>>>..>>>>>>>......>>>>>.....

eukarya.S.globosus	GAACUAUUAGUCUGAUCUAAUAAUACAUGCAGGUGGGAAA
#=GR eukarya.S.globosus SS  ....>>>>>>......<<<<<<.......<<<<<....AA

eukarya.S.globosus	UUCGGUGAAACACAACAAAUGAGGUUUCAGUUAUUUGGGC
#=GR eukarya.S.globosus SS  A.AAAAA............>>>>>>.............>>

eukarya.S.globosus	UCGUGAGAGCAGCCUGGGGAACCUGGUUAUAAUAGCGGCG
#=GR eukarya.S.globosus SS  >>....<<<<>>>>>>>....<<<<<<<.......>>>>>

eukarya.S.globosus	CUAUCAGAAAUUCAACGCUAUCAAAUUUUGAUGGUGAUGG
#=GR eukarya.S.globosus SS  >>.............>>>>>>>>>...<<<<<<<<<....

eukarya.S.globosus	GAACGGCGCUAGCAACAAACAUAUUUUAUGUACCUCACGU
#=GR eukarya.S.globosus SS  ....<<<<<<<....................<<<<<<...

eukarya.S.globosus	GUUUGACUUAAUCAUUUACUGGUUAAAGUCUGUUCAGUGC
#=GR eukarya.S.globosus SS  ....>>>>>>>>>>.....<<<<<<<.<<<..........

eukarya.S.globosus	AAUCGUAGGACUUCUAAGCAAUUAGUUGCACCCGAUACCG
#=GR eukarya.S.globosus SS  ...<<<<<<<>>>>>>>....<<<<<<<.......aaaaa

eukarya.S.globosus	AUCAAUGGUACUGUUCUAAU
#=GR eukarya.S.globosus SS	aaa..<<<<<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.kluyveri DE converted from brown dataset ct file

eukarya.S.kluyveri		CCGGAACAGUGGCAUUCCUACUACAAACCUGUUUGCACA
#=GR eukarya.S.kluyveri SS  .>>>>>>>>>>>>..>>>>>>>....>>>>>........

eukarya.S.kluyveri	AGGAGCGGUCGGCGUCAGUCGCACCCUGCUCAGAAAUACA
#=GR eukarya.S.kluyveri SS  ...>>>>>>>>>>....<<<<<<<<<<...........<<

eukarya.S.kluyveri	GGUGGGAAAUUCGGUGAAACGCGGCGGAGCAACUAUUUCC
#=GR eukarya.S.kluyveri SS  <<<....AAA.AAAAA.........>>>>>>.........

eukarya.S.kluyveri	GAGGGCCGUUCUCGGUCCUGAUUUCCGUGAGGAAAGCGUU
#=GR eukarya.S.kluyveri SS  .....................>>>>>....<<<<<>>>>>

eukarya.S.kluyveri	UGGAAUUUAAACGCUUGGACGUUGUCAUCAGAAAUACACC
#=GR eukarya.S.kluyveri SS  >>.....<<<<<<<.....>>>>>>>............>>

eukarya.S.kluyveri	AGUCUCUUGGCUGGAUGGGAAGGCAGCGGAUGCUCCGUUU
#=GR eukarya.S.kluyveri SS  >>>>....<<<<<<.......<<<<<<<..<<<<<<....

eukarya.S.kluyveri	GACUGUGUUUAGCUUCGGCGACACAGGUCUGUUGAGUGCA
#=GR eukarya.S.kluyveri SS  >>>>>>>>>..>>....<<<<<<<<.<<<...........

eukarya.S.kluyveri	AUCGUAGGACACUUCUUAUGAGGUGAACCCGAUACCGAUU
#=GR eukarya.S.kluyveri SS  ..<<<<<<<>>>>>>....<<<<<<.......aaaaaaaa

eukarya.S.kluyveri	AUUGCCGGUGUUUCGUU
#=GR eukarya.S.kluyveri SS	...<<<<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.octosporus DE converted from brown dataset ct file

eukarya.S.octosporus		CAUGCCGGACGUACGGACAAACGCCGCACUUCCUCAAAU
#=GR eukarya.S.octosporus SS  .......>>>>>>>>>>>>>..>>>>>>>.>>>>>....

eukarya.S.octosporus	UCAGACGCACUUUUACAAGUGUUACGCGCAUUGAGGGGGU
#=GR eukarya.S.octosporus SS  ......>>>>>.....<<.<<<..........<<<<<...

eukarya.S.octosporus	AAGGUCGGAGGAACUUCUUCGUUGCAUGCUCGUGAGGAGC
#=GR eukarya.S.octosporus SS  .AAA.AAAAA.....>>>>>.....>>>>>>.....<<<<

eukarya.S.octosporus	GGAGGACGAAAGUCCUGCCGGGUGUACCAGAAAUUCGAUC
#=GR eukarya.S.octosporus SS  <<>>>>>....<<<<<..>>>>>>>............>>>

eukarya.S.octosporus	UCUUGGUUCGUCCUUUGAGAUCUUGAAACGCACCCGAGAA
#=GR eukarya.S.octosporus SS  >>..............<<<<<........<<<<<<<.<<<

eukarya.S.octosporus	GAUGUCUUUUAGUGCAAUGUGCGGCACCUGUGAAAAGUCA
#=GR eukarya.S.octosporus SS  <<................<<<<<<<>>>>>........<<

eukarya.S.octosporus	GGCAACUCGAUUCCGACUAAUCUUGUCUGUAUGUCUGGUA
#=GR eukarya.S.octosporus SS  <<<.......aaaaaaaa..<<<<<<<<<<<<<.......

eukarya.S.octosporus	UG
#=GR eukarya.S.octosporus SS	..

//
# STOCKHOLM 1.0

#=GS eukarya.S.pombe DE converted from brown dataset ct file

eukarya.S.pombe		CAUGCUGGACGUACGGGCGAACGCCGCACUUCCUCAAAU
#=GR eukarya.S.pombe SS  .......>>>>>>>>>>>>>..>>>>>>>.>>>>>....

eukarya.S.pombe	UCAAACGCGUUGAAAAGCGCACAGCUCGUUGAGGGGGUAA
#=GR eukarya.S.pombe SS  ......>>>>.....<.<<<..........<<<<<....A

eukarya.S.pombe	GGUCGGAGAAACAUCUUCGUUGCGUGCUCGUGAGGAGCGA
#=GR eukarya.S.pombe SS  AA.AAAAA.....>>>>>.....>>>>>>.....<<<<<<

eukarya.S.pombe	AGAACGAACGUUCUGCCGAAUGUACCAGAAAUUCAAUCAG
#=GR eukarya.S.pombe SS  >>>>>....<<<<<..>>>>>>>............>>>>>

eukarya.S.pombe	UAUGGCCUCGUUUGUCGUACCUGAUUUUGAAACGCAUUCG
#=GR eukarya.S.pombe SS  >>>>>>.......<<<<<<<.<<<<........<<<<<<<

eukarya.S.pombe	AGAAGAUUUAUUUUAGUGCAAUGUGUGGCACCUGUUUGUC
#=GR eukarya.S.pombe SS  .<<<<<................<<<<<<<>>>>>.....<

eukarya.S.pombe	AGGUAACUCGAUUCCGACUAAUCUUGUCUGUAUGUCUGGU
#=GR eukarya.S.pombe SS  <<<<.......aaaaaaaa..<<<<<<<<<<<<<......

eukarya.S.pombe	GUGGU
#=GR eukarya.S.pombe SS	.....

//
# STOCKHOLM 1.0

#=GS eukarya.S.servazzii DE converted from brown dataset ct file

eukarya.S.servazzii		GAACACAGAGGAUCGAUAAUGACCAGGAACUGUAACAGG
#=GR eukarya.S.servazzii SS  .........>>>>>>........................

eukarya.S.servazzii	UUCUGUUUCCUCGUGAGAGGGGCUUGGGGAACCGAGUCUG
#=GR eukarya.S.servazzii SS  ........>>>>....<<<<>>>>>>>....<<<<<<<..

eukarya.S.servazzii	GCGUUGCUAUAAGAAAUCUACAGCGUUGUUCGUUACUUGU
#=GR eukarya.S.servazzii SS  .>>>>>>>................>>>>>>>>>>>....<

eukarya.S.servazzii	AACGUGGCAACCCUGAUGGGAAUGGUAACGGAUGAUCCAU
#=GR eukarya.S.servazzii SS  <<<<<<.<<<<............<<<<<<<..<<<<<<..

eukarya.S.servazzii	UUGACGUACUGCUACCACUUGUGAUAGCGGUAAGGUCUGU
#=GR eukarya.S.servazzii SS  ..>>>>>>>>>>>>>>>....<<<<<<<<<<<<.<<<...

eukarya.S.servazzii	UGAGUGCAAUCGUAGAGCAAAUGUUCGCAUUUGAA
#=GR eukarya.S.servazzii SS	.................>>>>>>....<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.S.unisporus DE converted from brown dataset ct file

eukarya.S.unisporus		GAACACAGAGGAUCAAUUAUCAAAGACCAGGAACUGUAA
#=GR eukarya.S.unisporus SS  .........>>>>>>........................

eukarya.S.unisporus	AGGGUUCUGUUUCCUCGUGAGAGGGGCUUGGGGAACCGAG
#=GR eukarya.S.unisporus SS  ..........>>>>>>....<<<<<<>>>>>....<<<<<

eukarya.S.unisporus	UUUGGCGUUGUUAUAAGAAAUCAACAGGGUUUGGUUUGGC
#=GR eukarya.S.unisporus SS  .....>>>>>>>.....................>>>>>>>

eukarya.S.unisporus	AUUUUUCGAAGUGGUUGGCCGAACUCUGAUGGGAAUGGCA
#=GR eukarya.S.unisporus SS  >>>>....<<<<<<<<<<<.................<<<<

eukarya.S.unisporus	ACGGAUGAUCCAUUUGACGUAUCACUAUUAACAAGUGAUA
#=GR eukarya.S.unisporus SS  <<<..<<<<<<....>>>>>>>>>>>.......<<<<<<<

eukarya.S.unisporus	AGGUCUGUUGAGUGCAAUCGUAGAGCAAAUGGUAACACAU
#=GR eukarya.S.unisporus SS  <.<<<....................>>>>>>......<<<

eukarya.S.unisporus	UUGAA
#=GR eukarya.S.unisporus SS	<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.T.delbrueckii DE converted from brown dataset ct file

eukarya.T.delbrueckii		UCCUACGAUUUAGAAACCUGUUUGCUAACGGAGUCUCAG
#=GR eukarya.T.delbrueckii SS  >>>>>>>........>>>>>..........>>>>>....

eukarya.T.delbrueckii	GGCUCACACUAAUAGCAGGUGGGAAAUUCGGUGAAUCACU
#=GR eukarya.T.delbrueckii SS  <<<<<..........<<<<<....................

eukarya.T.delbrueckii	GCGGAACCCGACAGAGCCUAACAAGCUUUGUCGACCGGUU
#=GR eukarya.T.delbrueckii SS  .>>>>>>.................................

eukarya.T.delbrueckii	GCCUUGGCGACUUUUCCGUGAGGAGGGCCUGGGGAACCAG
#=GR eukarya.T.delbrueckii SS  ............>>>>>....<<<<<>>>>>>....<<<<

eukarya.T.delbrueckii	GCUCAUAUGGUCAUUGUCACAAGAAAUCAACUCGGUAGUC
#=GR eukarya.T.delbrueckii SS  <<.........>>>>>>>............>>>>>>>>>.

eukarya.T.delbrueckii	CUGUACUAUCGAGGAUGGGAAGGCAAUGGACGUUCCGUUU
#=GR eukarya.T.delbrueckii SS  ....<<<<<<<.<<.......<<<<<<<...<<<<<<...

eukarya.T.delbrueckii	AACUUGAUCUCAUCAAGGUUUGUUGAGUGCAAUCGUAGGA
#=GR eukarya.T.delbrueckii SS  >>>>>>>>...<<<<<.<<<.............<<<<<<<

eukarya.T.delbrueckii	CGGUCUUAGACCUGAA
#=GR eukarya.T.delbrueckii SS	>>>>>...<<<<.<..

//
# STOCKHOLM 1.0

#=GS eukarya.W.fluorescens DE converted from brown dataset ct file

eukarya.W.fluorescens		GUUCUCUCCAUCCAGACUUAUAGAUUGAAACUUUCCUUG
#=GR eukarya.W.fluorescens SS  .......>>>>>>..........................

eukarya.W.fluorescens	AAAGUUUCGGCUUAUGAGUUACAAACUGCUCUUGAGAGCG
#=GR eukarya.W.fluorescens SS  ..........................>>>>>....<<<<<

eukarya.W.fluorescens	UCCUUAGCGUGCAAACGCUGGGCGGUGCUAUCAGAAAUUU
#=GR eukarya.W.fluorescens SS  ..>>>>>>>>....<<<<<<<<>>>>>>>...........

eukarya.W.fluorescens	ACCAGUCCUUACUUCGUAUUGGGACUGGAUGGGAAUGGCA
#=GR eukarya.W.fluorescens SS  .>>>>>>>>>>>...<<<..<<<<<<<<........<<<<

eukarya.W.fluorescens	CUGCGGAUGGUUGGCCCUCUGAAUGAGAGAGAGGGCUUUU
#=GR eukarya.W.fluorescens SS  <<<.<<<<<<...>>>>>>>.........<<<<<<<....

eukarya.W.fluorescens	GAGUGCAAUAUGCGAACUUGGAUAUUCCAAGAA
#=GR eukarya.W.fluorescens SS	................>>>>>>...<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.Z.bailii DE converted from brown dataset ct file

eukarya.Z.bailii		GAACACUGUGGGACACUAUGCCGACCCGCUGACUUUCUC
#=GR eukarya.Z.bailii SS  ........>>>>>>.........................

eukarya.Z.bailii	GGUCAACGGGCCGUUUCCGUGAGGAAAGUCUGGGGAACUA
#=GR eukarya.Z.bailii SS  .............>>>>>....<<<<<>>>>>>....<<<

eukarya.Z.bailii	GGCUUGCAGCUGCUGUCACAAGAAAUCAACGCUCACAGUA
#=GR eukarya.Z.bailii SS  <<<.......>>>>>>>...........>>>>>......<

eukarya.Z.bailii	GCGGAUGGGAAGACAGCAGAGUUCCAUUUAGCUUGAACAC
#=GR eukarya.Z.bailii SS  <<<<.......<<<<<<<..<<<<<<...>>>>>>>>>>.

eukarya.Z.bailii	AACGUUGAUUGUUUAAGGCUUGUUGAGUGCAAUCGUAGGA
#=GR eukarya.Z.bailii SS  .........<<<<<<<.<<<....................

eukarya.Z.bailii	CAAGAA
#=GR eukarya.Z.bailii SS	......

//
# STOCKHOLM 1.0

#=GS eukarya.Z.florentinus DE converted from brown dataset ct file

eukarya.Z.florentinus		GAAUUCAGCGGGACGGCAAUGGGUUAGUCGUCAUGACUA
#=GR eukarya.Z.florentinus SS  ........>>>>>>.........................

eukarya.Z.florentinus	AUUCGGCGCAUAACCGGUCGCCUCUGCAGCGUAAGCUACA
#=GR eukarya.Z.florentinus SS  ........................................

eukarya.Z.florentinus	UUGGGGACUUUUCCGUGAGGAGGGAUCUUGGGGAACCAAG
#=GR eukarya.Z.florentinus SS  ........>>>>>>....<<<<<<.>>>>>>....<<<<<

eukarya.Z.florentinus	ACCAUAUGGUUGUUGUCAUCAGAAAUCAACCAGGUUACGU
#=GR eukarya.Z.florentinus SS  <.........>>>>>>>...........>>>>>>>>>>..

eukarya.Z.florentinus	AAGUUACCUGGUAUGGGAAGGCAACUGUAAGUUCCGUUUG
#=GR eukarya.Z.florentinus SS  ..<<<<<<<<<<.......<<<<<<<....<<<<<<...>

eukarya.Z.florentinus	ACUUGUGCUAAUUAGUAUAAGGUCUGUUGAGUGCAAUCGA
#=GR eukarya.Z.florentinus SS  >>>>>>>>>....<<<<<<<.<<<................

eukarya.Z.florentinus	AGGACAAGUCUUAUAGAUUUGAA
#=GR eukarya.Z.florentinus SS	....>>>>>>>...<<<<<<<..

//
# STOCKHOLM 1.0

#=GS eukarya.Z.rouxii DE converted from brown dataset ct file

eukarya.Z.rouxii		UCCUACGCAAUUUUACCUGCCUUCAUAAGGAACUCAAAG
#=GR eukarya.Z.rouxii SS  >>>>>>>.......>>>>>..........>>>>>>>>>>

eukarya.Z.rouxii	GGUUCAGUUAGUACUUAACUUACUAUAUAAGCAGGUGGGA
#=GR eukarya.Z.rouxii SS  >...........<<<<<<<<.<<<.......<<<<<....

eukarya.Z.rouxii	AAUUCGGUGGAACUCUAAGAGACAAUCAGCCGGAUCUUUA
#=GR eukarya.Z.rouxii SS  .................>>>>>>.................

eukarya.Z.rouxii	GCUUAAUUGUUAAAGAACUGUUUCCGUGAGGAAAGUCUGG
#=GR eukarya.Z.rouxii SS  ....................>>>>>....<<<<<>>>>>>

eukarya.Z.rouxii	GGAACUGGACUUGCAGCUGCUGUCACAAGAAAUCAACGCC
#=GR eukarya.Z.rouxii SS  ....<<<<<<.......>>>>>>>...........>>>>>

eukarya.Z.rouxii	CUUUGUUGGUGGAUGGGAAGGCAGUAGAGGUCUCUUUUGG
#=GR eukarya.Z.rouxii SS  .......<<<<<.......<<<<<<<...<<<<<<...>>

eukarya.Z.rouxii	CUUGGAUGCAAAUUUGGACGUCCAAGGCUUGCUGAGUGCA
#=GR eukarya.Z.rouxii SS  >>>>>>>>..........<<<<<<<.<<<...........

eukarya.Z.rouxii	AUCGUGGGACAAAGAA
#=GR eukarya.Z.rouxii SS	..<<<<<<<>...<..

//
# STOCKHOLM 1.0

#=GS plastid.C.paradoxa-cyanelle DE converted from brown dataset ct file

plastid.C.paradoxa-cyanelle		CGAAUUUAAUUAAUGAUUACAGAUUUAUUCAAUCUGAGG
#=GR plastid.C.paradoxa-cyanelle SS  >>>>>>>.>>>>>>>>>C.>>>>>>.....<<<<<<...

plastid.C.paradoxa-cyanelle	AAAGUCCGGGCUCCUAUAAAGGUUAGAAUUGCUGGGUAAU
#=GR plastid.C.paradoxa-cyanelle SS  ..CC.CCCCCAAAAA.B>>>>>>>.>>>.>>>>>>>....

plastid.C.paradoxa-cyanelle	UCCCAGUACGAGAUAUCGUGAGGAUAGUGCCACAGAAAAA
#=GR plastid.C.paradoxa-cyanelle SS  .<<<<<>>>>>....<<<<.<>>...>>>>>.........

plastid.C.paradoxa-cyanelle	CACCGCUUAAAAAUAUUUUAAGUAAGGGUGCAAAGGCUUG
#=GR plastid.C.paradoxa-cyanelle SS  ..>>>>>>>>>>...<<<<<<<<..<<.......>>>>>>

plastid.C.paradoxa-cyanelle	GUUAAAGCAAACCAGUUAGAUUUCAAAAUCUAUACUUAGU
#=GR plastid.C.paradoxa-cyanelle SS  .......<<<<<<>>>>>>>>>....<<<<<<.<<<.<<<

plastid.C.paradoxa-cyanelle	AAACCCCGUUCAGGAGCAAAGUUUAGCGGAAAGUAAUUAA
#=GR plastid.C.paradoxa-cyanelle SS  ..<<<<<<<<<aaaaa...>>>.....>>>>>>>>>..<<

plastid.C.paradoxa-cyanelle	CCUUUUUUCUUUCCUUAUAUUUAUUUUUUACUGCUAGAAA
#=GR plastid.C.paradoxa-cyanelle SS  <<<<<<<<<<<<<<...............<<<......>>

plastid.C.paradoxa-cyanelle	AAUUGAGUAAUUAAUUUUGAAGACAGAUAAUCAUUUUAUA
#=GR plastid.C.paradoxa-cyanelle SS  >>>>>>....<<<<<<<<..........c<<<<<<>>..<

plastid.C.paradoxa-cyanelle	AACAAAACCCGGCUUAAAAUUAAGUUCGUUUU
#=GR plastid.C.paradoxa-cyanelle SS	<......bccccccc..<<<.<<<<<<<....

//
# STOCKHOLM 1.0

#=GS plastid.N.olivacea-chloroplast DE converted from brown dataset ct file

plastid.N.olivacea-chloroplast		CUCAAGCAAAGCGAUUGCAGAGCAACUAGAAGAUGCUCU
#=GR plastid.N.olivacea-chloroplast SS  .>>>>>.>>>>>>>>>.>>>>>>>>>>...<<<<<<<<<

plastid.N.olivacea-chloroplast	GAGGAAAGUCCGGGCUCCCUAACUAUUCCAGCUGCUGGAU
#=GR plastid.N.olivacea-chloroplast SS  <.....BB.BBBBBAAAAA...>>>>>>.>>>>>>>>>>.

plastid.N.olivacea-chloroplast	AAUUUCCAGUGUGAUAUAAUCACGAGGAAAGUGCCACAGA
#=GR plastid.N.olivacea-chloroplast SS  ....<<<<<>>>>>>...<<<<<.<>>...>>>>>.....

plastid.N.olivacea-chloroplast	AAGAAACCAAUCAAAUCUCCAUCGAAUGGCUCACAAGCUC
#=GR plastid.N.olivacea-chloroplast SS  ......>>>>>>>>>>>>>>.......>>>>....<<<<.

plastid.N.olivacea-chloroplast	UAGGAGAUCUUGGAUUGGGUGCAAAUGUAUUCUUGACGUG
#=GR plastid.N.olivacea-chloroplast SS  ..<<<<<<.<<.<<<<<<........>.>>>>>>>>>...

plastid.N.olivacea-chloroplast	AGUUAAGCGUCUGGUAUACCCCAGUCGGGAGCAAGAUGAG
#=GR plastid.N.olivacea-chloroplast SS  .<<<<<<<<<<.<<<..<<<<<<<<<aaaaa...>>>>>>

plastid.N.olivacea-chloroplast	GUUAGUUUAUAGAGAAUAGACCAUAGACUAAUCUAUUCCA
#=GR plastid.N.olivacea-chloroplast SS  >>>>>>>>>>...<<<<<<...<<<<<<<<<<<<....<<

plastid.N.olivacea-chloroplast	UUGCUCGAGAGGGUUCAUACAGAACUCUCCAAUCAGAUAA
#=GR plastid.N.olivacea-chloroplast SS  <<......>>>>>>>>.....<<<<<<<<.........<<

plastid.N.olivacea-chloroplast	UCUCCACACCUCUCAGGACCAAGCUAGAAACCAGUUUGAG
#=GR plastid.N.olivacea-chloroplast SS  <<<<.>>>..>>>>>>>..>>>>>>.......<<<<<<..

plastid.N.olivacea-chloroplast	CCUCUCGAGAUUUGUACCGAACCCGGCUUAUUUCUUGAG
#=GR plastid.N.olivacea-chloroplast SS	<<<...<<<<..<<<.......bbbbbbb..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS plastid.P.purpurea-chloroplast DE converted from brown dataset ct file

plastid.P.purpurea-chloroplast		AAGUAAACGUAGAUAGCUGCAGAUUUGAUUUAAUAUAGU
#=GR plastid.P.purpurea-chloroplast SS  >>>>>>>.>>>>>>>>>>.>>>>>>>>......<<.<<<

plastid.P.purpurea-chloroplast	CUGAGGAAAGUCCGGGCUCCACAAAUACAAUUUGUGCUGG
#=GR plastid.P.purpurea-chloroplast SS  <<<.....BB.BBBBBAAAA...>>>>>>.>>>.>>>>>>

plastid.P.purpurea-chloroplast	AAAAACCCCAGUGUAGGAAACUAUGAGGAACGUGCCACAG
#=GR plastid.P.purpurea-chloroplast SS  >.....<<<<<>>>>>....<<<<.<>>...>>>>>....

plastid.P.purpurea-chloroplast	AAAUAAACCGCCAGAACAAAUUAUGUUAGCUGGUAAGGGU
#=GR plastid.P.purpurea-chloroplast SS  .......>>>>>>>....>>>...<<<..<<<<<..<<..

plastid.P.purpurea-chloroplast	GCAAAGGUAAGUUAAAAGCUUACCAAAAAUACUGUAAAGU
#=GR plastid.P.purpurea-chloroplast SS  .....>>>>>>.......<<<<<<>>>>>>>>>....<<<

plastid.P.purpurea-chloroplast	AUUUGUUAGGUAAACCCCAAAAACGGAGCAAAGCGACUAA
#=GR plastid.P.purpurea-chloroplast SS  <<<<.<<.<<<..<<<<<<<<<..aaaa...>>>>.....

plastid.P.purpurea-chloroplast	AUAAAUUUUUUGUAUUUUUCAGUAGUUUAGUCUAAAAUAC
#=GR plastid.P.purpurea-chloroplast SS  .>>>>>>>>><<<<<<....<<<<<<<<<........<<<

plastid.P.purpurea-chloroplast	UGCAUGAAGUUAUUGGCAACAAUAACUCUAGAGGAAUAGC
#=GR plastid.P.purpurea-chloroplast SS  <......>>>>>>>>....<<<<<<<<..........<<<

plastid.P.purpurea-chloroplast	UAUCCUUCGAAAUACUUGUGCAAUGUAUUCGGAGAACAGA
#=GR plastid.P.purpurea-chloroplast SS  <<<<>>>>..>>>>>>>....<<.<<<<<..<<<<.....

plastid.P.purpurea-chloroplast	ACCCGGCUUAUGUAGUACUUUUUA
#=GR plastid.P.purpurea-chloroplast SS	..bbbbbbb.<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS AER.PER DE converted from Zweib's SRP dataset 

AER.PER		CGCCCCCAGCCAUGGGGGCCCCGAAGGCGCCACGCGGGG
#=GR AER.PER SS  >>>>>>>>>>>.>>>>..>>>>>......A..A.<<<<<

AER.PER	GCCAGAAGAACCCGCCCCCAGAGCUUGAAGCAGGCCAGCA
#=GR AER.PER SS  ....a..a..<<<<.>>>.....>>>>>>>>>>>>>>>..

AER.PER	AGGGCCUGCAGGGUACAAUGAACCCCGUCCCGCGGGGCCG
#=GR AER.PER SS  >>>>>>>>>>>>>>........>>>..>>>>>>>>>>>>>

AER.PER	GCGGAGGCGGGCGGCCAGCCGGAGGGCCGGCCGAAGCCGC
#=GR AER.PER SS  .>>>.>>>>>.>>>>>.>>>....<<<.<<<<<...<<<<

AER.PER	CGUAGCCGGGGCCACCCGGCGAGGCCCGGAAGGGAGCAGC
#=GR AER.PER SS  <.<..>>>>>>.....>>>>....>>>....<<<....<<

AER.PER	CGACCCCGGCCGACCGGCGUUCGCGGGGGGAACGGGGGGA
#=GR AER.PER SS  <<.<<<<<<.<<.<.<<<.<<<<<<<<<.....<<<....

AER.PER	GAAGCCCUGCAGGGUAACCCUCUGGCCUGCUUCAAACUCU
#=GR AER.PER SS  ...<<<<<<<<<<....<<<<<<<<<<<<<<<<<<.....

AER.PER	GGGAGCGGGGGCUCGGGGGCGGGCC
#=GR AER.PER SS	<.....<<<<<<<.<<<<<<<....

//
# STOCKHOLM 1.0

#=GS AGR.TUM DE converted from Zweib's SRP dataset 

AGR.TUM		GGGAGGUUGGUGGUGGACGAGCCACUCGCCAACCGGGUC
#=GR AGR.TUM SS  >>>>>>>>>>>>>>>>.>>.>>>.>>>>......>>>>.

AGR.TUM	AGGUCCGGAAGGAAGCAGCCCUAACGAGCCAGGCACGGGU
#=GR AGR.TUM SS  ...>>>....<<<....<<<<...<<<<...<<<.<.<.<

AGR.TUM	CGCCGUGCCAGCCUCCCACCUUUU
#=GR AGR.TUM SS	<<<<<<..<<<<<<<<<.......

//
# STOCKHOLM 1.0

#=GS AQU.AEO DE converted from Zweib's SRP dataset 

AQU.AEO		GCCCUGCGGCGGGACAGGGUGAACUCCCCCAGGCCCGAA
#=GR AQU.AEO SS  >>>>>>>>>>>>>>>.>>>>.....>>>.....>>>...

AQU.AEO	AGGGAGCAAGGGUAAGCCCGCCGUCCCGUGCGCAGGGU
#=GR AQU.AEO SS	.<<<.....<<<...<<<<...<<<<<<<.<<<<<<<<

//
# STOCKHOLM 1.0

#=GS ARA.TH-A DE converted from Zweib's SRP dataset 

ARA.TH-A		GUCGAGCUAAGUAACAAUAGCUUGUAACCCAUGUGGGGA
#=GR ARA.TH-A SS  >>>>>>>>>.....AA.<<<<<<....>>>>aa<<<<<<

ARA.TH-A	CAUUAAGAUGGUGGGACACUGGUUCGGUUCCUCGGAUCGG
#=GR ARA.TH-A SS  <...>>>>>>>>>>..>>.>>>>>.>>.>>..>>>.>>>>

ARA.TH-A	UUCUGAUGUGGGCAUGUUUCUGAGCUGCCCAGUCCAAGCU
#=GR ARA.TH-A SS  >>>>>>....>>.......>>>>>>>>.>>.>>>>>.>>>

ARA.TH-A	GUGAGUAAUUAGUGUUGAGUUGAGCGAAGGCUUGGCUCAU
#=GR ARA.TH-A SS  >>>>>>>>>>.>...>>>>>>>>>>....<<<<<<<<<<.

ARA.TH-A	GCAGGUUCUAGAGUCGGAGGGUAAUGCGUGAGGCUGGCUU
#=GR ARA.TH-A SS  .<.<<<<>>..<<..>>>>>......>>>....>>>....

ARA.TH-A	CACAGAGCAGCGACUACUUCCCGCUUACAGCAGUGGACGG
#=GR ARA.TH-A SS  ..<<<....<<<....<<<<<.<<<<<<<<<..<<<<<<<

ARA.TH-A	AUCACGGUUUAGCGUCGCUCAGAACCACUAUGGCCUGCUG
#=GR ARA.TH-A SS  ....<<<<<<<<..<<..<<<<<<<<.....<<.<<<..<

ARA.TH-A	GUCCGAUCUCAUAUGAACCACCAUUUU
#=GR ARA.TH-A SS	<<<.<<<..<<..<<..<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS ARA.TH-C DE converted from Zweib's SRP dataset 

ARA.TH-C		GUCGAACUCAGUAACGCGGGCUUGUGAUCCAAGUGGAGA
#=GR ARA.TH-C SS  >>>>>.>>>.....A..<<<.<<....>>>>.a<<<<<<

ARA.TH-C	CAAUAAGGGGAUGGGACGUUGGGUCGAUCUCAUUGGGCCG
#=GR ARA.TH-C SS  <...>>>>.>>>>>..>>>>>>>>.>..>>.>>>>>>.>>

ARA.TH-C	GGUUCGGGUUGGGCUAUAUUCUGGCCCGCCCAUUCCAAGU
#=GR ARA.TH-C SS  >.>>.>>...>>>.>>.....>>>>>>>.>>.>>>>>.>>

ARA.TH-C	UGGGAGUUGAGGCAUGGGCUUCGAGCGAAGGCUCGGGUCU
#=GR ARA.TH-C SS  >>>>>>..BBBBBBBBBB.BBBBBBB....bbbbbbb.bb

ARA.TH-C	CAUGUCUUCUAGAGUGGGGGAGACCGCGUGAGGCUGGUUU
#=GR ARA.TH-C SS  bbbbbbbbBB..bb.BBBBB.....BBBB....BBB....

ARA.TH-C	CACAGAGCAGCGUCCACCUCCCGCUCUUGACGGUGGAAGG
#=GR ARA.TH-C SS  ..bbb....bbbb...bbbbb.<<<<<<<<<..<<<<<<<

ARA.TH-C	AUUACGGGCCAUUGCCUUCCGAGCCCACUAUGACCCAAUA
#=GR ARA.TH-C SS  ....<<<<<<<.<<<<<<<.<<.<<......<.<<<<<<.

ARA.TH-C	AGCCGCUCCGAUUGGACCAUCACUUU
#=GR ARA.TH-C SS	<<..<<<.<<<.<<..<<<<<.<<<<

//
# STOCKHOLM 1.0

#=GS ARA.TH-G DE converted from Zweib's SRP dataset 

ARA.TH-G		GUCGAGCUAUGUAACGAGAGCUUGUAACCCAAGUGGGGA
#=GR ARA.TH-G SS  >>>>>>>>.>....A.<.<<<<<....>>>>.a<<<<<<

ARA.TH-G	CUAUAAGAUGGUGGAACACUGGAUCGGCCCACGGGUCGGA
#=GR ARA.TH-G SS  <....>>>>>>>>>..>>.>>...>>>.>>.>>>>>>>>>

ARA.TH-G	UUUGUUGUUGGCAUAGGUCUGGACUGCCCAAUCCAAGCUG
#=GR ARA.TH-G SS  >>>>>...>>>........>>>>>>>.>>..>>>>.>>>>

ARA.TH-G	UGAGUGAACCGUAUGAACCAAGCGAAGGUUUGAUCCGUAC
#=GR ARA.TH-G SS  >>>>>>>>>>>>>>>.>.>>>>>....<<<<<.<.<<<<<

ARA.TH-G	GGUUGCUAAAGGUUGAGGGUAUUGCGUUAGGCUGGCUUCA
#=GR ARA.TH-G SS  <<<<<>>..<<...>>>>......>>>....>>>......

ARA.TH-G	CAGAGCAGCGACUACCUCCCGCUCUCAGCAGUGGACGGAC
#=GR ARA.TH-G SS  <<<....<<<....<<<<..<<<<<<<<<..<<<<.<<..

ARA.TH-G	AACGGUUCGACGCCACACAAAUCCACUAUGGUCCGCUGGC
#=GR ARA.TH-G SS  ..<<<<<<<...<<<.<<<<<<<<.....<<<<<<..<<.

ARA.TH-G	UCGUAACCCGCUUGAACCACCAUUUU
#=GR ARA.TH-G SS	<<<.....<<..<<..<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS ARC.FUL DE converted from Zweib's SRP dataset 

ARC.FUL		GGUGGGCUAGGCCGGGGGGUUCGGCGUCCCCUGUAACCC
#=GR ARC.FUL SS  >>>>>>>..>>>>>>>>>>.AAAAAA<<<<<<....>>>

ARC.FUL	GAAACCGCCGAUACGCGGGGGCCGAAGCCGAGGGGAGGCC
#=GR ARC.FUL SS  >....aaaaaa....<<<<<<<<...>>>..>>...>>>>

ARC.FUL	UGUCAAGCGGGCGGCAGCGGUUCCAGGCACCGCAGAGUCC
#=GR ARC.FUL SS  >>>>..>>>>>>>>>...>>>>>>>>>>>>>......>>>

ARC.FUL	UCGUCCCGGAGGGCCGGCGGUUAUGGCCGGGCUGCCCGGA
#=GR ARC.FUL SS  >>>>>>>>>>>>>>>>.>>>.>>>>>.>>>>>.>>>>...

ARC.FUL	GGGGCUGUCCGCCAUAUUAGCCGGGGGGAACGGCCCAGGC
#=GR ARC.FUL SS  .<<<<.<<<<<<<<<<.<..>>>>>>.....>>>>....>

ARC.FUL	CCGGAAGGGAGCAGGCUAACCCCGGACGACCGGCGCUUCC
#=GR ARC.FUL SS  >>....<<<....<<<<..<<<<<<.<<.<.<<<.<<<<<

ARC.FUL	GGGGGUGCGGGGAGGAGGUGCCUGGGGCUUCAAGCCGCCC
#=GR ARC.FUL SS  <<<<...<<<<<<...<<<<<<<<<<<<<....<<<<<<<

ARC.FUL	GUAAGGCAGGUCGACCCGAGGCGUGCCCACC
#=GR ARC.FUL SS	<<..<<<<<<<<..<<...<<<..<<<<<<<

//
# STOCKHOLM 1.0

#=GS BAC.ALC DE converted from Zweib's SRP dataset 

BAC.ALC		UUUGCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACU
#=GR BAC.ALC SS  ..>>>>>>>>..>>.AAAA.A.>>>>>>a.aaaa...>>

BAC.ALC	CGCAAUCCGCUAUAGCAGGCUGAAUCCCUUCUAGAGGUUU
#=GR BAC.ALC SS  .>>...<<<<<<..<<.<<<<.....>>>>>>...>>>>.

BAC.ALC	UGUCACCGUAGGCUCUGCCCUAAGUAAGUGGUGUUGACGU
#=GR BAC.ALC SS  >>>>>>..>.>>...>>.>>>.>>>>.>>>>>......>>

BAC.ALC	UGGGUUCUACGCAACGAAAACCCACGAACCCUGUCAGGUC
#=GR BAC.ALC SS  >>.>>>>>>>>>>>>>>>...BBBB.....BBBB....BB

BAC.ALC	CGGAAGGAAGCAGCAGUAAGUGGCCCCUUUCGUGUGCCGU
#=GR BAC.ALC SS  B....bbb....bbbb...bbbb....<<<<<<.<<<.<<

BAC.ALC	AGAGUCGCUGGGCCGAGCUAACUGCUCAGGUAACGCUAGG
#=GR BAC.ALC SS  <<<<...<<.<.<...<<<.<<<<<<.<<<...<<<<.<.

BAC.ALC	GUGGCAUGAUCGACAGAAGGUGCACGGUA
#=GR BAC.ALC SS	<<<<<<.<<<<...<<<<<<.<<<<<<<<

//
# STOCKHOLM 1.0

#=GS BAC.BRE DE converted from Zweib's SRP dataset 

BAC.BRE		UCUACCGUGCUAGACGGGGAGGUAGCGGUGCCCUGUAAC
#=GR BAC.BRE SS  ..>>>>>>>>.>.>>>>>>.>.A.AAAA<.<<<<....>

BAC.BRE	CUGCAAUCCGCAAUAGCCCAGGUGUGAAUUCCUAUCCUAG
#=GR BAC.BRE SS  ..>....aaaa.a....<..<<<.<.....>>>>>>...>

BAC.BRE	GUUUUCUUAUGUGAGGCUGCCGUUGAUGGCGGCGGUGUUG
#=GR BAC.BRE SS  >>..>>>>>>.>>>>..>>..>>>.>>>>.>>>>>>....

BAC.BRE	AGGAGCGGGUCCUGUGCAACGCGAACCCAUGAACCUGGUC
#=GR BAC.BRE SS  .>>>>>>>>>>>>>>>>>>>>>>>>.>>>>.....>>>>.

BAC.BRE	AGGUCCGGAAGGAAGCAGCCAUAAGUGGAUCAUCGCGUGU
#=GR BAC.BRE SS  ...>>>....<<<....<<<<...<<<<.<..<<<<<<.<

BAC.BRE	GCCGCAGGGUAGCCUGCUCUGAGCUGCUACCAUAAGUAAC
#=GR BAC.BRE SS  <<.<<<<<<...<<<<<<<<..<<<<<<.<<<<.<<<..<

BAC.BRE	GCUCGGAUAAGGAUUAUCGAAGAUAGGUGCACGGUA
#=GR BAC.BRE SS	<<<<<.<<<<<.<..<<<...<<<<<<.<<<<<<<<

//
# STOCKHOLM 1.0

#=GS BOR.BUR DE converted from Zweib's SRP dataset 

BOR.BUR		UGGGUUCGAAUCCCAUUCUCUCCGAUUCCUAGGACCCGU
#=GR BOR.BUR SS  ..................>.>..>>>>>>>>>>>>.>>>

BOR.BUR	ACUAUCAAGUAUUGCUGAAUCCCGUCAGGACUGGAAGGUA
#=GR BOR.BUR SS  >>>>>>>>>.>>>>>>.....>>>>....>>>....<<<.

BOR.BUR	GCAGCGGUAAGCGAUUUUUUUGAUGAGUACGUAAGUCUUA
#=GR BOR.BUR SS  ...<<<<..<<<<<<...<<<<<<.<<<<<<...<<<<<<

BOR.BUR	GGUUUAAUUUUGAACCCAAAUGCAAUGUUUUGCUUU
#=GR BOR.BUR SS	<<...<<<<..<.<......................

//
# STOCKHOLM 1.0

#=GS BUC.APH DE converted from Zweib's SRP dataset 

BUC.APH		GGAGAUUUCUGUUAGUCCUAAACACUGUUAAAUUGAAUA
#=GR BUC.APH SS  >>.>..>>>>>>>>>>>.>>>>>>>>>....>>>>>...

BUC.APH	AUUGGUCAGAUCUGGAAAGAAGCAGCCAAAUCAAUCGAUA
#=GR BUC.APH SS  ..>>>>....>>>....<<<....<<<<..<<<<<.....

BUC.APH	CAGGUGUUUUGAUAUAGCUAACAGAAUCUCCUAUA
#=GR BUC.APH SS	<<<.<<<.<<<....<<<<<<<<<<<..<.<<...

//
# STOCKHOLM 1.0

#=GS CAE.BRI DE converted from Zweib's SRP dataset 

CAE.BRI		ACCGGGUGUCGUGGCGGGCGCCUGUGAGUCAGCUUCUUG
#=GR CAE.BRI SS  >>>>>>>>>>A.AAA.<<<<<<<....>>>.aaa.a..<

CAE.BRI	ACGGUAGACAAGUGUGGAUGGAGUGAAGGGAGGAGUCCUG
#=GR CAE.BRI SS  <<<<<.>>>>>>>>....>>>>>...>>>>>>>....>>>

CAE.BRI	UGGGUGUUGUCGGCAACGGCGACCGAGCGUCCGUGCCAAG
#=GR CAE.BRI SS  >>>>>>..>>..>>>>>..>...>>>>>>>>>..>>>>.>

CAE.BRI	CGCUGCGUCGCCAGGGGUCUCCGGUCGGAAGGCUGGCGGU
#=GR CAE.BRI SS  >>>>>>>>>>>>.>>>>>>.>>>>>>....<<<<<<.<<<

CAE.BRI	CCCGGGCGCAUAAGGAGUGGUGCACGGCUCAGGGCCGAAA
#=GR CAE.BRI SS  <<<.<<<<>.....<.>>>>>.....>>>....>>>....

CAE.BRI	GGCAGCAGGCAAAAGCCACCGCGCGGUGCAGUGGCCGGAU
#=GR CAE.BRI SS  <<<....<<<....<<<<<.<<<<<<<<<..<<<<.<<<.

CAE.BRI	AGCGCUUGUGAGUUGUCGCUCGCCCACAGCCUCUCUGAUA
#=GR CAE.BRI SS  ..<<<<<<.<.<<<<<.<<.<<<<<<<<<<<<<<<<....

CAE.BRI	CCUUCAGACCACUUGUCAUU
#=GR CAE.BRI SS	.<<<<<...<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS CAM.JEJ DE converted from Zweib's SRP dataset 

CAM.JEJ		AGCCUUUUCUUAGACCUGUGCAAUGCUAUUUUUAAGCAC
#=GR CAM.JEJ SS  >>>>>>>>>>>>>>.>>>>>>>>>>>>>...>>>>>...

CAM.JEJ	CGCUUCAGGGUGGGAACACAGCAGAGCACUUGAUUUUAGU
#=GR CAM.JEJ SS  .>>>>....>>>....<<<....<<<<.<<<<<....<<<

CAM.JEJ	GUGUGCCGCAGUUAUCUGGGGAAGGGUUA
#=GR CAM.JEJ SS	<<.<<<<<<<<...<<<<<<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS CAN.SPE DE converted from Zweib's SRP dataset 

CAN.SPE		GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUC
#=GR CAN.SPE SS  >>>>>>>>>>AAAAA.<<<<<<<....>>>>.aaaaa..

CAN.SPE	GGGAGGCUGAGGCAGGAGGAUCGCUUGAGCCCAGGAGUUC
#=GR CAN.SPE SS  <<<<<<<.>>>>>.>>....>>>>>...>>.>>>>....>

CAN.SPE	UGGGCUGCAGUGCGCUAUGCCGAUCGGGUGUCCGCACUAA
#=GR CAN.SPE SS  >>>>.>>>>>>>.>>>>>..>...>>>>>>>>>.>>>>>.

CAN.SPE	GUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACC
#=GR CAN.SPE SS  >.>>>>>>>>>>>.>>>>>..>>>>>>....<<<<<<..<

CAN.SPE	ACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGA
#=GR CAN.SPE SS  <<<<.<<<<>>...<<.>>>>>.....>>>>....>>>..

CAN.SPE	AACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGG
#=GR CAN.SPE SS  ..<<<....<<<<...<<<<<.<<<<<<<.<..<<<<<<<

CAN.SPE	AUCGCGCCUGUGAAUAGCCACUGCACUCCAGCCUGUGCAA
#=GR CAN.SPE SS  <...<<<<<<.<.<<<<<<<<<<<<.<<<<<<<<<.<<..

CAN.SPE	CAUAGCGAGACCCCGUCUCU
#=GR CAN.SPE SS	...<<<<<...<<.<<<<<.

//
# STOCKHOLM 1.0

#=GS CAU.CRE DE converted from Zweib's SRP dataset 

CAU.CRE		GGAGAUCGGCGCGGACGGAGUCCUCGCCAACCUGGUCAG
#=GR CAU.CRE SS  >>>>>>>>>.>>>>.>>>>>..>>>>......>>>>...

CAU.CRE	GGCCGAGAGGCAGCAGCCACAACGAGAUCACCUCUGGGUC
#=GR CAU.CRE SS  .>>>....<<<....<<<<...<<<<.....<<<<.<.<<

CAU.CRE	GUCUGCCGGUCUCCACCUCAUUUUCCUCGAAAUU
#=GR CAU.CRE SS	<<...<<<<<<<<<....................

//
# STOCKHOLM 1.0

#=GS CHL.MUR DE converted from Zweib's SRP dataset 

CHL.MUR		GUAAGUCGGGGACCUCUUAAGAUGAGAGACUUCUGAACC
#=GR CHL.MUR SS  >>>>>>>>>>>>.>>>>>.>>>>>>>>>..>>>>.....

CHL.MUR	GGGUCAGGAUCGGAAGAUAGCAGCCCUAAGGAAAGGCCUU
#=GR CHL.MUR SS  >>>>....>>>....<<<....<<<<...<<<<....<<<

CHL.MUR	UUGUGCUAAGAGUCUUCUCUGACUUAC
#=GR CHL.MUR SS	<<<<.<<<<<<<...<<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS CHL.PNE DE converted from Zweib's SRP dataset 

CHL.PNE		GUAAGUUGGGGGCCUUUUAAGAGAAGGAACCUGCGAAUC
#=GR CHL.PNE SS  >>>>>>>>>>>>.>>>>>.>>>>>>>>>>.>>.>.....

CHL.PNE	GGGUCAGGACUGGAAGGUAGCAGCCCUAAGGAGAGUUUUC
#=GR CHL.PNE SS  >>>>....>>>....<<<....<<<<...<.<<...<<<<

CHL.PNE	UUUUGCUAAAAGAAUGUUCUCCAACUUACUC
#=GR CHL.PNE SS	<<<<.<<<<<<<.....<<<<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS CHL.TEP DE converted from Zweib's SRP dataset 

CHL.TEP		GGAGAGUAAGUCCUAUACAGCAUUCUCUUGCCCAACCAU
#=GR CHL.TEP SS  >>>>>>>>>>>.>>>>...>.>>.>.>>...>>....>>

CHL.TEP	GUCAGGUCCGGAAGGAAGCAGCAUCCGGUAAUGUGAGUGC
#=GR CHL.TEP SS  >>....>>>....<<<....<<<<..<<.......<<.<.

CHL.TEP	GUGAUAUAGUCAGCUUGCUCUCCUUUU
#=GR CHL.TEP SS	<<..<<<<<...<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS CIN.HYB DE converted from Zweib's SRP dataset 

CIN.HYB		ACCGGGCUUGGUAACGCUAGUCUAUAACUCAAGUGAGGG
#=GR CIN.HYB SS  >>>>>>>>.>....A.<.<<<<<....>>>>.a<<<<<<

CIN.HYB	UAUCAAAGUGGUUGAACUUUGAGCUUGGCUUAGCUAGUUG
#=GR CIN.HYB SS  <....>>>>>>.>>..>>>>>.>>>.>.>>>>>.......

CIN.HYB	GGUCUGUAGACACCGCACCUGGCUUGCCCGUUCCAAGUCG
#=GR CIN.HYB SS  >>>>>>..>>>>>.....>>>>>>>>.>>.>>>>>.>>>>

CIN.HYB	AGAGUGGGUUCAUGUUUCCUGAGCGAAGGCUCGGGUGAUG
#=GR CIN.HYB SS  >>>...BBBBBBBBBB.BBBBBBB....bbbbbbb.bbbb

CIN.HYB	UGAGCUUUAGAAUCGGGGGGCAAUGCGUUAGGCUGGUUUC
#=GR CIN.HYB SS  bbbbbbBB..bb..BBBBB......BBB....BBB.....

CIN.HYB	ACAGAGCUGCGAAAACCUCUACCUCUCGACUGUGGAAGGA
#=GR CIN.HYB SS  .bbb....bbb....bbbbb..<<<<<<<<..<<<<<<<.

CIN.HYB	UUACAAGCCGGAGUGUCUUAGGCUCAUAUAACCAGCCUGG
#=GR CIN.HYB SS  ...<<<<<<<<.<<<<<.<<<<<<............<<<<

CIN.HYB	CUAGCCCAACAGGACACCCAUUU
#=GR CIN.HYB SS	<.<<<.<<<.<<..<<.<<<<<<

//
# STOCKHOLM 1.0

#=GS CLO.ACE DE converted from Zweib's SRP dataset 

CLO.ACE		GUGCUAGACGGGGAGUUAGCGGUGCCUUGUACCUGCAAU
#=GR CLO.ACE SS  >>>>..>>>AAAA.A.>>>>>>a.aaaa...>>>>>...

CLO.ACE	CCGCUGUAGCAGGGUUGAAUUCCUUGUUUGAGGCUAUAAU
#=GR CLO.ACE SS  <<<<<<..<<<<<<<<.....>>>>>.....>>>.>>>>>

CLO.ACE	UUGUGGGGUUUGCCUCAUCUUGGUCAAUGUUGAGAAUUGG
#=GR CLO.ACE SS  >>>>>>>...>>.>>>>>>>..>>>>>>.....>>>>>>>

CLO.ACE	GUCCCACGCAACGGAAAUUCAUGAACUCCGUCAGGUCCGG
#=GR CLO.ACE SS  >..>>>>>>>>>>>>>.>>>>>.....>>>>....>>>..

CLO.ACE	AAGGAAGCAGCGGUAAGUGAAAUCUUCCGUGUGCCGUGGA
#=GR CLO.ACE SS  ..<<<....<<<<...<<<<<...<<<<<<.<<<.<<<<.

CLO.ACE	UAAAUCUGAUUUGAGUUGACCAGGUGAGUAACACUCAUAG
#=GR CLO.ACE SS  ....<<<<<<<<..<<<<<<.<<<<<<<...<<<<<<<<<

CLO.ACE	AUUAUUGUCGAUUCAAGGUGCAC
#=GR CLO.ACE SS	<<<<<.<<<....<<<<<.<<<<

//
# STOCKHOLM 1.0

#=GS CLO.PER DE converted from Zweib's SRP dataset 

CLO.PER		GCCGUGCUAGAUGGGGAGUUAGCGGUGCCCUGUAACCUG
#=GR CLO.PER SS  >>>>>>>..>>>AAAA.A.>>>>>>a.aaaa....>>>>

CLO.PER	CAAUCCGCUACAGCAGGAUCGAAGUCCUCAUAGAGGCUCU
#=GR CLO.PER SS  >...<<<<<<..<<<<<<<<.....>>>>>>...>>>..>

CLO.PER	AACUUGUGGAGUCUGCCCUAUGUAAGUGGUGUUGAGAGUU
#=GR CLO.PER SS  >>>>>>>>>>...>>.>>>>>>>>.>>>>>.....>>>>>

CLO.PER	GGGCCCCACGCAAUGGAAACCUGUGAACCUCGUCAGGUCC
#=GR CLO.PER SS  >>>..>>>>>>>>>>>>>>.>>>>.....>>>>....>>>

CLO.PER	GGAAGGAAGCAGCGAUAAGCAGUCAUUUUCAUGUGCCGUG
#=GR CLO.PER SS  ....<<<....<<<<...<<<<...<<<<<<<.<<<.<<<

CLO.PER	GAUACGUCUGGCUUGAGCUAACUGCAUAGGUAACGUUCAU
#=GR CLO.PER SS  <.....<<<<<<<<..<<<.<<<<<<<<<<...<<<<<<<

CLO.PER	AAGUUAUUGUCGAAGUGAGGUGCACGGUU
#=GR CLO.PER SS	<<<<<<..<<<...<<<<<<.<<<<<<<.

//
# STOCKHOLM 1.0

#=GS DEI.RAD DE converted from Zweib's SRP dataset 

DEI.RAD		GCAUUGCUGGUGCAGCGCAGCGCGGACGCCCGAACCUGG
#=GR DEI.RAD SS  >>>>>>>>>>.>>>>>>>>.>>>>>>..>>>.....>>>

DEI.RAD	UCAGAGCCGGAAGGCAGCAGCCAUAAGGGAUGCUUUGCGG
#=GR DEI.RAD SS  >....>>>....<<<....<<<<...<<<....<<<<<<.

DEI.RAD	GUGCCGUUGCCUUCCGGCAAUGCUUUU
#=GR DEI.RAD SS	.<<<.<<<<<...<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS DRO.MEL DE converted from Zweib's SRP dataset 

DRO.MEL		GACUGGAAGGUUGGCAGCUUCUGUAAUCACGCUUCUGUG
#=GR DRO.MEL SS  >.>.>>>>>...AAA..<<<<<....>>>.aaa....<<

DRO.MEL	AGGUCUGAUUGUGGGAUGGCCUGAGGCUGGGAUCUACUGC
#=GR DRO.MEL SS  <<.<..>>>>>>>>..>>>>>...>>.>>>>.....>>>.

DRO.MEL	GUAGCGGACCAGCUCAUGUUGACGGAACGUCCGCACUAAG
#=GR DRO.MEL SS  >>>>>>...>>>.>>>>.>>..>>>.>>>>>>.>>>>>.>

DRO.MEL	CUUGCCAUCAAUAUGGGUGCCAUGGAGGAGUCCGUGGCAU
#=GR DRO.MEL SS  >>>>>>>>>>>>.>>>>>>>>>>>>>....<<<<<<<<<<

DRO.MEL	UCAGGUUGGCUAAGGAGGGAUGAACCGGGCCAGGGGUGAA
#=GR DRO.MEL SS  <<<.<<<<.>...<..>>>>>......>>>....>>>...

DRO.MEL	AACCAGCAGCCAAGAGUUCCCGUGGUAGGCAGUAGUGGGA
#=GR DRO.MEL SS  .<<<....<<<....<<<<<.<<<<<<<<<..<<<<<<<<

DRO.MEL	UAGCGUACCGGAGUGGACUGCCGUUAUCAGCCCAACCGAU
#=GR DRO.MEL SS  ...<<<.<<<<<<<<<.<<<.<<<<<<<<<<<<<.<<...

DRO.MEL	AUGGUUGGACCACAAUCUUU
#=GR DRO.MEL SS	..<<<<<..<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS ESC.COL DE converted from Zweib's SRP dataset 

ESC.COL		GGGGGCUCUGUUGGUUCUCCCGCAACGCUACUCUGUUUA
#=GR ESC.COL SS  >>>>>>>>>>>>>>>>.>>>>>>>>>>>...>>>>>>..

ESC.COL	CCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGAUGACG
#=GR ESC.COL SS  ...>>>....>>>....<<<....<<<..<<<<<<....<

ESC.COL	CGUGUGCCGGGAUGUAGCUGGCAGGGCCCCCACC
#=GR ESC.COL SS	<<<.<<<.<<<<...<<<<<<<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS FUS.NUC DE converted from Zweib's SRP dataset 

FUS.NUC		GCCCUUAGGGGAUAUGAUAUAUUAUUGUCGAACCGUGUC
#=GR FUS.NUC SS  >..>>>.>>>>>>>>>>>>>>>>...>>>.....>>>>.

FUS.NUC	AGAUCUGGAAGGAAGCAGCACUAAGAUUUAUAGUAUAUGC
#=GR FUS.NUC SS  ...>>>....<<<....<<<<...<<<....<<<<<<<.<

FUS.NUC	AUGUCUUCCUAGGGGUAUCU
#=GR FUS.NUC SS	<<<<<<<<....<<<..<..

//
# STOCKHOLM 1.0

#=GS GYN.AUR DE converted from Zweib's SRP dataset 

GYN.AUR		ACCGGGCUUGGCAACGCUUGCCUAUAACUCAAGUGAGGG
#=GR GYN.AUR SS  >>>>>>>..>....A.<..<<<<....>>>>.a<<<<<<

GYN.AUR	UAAGAAAAAGGGUUGGAAUUGAAAGGG
#=GR GYN.AUR SS	<..........................

//
# STOCKHOLM 1.0

#=GS HAE.DUC DE converted from Zweib's SRP dataset 

HAE.DUC		GGGGUAUUAUUGGUUUCUCGCAGCAGAAUUCAGCUUACU
#=GR HAE.DUC SS  >>>>>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>....

HAE.DUC	UAGUCAGGGCCGGAAGGAAGCAGCUUGGGUUGAAUUUCUG
#=GR HAE.DUC SS  .>>>.....>>....<<.....<<<..<<<<<<<.<<<<<

HAE.DUC	GGUGCCGGGAGUCGCUGGUAAUACCCCACCUUUUUGGUAA
#=GR HAE.DUC SS  ..<<<.<<<<<..<<<<<<<<<<<<<<.............

HAE.DUC	AAGGUAAUACCG
#=GR HAE.DUC SS	............

//
# STOCKHOLM 1.0

#=GS HAE.INF DE converted from Zweib's SRP dataset 

HAE.INF		GGAAACCUUCUCGGUCUCUCGCAACGGUGUCUGGUUUAC
#=GR HAE.INF SS  >>>>>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>>>...

HAE.INF	UCGGUCAGGUCCGGAAGGAAGCAGCCAAAGUCGGAAUUAC
#=GR HAE.INF SS  ..>>>....>>>....<<<....<<<..<<<<<<<..<<<

HAE.INF	UGUGUGCCGAGAAGAAGCUGGGAAGGUUUCCGCC
#=GR HAE.INF SS	<<<.<<<.<<<<....<<<<<<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS HAL.HAL DE converted from Zweib's SRP dataset 

HAL.HAL		GGACUAGGCCGGGCGGUUUGGCUCCGCCCGACACCCGUG
#=GR HAL.HAL SS  >>>>..>>>>>>>>>>..AAAAA<<<<<<....>>>>>.

HAL.HAL	AGACAGUCAUCAGCGGGGGCCGAACACCGGGCGCGUCCGA
#=GR HAL.HAL SS  ....aaaaa...<<<<<<<<<......>>>>...>>>>>.

HAL.HAL	CCGCCGCGGUCGGCCCCGGAAGCCAACGUGGAAGCCUCGU
#=GR HAL.HAL SS  >..>>.>>>>>>>.>>>>>..>>>..>......>>>>>>>

HAL.HAL	CCGUCGGGGACGGCGGUCCGCGGCGUGCGCCCGCAGGGGC
#=GR HAL.HAL SS  >>>>>>>>>>>>>>>>..>...>>>.>>>>>>....<<<<

HAL.HAL	GUUCCGUCGUGGUUCGACGGUGGCAACCCGCCAGGCACGG
#=GR HAL.HAL SS  <<.<.<<....<..<..>>>>>>....>>>>....>>>..

HAL.HAL	AAGUGAGCAGCGGACCACCGAACGCCCGUCGCUCGACGGG
#=GR HAL.HAL SS  ..<<<....<<<<.<<<<<<..<<<<.<<<.<<<<<<<<<

HAL.HAL	UCGCGGGGUGGAGAAGGCGACCGGGACUACCCGGCCGGGA
#=GR HAL.HAL SS  ...<<<<<<...<..<<<..<<<<<.....<<<<<<<<<.

HAL.HAL	ACGCCGGGCUACCCCGACUGUCCAC
#=GR HAL.HAL SS	..<.<<<<<...<<<<...<<<<..

//
# STOCKHOLM 1.0

#=GS HAL.VOL DE converted from Zweib's SRP dataset 

HAL.VOL		GGACUAGGUCGGGCAGUUAGGCCCUGCUCUUCACCCGCG
#=GR HAL.VOL SS  >>>>..>>>>>>>>>>..AAAAA<<<<<<....>>>>>.

HAL.VOL	AAAUAGGUCUUUAGCGGGGACCGAACACGGGCGCGUCCGG
#=GR HAL.VOL SS  .....aaaaa...<<<<<<<<<.....>>>>...>>>>>>

HAL.VOL	UCAGACCGGCGCGGGCCCCGGAAGCCAACGUAGAAACCUC
#=GR HAL.VOL SS  >....>>>>>>..>>.>>>>>..>>>..>......>>>>>

HAL.VOL	GUCCUUCGGGGACAGCGGUUCCGCGUACCCCUUCCGCAGG
#=GR HAL.VOL SS  >>>>>>>>>>>>>.>>>>..>>>>..>.>>>>>>>....<

HAL.VOL	GAAGGGUUCGCGCGGUUUAUCGGUGGUACCCCGCCAGGCG
#=GR HAL.VOL SS  <<<<<<.<...<<<<..<.>>>>>>>....>>>>....>>

HAL.VOL	CGGAAGCGAGCAGCGGACCAUCGGACGUGCGUCGCUCGAG
#=GR HAL.VOL SS  >....<<<....<<<<.<<<<<<<.<<<..<<<.<<<<<<

HAL.VOL	GGAUCGCGGGGUGGAGGAGGCAACCGGGAUUCCCCACGUC
#=GR HAL.VOL SS  <<<...<<<<<<...<..<<<..<<<<<.....<<.<<<<

HAL.VOL	GGAACGCCGGGCAACCUCGCUGUCCAC
#=GR HAL.VOL SS	<<...<<<<<<<...<<<<..<<<<..

//
# STOCKHOLM 1.0

#=GS HEL.PY-A DE converted from Zweib's SRP dataset 

HEL.PY-A		CUCUUAUUUAGACCUAUGCAAUAGGAUUUUAGGGUAACG
#=GR HEL.PY-A SS  >>>>>>>>>>>>.>>>.>>>>>>>>>..>>>>>>....>

HEL.PY-A	CUUCAGGGUAGGAAUACAGCAGAGUCCCCUAAUUUCUUGU
#=GR HEL.PY-A SS  >>>....>>>....<<<....<<<<.<<<<<<..<<<<<<

HEL.PY-A	GUGCCUUAGCCAUCUGAAUAGGAG
#=GR HEL.PY-A SS	.<<<..<<<...<<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS HUM.JA-A DE converted from Zweib's SRP dataset 

HUM.JA-A		GGCCUAGCAACGUGGGCCUGUAACCCAAGUGGGGGCAUG
#=GR HUM.JA-A SS  >>.>>>....A.<.<<.<<....>>>>.a<<<<.....>

HUM.JA-A	UGGGAGAUGGGACUUUGGGUCAGCCCAUUGGAUCGGGUCC
#=GR HUM.JA-A SS  .>>>>>>>>>....>>>>>>..>..>>.>>>.>>.>>>>>

HUM.JA-A	AGUGUUAGCUGCUUGCUGGUCUGCCCAUUCCAAGCCGAGA
#=GR HUM.JA-A SS  >>...>>>.>>....>>>>>>>>.>>.>>>>>.>>>>>>>

HUM.JA-A	GUUGGGCUGUGUGAUCUGGGCGAAGGCUGGGGUCGCACAG
#=GR HUM.JA-A SS  >>.>>>>>>>>>>>>>>.>>>....<<<.<<<<<<<<<<<

HUM.JA-A	CUCCUAAAGAGGAGGGCAAUGCGUGAGGCUGGUUUCACAG
#=GR HUM.JA-A SS  <<<>>..<<.>>>>>......>>>....>>>......<<<

HUM.JA-A	AGCAGCGACCACCUCCCGCUCUCGGCAGUGGAAGGAUAAC
#=GR HUM.JA-A SS  ....<<<....<<<<<.<<<<<<<<<..<<<<<<<....<

HUM.JA-A	GGGUCGGUGCUACUUGGGCCACCAUGGUCACUGCAUGCAC
#=GR HUM.JA-A SS  <<<<<<<<<<<<.<<<<<<<.....<<<<<.<<..<..<<

HUM.JA-A	UCUUAAUCAGACCAUCUCUUUU
#=GR HUM.JA-A SS	<..<<<.....<<<<<<<<<.<

//
# STOCKHOLM 1.0

#=GS LAC.LAC DE converted from Zweib's SRP dataset 

LAC.LAC		GGAGCAAUAAGUUUCUUACGAAGCGUGUCAGGACCUGAC
#=GR LAC.LAC SS  >>>>>>>>>>>>>.>.>>>.....>>>>....>>>....

LAC.LAC	GGUAGCAGCACUAAGUAUGGAGCUUAUGUGCUCUUUUU
#=GR LAC.LAC SS	<<<....<<<<...<<<.<.<<<<<<<.<<<<<<....

//
# STOCKHOLM 1.0

#=GS LEG.PNE DE converted from Zweib's SRP dataset 

LEG.PNE		GGUGACUCUAUUGGUCCCCUCGCGACGAUAGAUUGUGAA
#=GR LEG.PNE SS  >>>>>>>>>>..>>>>.>>>>>>..>>.>.>>>>>>...

LEG.PNE	CCCCGUCAGGCCCGGAAGGGAGCAGCGGUAGCAGUUGAUG
#=GR LEG.PNE SS  ..>>>>....>>>....<<<....<<<<..<<<<<<<.<<

LEG.PNE	CGGGCGCCGGGGUGUGGCUCUUAGAGUCGCCGCC
#=GR LEG.PNE SS	.....<<.<<<<.<..<<<..<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS LEI.MAJ DE converted from Zweib's SRP dataset 

LEI.MAJ		GCCGGAGCUCUGCUCUGUAACCUUCGGGGGCUAACCAGG
#=GR LEI.MAJ SS  >.>>>>>>...<<<<<....>>>...<<<<.<....>>>

LEI.MAJ	CUUAGCGGGGAGGACGUGGACCAGCGAGGGUGAUUUGCUG
#=GR LEI.MAJ SS  >>>.>>>>.>.>>.>>>>>....>>..>>>>.....>>>>

LEI.MAJ	CGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGUGUGGC
#=GR LEI.MAJ SS  >.>>..>>>>>>>.>>>>>...>>.>>>>>>>>>.>>..>

LEI.MAJ	UUGCCCCCCUGCAGAGGGUGGCGCGGGUCCGCCGUUGAAG
#=GR LEI.MAJ SS  .>>>>.>>>>....<<<<.<<<<.<.<<<<<........>

LEI.MAJ	CGAGGGAACCGGGUCAGGCCGGAAACGGAGCAGCCCACCC
#=GR LEI.MAJ SS  ...>>>....>>>>....>>>....<<<....<<<<.<<<

LEI.MAJ	CACGCACGUCCGCCGUUGCAGAAUCACACCGCGGAGCAUG
#=GR LEI.MAJ SS  ..<<<<<<.<.<<....<<<<<....<<<<<<<<<<<<.<

LEI.MAJ	UCCGCACUUGAGCCCCACGCUUCGUCGCGAAGCCUU
#=GR LEI.MAJ SS	.<...<<<<..<<.<<<<<.<<<.<<<<.<<<<<<.

//
# STOCKHOLM 1.0

#=GS LEP.COL DE converted from Zweib's SRP dataset 

LEP.COL		GCCGGAGCCUUGCUCUGUAACCUUCGGGGGCUUUCACCA
#=GR LEP.COL SS  >.>>>>>>...<<<<<....>>>...<<<<.<......>

LEP.COL	GCUGAACAGGGAGCUGUCUGGACCAGCAUAGGGUGCUUGC
#=GR LEP.COL SS  >>>..>>>>>..>>>..........>>.>>>...>.>.>>

LEP.COL	GGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGAGGC
#=GR LEP.COL SS  >>>.>>..>>>>>>>.>>>>>...>>.>>>>>>>>>>>>.

LEP.COL	CUCCGGGUGCCCCCUUGCAGAAGGGGCGCGCCCCCUCCGU
#=GR LEP.COL SS  ....>>>>>>.>>>>>....<<<.<<.<<<<<<<<<<<<>

LEP.COL	UAAAGUAGAGGAACUGGGUCAGGCCGGCAACGGAGCAGCC
#=GR LEP.COL SS  ...<>>.>>>>....>>>>....>>>....<<<....<<<

LEP.COL	CACCUCGCGCACGUCUGCCGUUGCAGAACCACACCGCGGA
#=GR LEP.COL SS  <.<<<<<<<<<<<.<.<<....<<<<<....<<<<<<<<<

LEP.COL	GCCUGUCAUCACCUGCGCCCCAGGCGAUCCUGUGAAGCUU
#=GR LEP.COL SS  <<<.<<.<.<..<<<.<<....<<<...<<<<<..<<<<.

LEP.COL	U
#=GR LEP.COL SS	.

//
# STOCKHOLM 1.0

#=GS LIS.INN DE converted from Zweib's SRP dataset 

LIS.INN		UUUGUCGUGCUAGACGGGGAGGUAGCGGCGCCCUGUAAC
#=GR LIS.INN SS  ..>>>>>>>>..>>>>>>>.>..AAAAA<.<<<<....>

LIS.INN	CCGCAAUCCGCUCUAGCGGGGUUGAAUUCCUCAUUUGAGG
#=GR LIS.INN SS  >>>>...aaaaa...<<<<<<<<.....>>>>>>>...>>

LIS.INN	CAUCGUAAUUGUUUGGUCUGCCCUUGACAAGUGGUGUUGA
#=GR LIS.INN SS  >>>..>>>>>>>>>>...>>.>>>>>>.>.>>>>>.....

LIS.INN	AGGUUGGGUCUUGCGCAAUGGGAACCUGUGAACCAUGUCA
#=GR LIS.INN SS  .>>>>>>>>>>>>>>>>>>>>>>>.>>>......>>>>..

LIS.INN	GGUCCGGAAGGAAGCAGCAUUAAUCAGUGCUUCUCAUGUG
#=GR LIS.INN SS  ..>>>....<<<....<<<<....<<<...<<<<<<<.<<

LIS.INN	CCGCGAGGUUGCCUGGCCCGAGCUAACUAUCAAGGUAACG
#=GR LIS.INN SS  <.<<<<<<...<<<<<<<...<<<.<<<.<<<<<<...<<

LIS.INN	CAGGUGAUUGCAUGUCGAGGUGAGGUGCGCGACACUAA
#=GR LIS.INN SS	<<<<<<<<<<.<<<<<..<<<<<<<.<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS LYC.ES-A DE converted from Zweib's SRP dataset 

LYC.ES-A		GGCGAGCUUAGUAACGUGGGCUUGUAAUCCAAGUGGAGA
#=GR LYC.ES-A SS  >.>>>>>>>>....A.<<<<<<<....>>>>.a<<<<<.

LYC.ES-A	CAUCAAAGUGGUUGAAUAUUGGGCUUUACCAGAAGGUUGG
#=GR LYC.ES-A SS  <...>>.>>>>>>>..>>>>>>>>..>.>>>..>>>>.>>

LYC.ES-A	GCUUGGUGGGCUUAGUUCUGGCCUGCCCUGUCCAAGCACA
#=GR LYC.ES-A SS  >>>>>>>>>>.>.....>>>>>>>>.>>..>>>>.>>>>>

LYC.ES-A	GAGUUGGAUCUCGAGGCCCAAAUGAAAAUAUGGGCUUCUU
#=GR LYC.ES-A SS  >>>>.>>>>>..>>>>>>>>.>>....<<.<<<<<<<<..

LYC.ES-A	GAUUCCUAAAGUGGGGCGGACCGCAUGAGGCUGGCUUCAC
#=GR LYC.ES-A SS  <<<<<>>..<<.>>>>>>.....>>>....>>>......<

LYC.ES-A	AGAGCAGUGAACGCUCCCGCUCUGUGCAGUGGAAGGAUAA
#=GR LYC.ES-A SS  <<....<<<..<<<<<<.<<<<<<<<<..<<<<.<<....

LYC.ES-A	UGGGUCGGUGUCUUAUCAAGUUCAGUAACGCCUAAUGGGU
#=GR LYC.ES-A SS  <<<<<<<<.<<<<.<<<<<<<<<......<<<<..<<<<.

LYC.ES-A	UGCUCCAAUAAACAACCACCUUU
#=GR LYC.ES-A SS	.<<<.<<<<<..<<<<<<<.<<.

//
# STOCKHOLM 1.0

#=GS LYC.ES-C DE converted from Zweib's SRP dataset 

LYC.ES-C		GCCGAGCUCAGUAGCGUGGGCUUGUAACUCAAGUGAGGG
#=GR LYC.ES-C SS  >>>>>>>>>>....A.<<<<<<<....>>>>.a<<<<<<

LYC.ES-C	CAUCAGUGUGGUGGAAUGUUGAACAUGCCCAGAAGGUAGG
#=GR LYC.ES-C SS  <...>>>>>>>>>>..>>>>>>>>>...>>>..>>>>>>>

LYC.ES-C	GCUUGUGUGACAAUUCUCUGGCCUGCCCUGUCCAAGCAAA
#=GR LYC.ES-C SS  >>>>>>>>>>..>....>>>>>.>>.>>..>>>>.>>>.>

LYC.ES-C	GAGUUGGGUCUUGUGGGCCAAGCGAAGGCUUGGGCUGCUG
#=GR LYC.ES-C SS  >>>>.>>>>>>.>>>>.>>>>>>....<<<<<<.<<<<.<

LYC.ES-C	GGCUCCUAAAGUGGGGUGGACUGCGUGAGGCUGGUUUCAC
#=GR LYC.ES-C SS  <<<<<>>..<<.>>>>>......>>>....>>>......<

LYC.ES-C	AGAGCAACGAAUAGCUCCCGCUCUGUGCAGUGGAAGGAUA
#=GR LYC.ES-C SS  <<....<<<....<<<<<.<<<<<.<<<..<<<<.<<...

LYC.ES-C	ACGAGCCAGUGUCAUAUAAGUUCAACGAAUGUCUGAUGGG
#=GR LYC.ES-C SS  .<<.<<<<<<.<<<<<<<<<<<<......<<<<<..<<<.

LYC.ES-C	CUGUUCUAGUUAAACUACCACAUUU
#=GR LYC.ES-C SS	.<<<<.<<<.<<..<<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS LYC.ES-F DE converted from Zweib's SRP dataset 

LYC.ES-F		GCCGAGCUUUGUAACGUGGGCUUGUAACCCGAGUGGGGG
#=GR LYC.ES-F SS  >>>>>>>>>.....A..<<<<<<....>>>>.a<<<<<<

LYC.ES-F	CAACAAUGUGGUGGAAUGUUGGGUCCAUCUUGAUGGAUGG
#=GR LYC.ES-F SS  <...>>.>>>>>>>..>>>>>>>>....>>....>>.>.>

LYC.ES-F	GCUUGAAGGGCUAAUGUUCUGGCCUGCCCUGUCCAAGCAC
#=GR LYC.ES-F SS  >>>>>>.>>>.>>.....>>>>>>>>.>>..>>>>.>>>>

LYC.ES-F	AGAGUUGGGUCAAGUGGUCUAUACGAAAGUAUAGCCACUU
#=GR LYC.ES-F SS  >>>>>.>>>>>>>>>>>.>>>>>>....<<<<<<<<<<<<

LYC.ES-F	GGCCUUUAGAGUGGGAUGGACUGCGUGAGGCUGGUUUCAC
#=GR LYC.ES-F SS  <<<<<>>..<<.>>>>>......>>>....>>>......<

LYC.ES-F	AGAGCAACGACUAGUCCCCGCUCUGUGCAGUGGAAGGAUC
#=GR LYC.ES-F SS  <<....<<<....<<<<<.<<<<<<<<<..<<<<.<<...

LYC.ES-F	ACGGGCUAGUGCUCUUUGAGUCCUAACAAAAACCUGAUAG
#=GR LYC.ES-F SS  .<<<<<<<<<<.<<<<<<<<<<........<.<<....<<

LYC.ES-F	GUUGCCUAAUUAAACCAUCACUUUU
#=GR LYC.ES-F SS	...<<<<<<.<<..<<<<<<<.<<.

//
# STOCKHOLM 1.0

#=GS LYC.ES-L DE converted from Zweib's SRP dataset 

LYC.ES-L		GUUGGGUUGACCCAGAUGGUUGGGUUCGGUAGGCUUAUA
#=GR LYC.ES-L SS  >>>>>>>.>..>>>...>>>..>>>>>>.>.>>.>....

LYC.ES-L	GUCUGGCCUGCCCUCUCCAAGCAUGGAGUUGGAUCACGUG
#=GR LYC.ES-L SS  ..>>>>>>>>.>>..>>>>.>>>>>>>>>.>>>>>>.>>>

LYC.ES-L	GCUUAGUCGAAAGACCUGGGUUGCUUGAUUCCUAAAGUGG
#=GR LYC.ES-L SS  >>>>>>>>....<<<.<<<<<<<<.<<<<<<>>..<<.>>

LYC.ES-L	GGUGGACUGCGUGAGGCUGGUUUCACAGAGCAACGAACAG
#=GR LYC.ES-L SS  >>>......>>>....>>>......<<<....<<<....<

LYC.ES-L	CUUCCGCUCUGUGCAGUGGAAGGAUAACGGGUCAGUGCUC
#=GR LYC.ES-L SS  <<<<.<<<<<<<<<..<<<<.<<....<<<<<<<<.<<<.

LYC.ES-L	AGCGAGUCCAGUUAACGCCCUGAUGGGCUGCUCCAACUAA
#=GR LYC.ES-L SS  <.<<<<<<........<<<....<<<.<.<<<.<<<<...

LYC.ES-L	ACCACCACUUU
#=GR LYC.ES-L SS	...........

//
# STOCKHOLM 1.0

#=GS MET.ACE DE converted from Zweib's SRP dataset 

MET.ACE		UGAUGAGCUAGUCCGGGUAGCCCGGCGUUACCUGUAACC
#=GR MET.ACE SS  >>>>>>>>..>>>>>>>>>>..AAAAA<<<<<<....>>

MET.ACE	CGAAAUCGCCGAUAUGCGGGGGACGAAGCCAAUGGAAGAU
#=GR MET.ACE SS  >>....aaaaa.....<<<<<<<<...>>>...>>..>.>

MET.ACE	GCGUCAAAGGGAUUCCAGCCUGUGAUCUCAACUGAGAAAC
#=GR MET.ACE SS  >.>>>...>>>>>>.>>>.>>>.>>>>>>..>>.....>>

MET.ACE	CCCGUCCUGCUUGGAUGAUGCAGGUAUGUGGACUUGCUGG
#=GR MET.ACE SS  >>>>>>>>>>..>>>>>.>>..>>>>>>.>>>>>>>.>..

MET.ACE	AAAACAGGUCCUCAUACCCUAACUGCGGAAACCGGUCGAG
#=GR MET.ACE SS  ..<.<<<<<<<.<<<<<<....>>>>>>.....>>>>...

MET.ACE	GCCCGGAAGGGAGCAGACUCACUGUGGGCAACCGUCGCUU
#=GR MET.ACE SS  .>>>....<<<....<<<<..<<<<<<.<<.<.<<<.<..

MET.ACE	GCGGGGUCGCGGGGUGGAGAAGAGAUUCCAGUCUACUGAA
#=GR MET.ACE SS  <<<<<<...<<<<<<..<<..<<<<<<.<<<....<<<.<

MET.ACE	AUCUCCCAGAUACAACGACCUGCGGUGUGCUCAUCA
#=GR MET.ACE SS	<<<<<...<<<.<<.<..<<...<<<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS MET.FER DE converted from Zweib's SRP dataset 

MET.FER		AGGCUAGGCCGGGGGGUUAGGGGUCCCCUGUAAGCGCAA
#=GR MET.FER SS  >>>>..>>>>>>>>>>.AAAAAA<<<<<<....>>>>..

MET.FER	AUCCCCUAUAUGGCGCGGCCGAAGCCCAGGAGGCGGCAAG
#=GR MET.FER SS  ..aaaaaa....<<<<<<<<...>>>>>>>>>..>>>>>>

MET.FER	ACCGCCAGACAUCGGCCUGAGGGUUAAACAAUGAAGCCUC
#=GR MET.FER SS  >>>>>>>>>>>>>>>.>>>>>>>>>>>>.>.>...>>>>>

MET.FER	GUCCCACAGGGCCACCGGUGGCGAGGGUCCAGCUGGAGGG
#=GR MET.FER SS  >.>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....<<

MET.FER	CUGGACCUAAUCGCCUUUGCUGCGGGAACGGGUCAGGCCC
#=GR MET.FER SS  <<<<<<<<..<<<<<<<..>>>>>>>...>>>>....>>>

MET.FER	GGAAGGGAGCAGCCCUACCGCAGACGGAUGGUGCUUGUGG
#=GR MET.FER SS  ....<<<....<<<<.<<<<<<<.<<<.<<<<.<<<<<<<

MET.FER	GUCAACGGGGUGGAGUCUAUAACCCUCAGAUCACCGGUGU
#=GR MET.FER SS  <....<<<<<<..<.<.<<<<<<<<<<<<...<<<<<<<<

MET.FER	CUGGUGGUCUUGUCCACUCCUGGGCGUGCCU
#=GR MET.FER SS	<<<<.<<<<<<<<<..<<<<<<<<<..<<<<

//
# STOCKHOLM 1.0

#=GS MET.JAN DE converted from Zweib's SRP dataset 

MET.JAN		GGUGUGCAUGGCUAGGCCGGGGGGUUGGGCGUCCCCUGU
#=GR MET.JAN SS  >>>>>>>>>>>>>.>>>>>>>>>>..AAAAA<<<<<<..

MET.JAN	AACCCGAAAUCGCCCUUAUGCGGGGGCCGAAAACUUGGGG
#=GR MET.JAN SS  ..>>>>....aaaaa.....<<<<<<<<.....>>>>>>>

MET.JAN	GCGGCAUGUCCUCCAGUCCUUCCUUCCCAGACUCCUCGAU
#=GR MET.JAN SS  ..>>>>>>>>>>.>>>>>>>>>>>>>>>>>>.>>>>....

MET.JAN	GAGGUCUCGUCCCGUGGGGCUCGGCGGUGGGGGAGCAUCU
#=GR MET.JAN SS  ...>>>>>>>>>>>>>>>>>.>>>>>>.>>>>>.>>>>>>

MET.JAN	CCUGUAGGGGAGAUGUAACCCCCUUUACCUGCCGAACCCC
#=GR MET.JAN SS  >>>....<<<<<<<<<...<<<<<.<.>>>>>>.....>>

MET.JAN	GCCAGGCCCGGAAGGGAGCAACGGUAGGCAGGACGUCGGC
#=GR MET.JAN SS  >.....>>>....<<<.....<<<..<<<<<<..<<<<<<

MET.JAN	GCUCACGGGGGUGCGGGACGGAGAAGGAAUCUGGGGGCGA
#=GR MET.JAN SS  .<<<<<<<<<...<<<<<<...<.<<<<.<<<<<<<...<

MET.JAN	GGGAGGACUGGAGGACAUGCCCACCCCAAGGAAGCCAUGC
#=GR MET.JAN SS  <<<<<<<<<<.<<<<<<<<<<..<<<<<<<..<<<<<<<<

MET.JAN	ACACCACUUUU
#=GR MET.JAN SS	<<<<<......

//
# STOCKHOLM 1.0

#=GS MET.KAN DE converted from Zweib's SRP dataset 

MET.KAN		GGGCUAGGCCGGCGGGCUGGCGGUCCGCUGUAACCCGAA
#=GR MET.KAN SS  >>>>..>>>>>>>>>>..AAAAA<<<<<<....>>>>..

MET.KAN	AUCCGCCUCAUGCGGGGGCCGAAGCCGAGGGGGCGGCCCG
#=GR MET.KAN SS  ..aaaaa.....<<<<<<<<...>>>>>>>>>..>>>>>>

MET.KAN	GUCCCCCGGAGUACCGGCCCCCCGGACCCGACCGAUGACC
#=GR MET.KAN SS  >>>..>>>>>>>.>>>>...>>>....>>>>>>..>..>>

MET.KAN	CUCCGGCCCCCCGGGGGCCCGGGGUGGCGGGGCCGCCGCC
#=GR MET.KAN SS  .>>.>>>>>>.>>>>>>>>..>.B.BBBBBB..BBBBBBB

MET.KAN	GGAGGGCGGCGCGCCACCGCCUUUGCCGGGGCACCGGGUC
#=GR MET.KAN SS  ....bbbbbbb..b..bbbbb.b..BBBBBB....BBBB.

MET.KAN	AGGCCCGAGAGGGAGCAGCCCACCCCGGACCCGCGGCCGC
#=GR MET.KAN SS  ...BBB....bbb....bbbb.bbbbbb..<<..<<<<.<

MET.KAN	UCGGGGGUCGCCGGAGGCAGGUCGGCCGGGGGAGUACCGG
#=GR MET.KAN SS  <<<<<<<<..<.<<.<<..<<<<<<....<<<....<<<<

MET.KAN	GCUCCGGGGGCCGGGUCCACCCCUCGGCGCGCCC
#=GR MET.KAN SS	<<<<<<<.<<<<<<<<<..<<<<<<<<<..<<<<

//
# STOCKHOLM 1.0

#=GS MET.TH-A DE converted from Zweib's SRP dataset 

MET.TH-A		UGGGCUAGACCGGAGGGUUAGGGGUCCUCUGUAAGCGCA
#=GR MET.TH-A SS  >>>>>..>>>>>>>>>>.AAAAAA<<<<<<....>>>>.

MET.TH-A	AAUCCCCUAUACGGCGCGGUCGAAGUUCAGGGGACGGCUG
#=GR MET.TH-A SS  ...aaaaaa....<<<<<<<<...>>>>>>>>>..>>>.>

MET.TH-A	AUCGACUGUUUAUCGGCCCUGCUGAUUGGUGUCGAAGCCU
#=GR MET.TH-A SS  >>>..>>>>>>>>>>>.>>>>>>>>>>>>>......>>>>

MET.TH-A	CGUCCCGCAGGAUCAGUGGUGAUGGGGCCCUGACUGGAGG
#=GR MET.TH-A SS  >>..>>>>>>>>>>>>>>>.>>>>>.>>>>>>>>>....<

MET.TH-A	GUCAGGGUAAACCAUCUUAGUCAUGGGAACGGGUCAGGCC
#=GR MET.TH-A SS  <<<<<<<<...<<<<<.<..>>>>>>....>>>>....>>

MET.TH-A	UGGAAAGGAGCAGCCCUACCAUGGACAGCUGAUGCUUGCG
#=GR MET.TH-A SS  >....<<<....<<<<..<<<<<<.<<.<<<<<.<<<<<<

MET.TH-A	GAUUAACGGGGUGGAGCCAGUCAGCGGGAUCACCGGUAAA
#=GR MET.TH-A SS  <.....<<<<<<...<<<<<<<<<<<<<....<<<<<<<<

MET.TH-A	UGGAAGGUCUGUCAACCCCUGAACGUGCCCA
#=GR MET.TH-A SS	<<<..<<<<.<<<..<<<<<<<<<..<<<<<

//
# STOCKHOLM 1.0

#=GS MET.VOL DE converted from Zweib's SRP dataset 

MET.VOL		UGGCUAGGCUGGGAGGUUAGGCGUCUCCUGUAACUUGAA
#=GR MET.VOL SS  >>>>>.>>>>>>>>>>..AAAAA<<<<<<....>>>>..

MET.VOL	AUCGCCUUUGCGAGAGCCGAAAACUUGGGGGCGGCAUAAG
#=GR MET.VOL SS  ..aaaaa...<<<<<<<<.....>>>>>>>..>>>>.>>>

MET.VOL	UUCCCAAAUUUCAUUCUUAAUUAGUAUGUCGACGUUUCGU
#=GR MET.VOL SS  >..>>>>>>>>>>>>>>>>>>>>>>>>......>>>>>>>

MET.VOL	CCUUUGGGGUAAGAUGGUAAGAGACUCUCUUUCUUAAGAA
#=GR MET.VOL SS  >>>>>>>>>>..>>.>>.>>>>>...>>>>>>>....<<<

MET.VOL	AGAGUCAAACUCUUUUCGUAUUUCGAAACCCGCCAGGCCC
#=GR MET.VOL SS  <<<<.....<<<<<.<...>.>>>.....>>>.....>>>

MET.VOL	GGAAGGGAGCAACGGUAGAAUUUACUUCGACGCUCAAGGG
#=GR MET.VOL SS  ....<<<.....<<<..<<<.<..<.<<.<<.<<<<<<<<

MET.VOL	GUAGCGGGGCUGAGUACUAAUUAAGGCAAAAUGAGAUUUG
#=GR MET.VOL SS  <...<<<<<<...<<<<<<<<<<<<<....<<<<<<<<<<

MET.VOL	GUGCUUUUGUCCACCCCAAGGAAGCCA
#=GR MET.VOL SS	<.<<<<.<<<<..<<<<<<<..<<<<<

//
# STOCKHOLM 1.0

#=GS MIC.LUT DE converted from Zweib's SRP dataset 

MIC.LUT		GGCCCCUACGUGGUGUCAUCUCGCUGAACUUCCCCCAGG
#=GR MIC.LUT SS  >>>>>.>>>>>>.>>>>>.>>>>>>......>>>.....

MIC.LUT	ACCGGAAGGUAGCAAGGGUAGGUGGGCUCUGGCAGGUGCG
#=GR MIC.LUT SS  >>>....<<<.....<<<..<<<<<<...<<<<<..<<<<

MIC.LUT	UGAGGGGUCUUCACGUUU
#=GR MIC.LUT SS	<<.<<<.<<.........

//
# STOCKHOLM 1.0

#=GS MUS.MU-B DE converted from Zweib's SRP dataset 

MUS.MU-B		GAGCCGGGUGUGGUGGCGCACACCUUUAAUCCCAGCACU
#=GR MUS.MU-B SS  ..>>>>>>>>>>AA.AA.<<<<<<<....>>>>.aaaa.

MUS.MU-B	CGGGAGGCAGAGGCAGGCGGAUUUCUGAGUUCGAGGCCAG
#=GR MUS.MU-B SS  .<<<<<<<.>>>>>>>>....>>>>>.>>>>>..>.....

MUS.MU-B	CCUGGUCUACAAAGUGAGCUCCAGGACAGCCAGGGCUACA
#=GR MUS.MU-B SS  >....>.................<....<<..<<<<<...

MUS.MU-B	CAGAGAAACCCUGUCUC
#=GR MUS.MU-B SS	.<<<<<...<<<<<<<<

//
# STOCKHOLM 1.0

#=GS MYC.CAP DE converted from Zweib's SRP dataset 

MYC.CAP		AGCCGCGAUAAGAAUAACAUCUGAAUGAGUUAGGACCGG
#=GR MYC.CAP SS  >>>>>>>>>>>>>>>>..>>>>>...>>>>....>>>..

MYC.CAP	AAGGUAGCAGCUAUAAGGAAAAGUGUUCUGUAUUGCGGUU
#=GR MYC.CAP SS	..<<<....<<<<..<<<<<...<<<<<<.<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS MYC.GEN DE converted from Zweib's SRP dataset 

MYC.GEN		AGAACCAUCACAUCAUUAGAGUCGAAUCAUGUCAGGCCA
#=GR MYC.GEN SS  >>>>>>>>>>>>>>>>>.>>>>>.....>>>>....>>>

MYC.GEN	GAAAUGGAGCAGCAUUAAGACUUGUCAGUGAGUGUGAUGG
#=GR MYC.GEN SS  ....<<<....<<<<...<<<<<...<<<<<.<<<<<<<<

MYC.GEN	UUUU
#=GR MYC.GEN SS	<<<<

//
# STOCKHOLM 1.0

#=GS MYC.LEP DE converted from Zweib's SRP dataset 

MYC.LEP		GGACCCCGCGCGGCGUCUAUCCUGUGAACUCCCCUAGGG
#=GR MYC.LEP SS  >>>>>>>>>>>>>>>.....>>>>>.....>>>.....>

MYC.LEP	CCGGAAGGCAGCAAGGGUCAAUGGGCUCUGUCGGGUGCGC
#=GR MYC.LEP SS  >>....<<<.....<<<...<<<<<...<<<<<....<<<

MYC.LEP	GGGGUCC
#=GR MYC.LEP SS	<<<<<<<

//
# STOCKHOLM 1.0

#=GS MYC.PUL DE converted from Zweib's SRP dataset 

MYC.PUL		GCCUUUAGAACAAUAACCUCAUAACCCGGUCAGGACAGA
#=GR MYC.PUL SS  >>>>..>>>>>>>>>..>>>>.....>>>.....>>>..

MYC.PUL	AAUGGAGCAUCCGCAUUGAGAAGUGUUGUGUCUUUAGGUC
#=GR MYC.PUL SS  ..<<<.....<<<...<<<<...<<<<<<.<<<..<<<<.

MYC.PUL	UUUU
#=GR MYC.PUL SS	....

//
# STOCKHOLM 1.0

#=GS NEI.GON DE converted from Zweib's SRP dataset 

NEI.GON		GCGGGUCUCCCCGCAUGGCAAAUCGGAACACCGGGUCAG
#=GR NEI.GON SS  >>>>>>>>>>>>>>>>>>>..>>>>>>.....>>>>...

NEI.GON	GGGCGGAAGCCAGCAGCCCACUCCGAUGCGCCAGUGCCGG
#=GR NEI.GON SS  .>>>....<<<....<<<<..<<<<<<..<<<<.<<<.<<

NEI.GON	GGGUUUGGUCCGC
#=GR NEI.GON SS	<<<...<<<<<<<

//
# STOCKHOLM 1.0

#=GS NOS.SPE DE converted from Zweib's SRP dataset 

NOS.SPE		GACCUGGAUCUAUGCGACUGCAACGCCUAAACCUUGUCA
#=GR NOS.SPE SS  >>>>>>>>.>>>>>>.>>>>>>>..>>>.....>>>>..

NOS.SPE	GGACCGGAAGGUAGCAGCAACACAGGAUGCUUGUGGUAGG
#=GR NOS.SPE SS  ..>>>....<<<....<<<<...<<<....<<<<<<<..<

NOS.SPE	CGUAGUCUCCGGGUCGCCCUAUU
#=GR NOS.SPE SS	<<<<<..<<<<<<<<........

//
# STOCKHOLM 1.0

#=GS ORY.SA-A DE converted from Zweib's SRP dataset 

ORY.SA-A		GCCGAGCUCAGUAGCGAGAGCCUGUAACCCAAGCGGGGG
#=GR ORY.SA-A SS  >>>>.>>>>.....A..<<<<.<....>>>..a.<<<<<

ORY.SA-A	CACUAAAGGUGGCUGCGGAUGUUUGGUGUGGAUUCUGAUC
#=GR ORY.SA-A SS  <...>>>>>>>>..>....>>.>>>....>>>.....>>.

ORY.SA-A	CUGGGCCCCAUGUUGUUGUAAUCUUGCUGGCUUGCCCGUU
#=GR ORY.SA-A SS  >>>>>>>.....>>>............>>>>>>>....>>

ORY.SA-A	CCAAGUUGCGUAGUGGGCCGGAGGGGCUUUGGCGAAGGCC
#=GR ORY.SA-A SS  >>>.>.>>.>.>>>>>>..>>.>>>>>...>>>....<<<

ORY.SA-A	UUUGCUUUGCUUCUCCGGCCCUAAAGUGGCAGGCACAGCG
#=GR ORY.SA-A SS  ...<<<<<.<<..<<<....>>..<<.>>>>>......>>

ORY.SA-A	UGAGGCUGGCUUCACAGAGCAGCGAUCACUGCCCGCUUCC
#=GR ORY.SA-A SS  >....>>>......<<<....<<<....<<<<<.><<.<<

ORY.SA-A	AUCGGUGGAAGGAUAACAGGCUGCUGCACCUUGGGCCCGC
#=GR ORY.SA-A SS  <.<..<<<<<<<....<<<<<<<........<<<......

ORY.SA-A	UUCUGGCCCAGAGUCCCUCUACAACAGACCACCAUCUUU
#=GR ORY.SA-A SS	....<<<<<<<.<<...<<<.<<<<<..<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS ORY.SA-B DE converted from Zweib's SRP dataset 

ORY.SA-B		GCCGAGCCAGGUAGCGUUGGCUUGUCACCCGAGCGGGGG
#=GR ORY.SA-B SS  >>>>>>>>>>....A.<<<<<<<....>>>>.a<<<<<<

ORY.SA-B	CAAUAAGGUGGUGUUGGAUGCCUGGUCGUUUGCGCUUGGG
#=GR ORY.SA-B SS  <...>>>>>>>>>.....>>>>.....>...>>.>>>.>>

ORY.SA-B	GUCUGCGCCUGUGGUUUGCACUAUGCGGCCCGCCCGUUCC
#=GR ORY.SA-B SS  >>>.>.>>>.>....>>>......>>>>>>>>....>>>>

ORY.SA-B	AAGUUGCGUAGCGUGUGUGGGGCGCCUGGGCGAAGGCUCG
#=GR ORY.SA-B SS  >.>>>>.>.>>>..>>>>>>>>>>>.>>>>>....<<<<<

ORY.SA-B	AGCGUCCCUGCACCUAGAGUGGCGGGUAUUGCGUGAGGCU
#=GR ORY.SA-B SS  .<<<<<<.<<<<<>>..<<.>>>>>......>>>....>>

ORY.SA-B	GGUUUCACAGAGCAGCGAGUACCGCCCGCUUCCAACGGUG
#=GR ORY.SA-B SS  >......<<<....<<<....<<<<<.><<.<<<<<..<<

ORY.SA-B	GAAGGAUAACGGGCCGCUGCAGCCCUGGCCCGCUUCCGGC
#=GR ORY.SA-B SS  <<<<<....<<<<<<<<..<<<..<.<<<.<......<<<

ORY.SA-B	CCAAGUGCCUUCCAUGGCAGACCACCACCUUU
#=GR ORY.SA-B SS	<<<<<.<<...<...<<<<...<<<<<<<<<.

//
# STOCKHOLM 1.0

#=GS PER.AME DE converted from Zweib's SRP dataset 

PER.AME		GAUCCGUAACGCGAGCUUAUAACUCGAGCGGGGGCUAUA
#=GR PER.AME SS  >.>>.....A..<<.<......>>>>.a<<<<.......

PER.AME	AAGGUGGUGUGGAACGAGCUGACUCGACCUGCCGGGUUGG
#=GR PER.AME SS  ........................................

PER.AME	GCCAGGGACUGCGGUGCUGGCUCGCCCGUUCCAAGUCGGG
#=GR PER.AME SS  ........................................

PER.AME	UAGUGGGCCAUGUGGCUUGGGCGAAGGCCUGGGUUUCUUG
#=GR PER.AME SS  .....>>>>>.>.>>>>>>>>>....<<<<<<<.<<.<<<

PER.AME	GCC
#=GR PER.AME SS	<<<

//
# STOCKHOLM 1.0

#=GS PRO.MA-A DE converted from Zweib's SRP dataset 

PRO.MA-A		GACUCGGGCCCAUGCGGCUUCGACGCCUAAAUCUGGUCA
#=GR PRO.MA-A SS  >>>>>>>>.>>>>>>>>.>>>>>..>>>.....>>>>..

PRO.MA-A	GGACCGGAAGGUAGCAGCCACAAGGGAUGCUUGAAUCUGG
#=GR PRO.MA-A SS  ..>>>....<<<....<<<<...<<<....<<<<<.<<.<

PRO.MA-A	CGUGGAUUCCGGGUCACCUAAA
#=GR PRO.MA-A SS	<<<<<..<<<<<<<<.......

//
# STOCKHOLM 1.0

#=GS PSE.AER DE converted from Zweib's SRP dataset 

PSE.AER		GGUGGCCCUGUCGGUCCCCCCGCAACGAUUACCCGUCAA
#=GR PSE.AER SS  >>>>>>>>>>>>>>>>.>>>>>>>>>>>>..>>>>>...

PSE.AER	CCUGGUCAGGUCCGGAAGGAAGCAGCCACAGCGGGAACAU
#=GR PSE.AER SS  ..>>>>....>>>....<<<....<<<<..<<<<<...<<

PSE.AER	CGUGUGCCGGGGUGUGGCUGGCGGGGCCGCCUCC
#=GR PSE.AER SS	<<<.<<<.<<<<.<..<<<<<<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS PYR.ABY DE converted from Zweib's SRP dataset 

PYR.ABY		CGUCCCCUGUAACCGGAAACCGCCGAUAUGCCGGGGCCG
#=GR PYR.ABY SS  AA..........>>>>....aa........<<<<.....

PYR.ABY	AAGCCCGAGGGGCGGUUCCCGAAGCCGCCUCCGGAAGCCA
#=GR PYR.ABY SS  ..>>>>>>>>>..>>..>>>...>>>>>>>>>....>>>>

PYR.ABY	GGGCCGAACGAUGAGUCCUCGUCCCGCGGGGUGCCCGGUG
#=GR PYR.ABY SS  >>>>>.>.>.....>>>>>>>>>>>>>>>>>>>>>>>>.>

PYR.ABY	GGGGAGGCACGGCUGAAGGGCCGUGCUAACCCCCUUUAGG
#=GR PYR.ABY SS  >>>>.>>>>>>>>>....<<<<<<<<<..<<<<<.<..>>

PYR.ABY	CCCCAAACCCCGCAAGGCCCGGAAGGGAGCAGCGGUAGGG
#=GR PYR.ABY SS  >>>>.....>>>>....>>>....<<<....<<<<..<<<

PYR.ABY	GCCACGGAGCACGCUCGCGGGGGUGCGGGGAUGAGGUAGG
#=GR PYR.ABY SS  <<<.<<<.<<<<.<<<<<<<<<...<<<<<<<..<.<.<<

PYR.ABY	CCCUGGUGAAAGGAGGCGGUGGAGGGUUCCCACCCUCGGG
#=GR PYR.ABY SS  <<<<<<<....<<<<<<<<<...<<<..<<..<<<<<<<<

PYR.ABY	CGUGCCCGCCGCCGCUAG
#=GR PYR.ABY SS	<.................

//
# STOCKHOLM 1.0

#=GS PYR.OCC DE converted from Zweib's SRP dataset 

PYR.OCC		CGGGUAGGGCCGGGGGCUCGCCCUCCCCCGAGCCCCGAA
#=GR PYR.OCC SS  >>>....>>>>>>>>>..AAAAA<<<<<.....>>>>..

PYR.OCC	AUGGGCGUAAUGCGGGGGCCAGUAACCCGCACGUCGGCCG
#=GR PYR.OCC SS  ..aaaaa.....<<<<<<<<.....>>>>>>>>>>>>>>>

PYR.OCC	UAGUGGUCCAGGGCAGACCCGGCCGACCCAUGACCCCCGU
#=GR PYR.OCC SS  >>>.>>>>>>>>>>>>.>>>>>>>>..>>...>>>>>.>>

PYR.OCC	CCCGCGGGGCCGGCGGCGCGGAGCCCCCUCCGGAGGGAGG
#=GR PYR.OCC SS  >>>>>>>>>>>>>>>>.>>>>>>>>>>>>>>....<<<<<

PYR.OCC	GAGGCUACCGCCCUUACCGGGGGAACCAGGCCAGGCCCGG
#=GR PYR.OCC SS  <.<<<<.<<<<..<..>>>>>>.....>>>.....>>>..

PYR.OCC	AAGGGAGCAACCUAACCCCGGACGCCCGGCGUUCGCGGGG
#=GR PYR.OCC SS  ..<<<.....<<<..<<<<<<.<<<<.<<<.<<<<<<<<<

PYR.OCC	CCACGGGGUGAGGCAACGGCCGGGCCCCCUGCCCUGGGCC
#=GR PYR.OCC SS  ...<<<<<<..<<...<<<<<<<<....<<<<<<<<<<<<

PYR.OCC	CCUACGGCUGGCGUGCGGGGGCCGC
#=GR PYR.OCC SS	.<<<<<<<<<<<<<<<<<<..<<<.

//
# STOCKHOLM 1.0

#=GS RAS.SOL DE converted from Zweib's SRP dataset 

RAS.SOL		GACGGGCCUCCUCGCAUGGUGGCGCGGUCAACCUGGUCA
#=GR RAS.SOL SS  >>>>>>>>>>>>>>>>>>>>>>.>>>>>.....>>>>..

RAS.SOL	GGUCGGGAACGAAGCAGCCACAGCCGUUUUCCGCCAGUGC
#=GR RAS.SOL SS  ..>>>....<<<....<<<<..<<<<<...<<<<<<.<<<

RAS.SOL	CGAGGGUCAGGCUCGUCCCCCUUCU
#=GR RAS.SOL SS	.<<<<<...<<<<<<<<........

//
# STOCKHOLM 1.0

#=GS RIC.CON DE converted from Zweib's SRP dataset 

RIC.CON		GCUAGUAGUGGGCAUUGUACCUGUUUAGUCGGUCAGGUC
#=GR RIC.CON SS  .>>>>>>>>>>.>>>>>..>>>>>>.....>>>....>>

RIC.CON	UGAAAGGAAGCAGCCAGAGUGGGAUUCGAUGGGUCAUUAC
#=GR RIC.CON SS  >....<<<....<<<..<<<<<<...<<<<.<.<<<<<<<

RIC.CON	UAG
#=GR RIC.CON SS	<<<

//
# STOCKHOLM 1.0

#=GS RIC.PRO DE converted from Zweib's SRP dataset 

RIC.PRO		GCUAGUAGUGGGCAUUGCUCUUGCUUAGUUGGUCAGGUC
#=GR RIC.PRO SS  >>>>>>>>>>>.>>>.>.>>>>>>>....>>>>....>>

RIC.PRO	UGAAAAGAAGCAGCCAGGGUAAGAUUCUGUGGGUCAUUAC
#=GR RIC.PRO SS  >....<<<....<<<<.<<<<<<<..<.<<<..<<<<<<<

RIC.PRO	UAGU
#=GR RIC.PRO SS	<<<<

//
# STOCKHOLM 1.0

#=GS SCH.POM DE converted from Zweib's SRP dataset 

SCH.POM		CGCUGUAAUGGCUUGGUCGAAGUGUUUAGUACUCCCAAU
#=GR SCH.POM SS  .............>>>>>>..>>>>>>.>>>>>.>>...

SCH.POM	AGUGCAUGUUCGGUGGUCUCGGGUUCGAGUCUCGCUUUCG
#=GR SCH.POM SS  .>>>>>>>>>>.>>>>....>>>>..>>>>>>>>>>.>>>

SCH.POM	AUCCCUCGAUCUGCCACGUCUGUUCGAAGAGUAGUCUUCG
#=GR SCH.POM SS  >.>>>..>>>>>>>>>..>.>.>.>>>>>>....<<<<<<

SCH.POM	UGGCAACUGGCAGUUAAACCGUGUAGUACCGAUGGAGGUU
#=GR SCH.POM SS  .<<.<..<<<<<>>...<<>.>>>>>....>>>>....>>

SCH.POM	GGAAACAAUGCACAUCACUACCGGGUCUUGGGCAGUGCGA
#=GR SCH.POM SS  >....<<<....<<<<.<<<<<.<<<<..<<<...<.<<<

SCH.POM	UAGCGAUGGGAUUCACCUUCGCAGGAUGUGCAUGGAAGUA
#=GR SCH.POM SS  .<<<<.<.<<<<<<<<<<<<<<.<<<<<<<<<<<<.<<<<

SCH.POM	UAAACACAACGGUCGUU
#=GR SCH.POM SS	<<<<<<<..<<<<<<..

//
# STOCKHOLM 1.0

#=GS STA.AUR DE converted from Zweib's SRP dataset 

STA.AUR		CCGUGCUAGGUGGGGAGGUAGCGGUUCCCUGUACUCGAA
#=GR STA.AUR SS  >>>>>>.>>>>>>>>>>..AAAAA<<<<<<...>>>>..

STA.AUR	AUCCGCUUUAUGCGAGGCUUAAUUCCUUUGUUGAGGCCGU
#=GR STA.AUR SS  ..aaaaa.....<<<<<<<<....>>>..>>...>>.>>>

STA.AUR	AUUUUUGCGAAGUCUGCCCAAAGCACGUAGUGUUUGAAGA
#=GR STA.AUR SS  ...>>>>>>>>...>>.>>>>>>...>>>>>.....>>>.

STA.AUR	UUUCGGUCCUAUGCAAUAUGAACCCAUGAACCAUGUCAGG
#=GR STA.AUR SS  >>>.>.>>>>>>>>>>>>>>>>.>>>>.....>>>>....

STA.AUR	UCCUGACGGAAGCAGCAUUAAGUGGAUCAUCAUAUGUGCC
#=GR STA.AUR SS  >>>....<<<....<<<<...<<<<.<..<<<<<<.<<<.

STA.AUR	GUAGGGUAGCCGAGAUUUAGCUAACGACUUUGGUUACGUU
#=GR STA.AUR SS  <<<<<<...<.<<<.<<<.<<<.<<..<<<<<<...<<<<

STA.AUR	CGUGAAUUACGUUCGAUGCUUAGGUGCACGG
#=GR STA.AUR SS	<<<<<<..<<<.<<...<<..<<<.<<<<<<

//
# STOCKHOLM 1.0

#=GS STR.MUT DE converted from Zweib's SRP dataset 

STR.MUT		GGAGCAACAGCUUUGCGUGAAGCGGGUCAGGGGAGGAAU
#=GR STR.MUT SS  >>>>>>>>>>>>>>>>>>.....>>>>....>>>....<

STR.MUT	CCAGCAGCCCUAAGCGAUGUAAGCUGUGUGCUCU
#=GR STR.MUT SS	<<....<<<<...<<<.<<.<<<<<<<.<<<<<<

//
# STOCKHOLM 1.0

#=GS SUL.SO-A DE converted from Zweib's SRP dataset 

SUL.SO-A		AUGGUCAGGUAGGGUGGAGGGUCUCGCCAGCCCUUAUAC
#=GR SUL.SO-A SS  >>>>>>>>....>>>>>>>>>>..AAAAA<<<<<<...>

SUL.SO-A	CCACAUGGCGCAACGUGGGCACCAGUAACUCCUAUGCUAU
#=GR SUL.SO-A SS  >>>>.aaaaa....<<<<<<<<<.....>>>>>>>>>>>>

SUL.SO-A	AAUACCUGCUCUUCGAGAUCCCAGUCUAACUAUGAUCAUC
#=GR SUL.SO-A SS  >>>.>.>>>>>>>>>>>.>>>>>>>>>..>>....>.>>>

SUL.SO-A	GCCCGACGGGGCGAGAUAGUCGUGGGUUCCCUUUCUGGAG
#=GR SUL.SO-A SS  >.>>>>>>>>>>>.>>>>>.>>>>>>>>>>>>>>>>....

SUL.SO-A	GGAGAGGGAAUUCCACGUUGACCGGGGGAACCGGCCAGGC
#=GR SUL.SO-A SS  <<<<<<<<<<<.<<<<<.<..>>>.>>....>>>.....>

SUL.SO-A	CCGGAAGGGAGCAACCGUGCCCGGCUAUCCGCGUUCGUCG
#=GR SUL.SO-A SS  >>....<<<.....<<<..<<<<<.<<<<<<<.<<<<<<<

SUL.SO-A	GUCUCCGAUAGGAGGAAGACUGGGGGUAAAUCUCGGGGAG
#=GR SUL.SO-A SS  <....<<<<<...<<.<<<<<<<<<......<<<<<<<<<

SUL.SO-A	UAAGGGUUAUGGCAUAGGGGAGCUGACCAU
#=GR SUL.SO-A SS	<<.<.<<<<<<<<<<<<<<<..<<<<<<<<

//
# STOCKHOLM 1.0

#=GS SUL.SO-B DE converted from Zweib's SRP dataset 

SUL.SO-B		GGGGUCAGGGAGGGUGGGGGAUCUCGCCAAUCCCUAUUA
#=GR SUL.SO-B SS  >>>>>>>>>...>>>>>>>>>>..AAAA.<<<<<<....

SUL.SO-B	CCCGCAAGGCGUAAUGCGGGCACCAGUAACUCCUACCCUA
#=GR SUL.SO-B SS  >>>>>..aaaa....<<<<<<<<<.....>>>>>>>>>>>

SUL.SO-B	UGGUGUCUCCUAUCUGUAGGUCCCAGUGGAGCGAUGAAGC
#=GR SUL.SO-B SS  >>>>.>..>>>>>>>>>>>>>>>>>>>...>.......>.

SUL.SO-B	CUGCCCAGCGGGGCUUGGCGGUCAUGGGCUUUCUCUCCGG
#=GR SUL.SO-B SS  >>>.>>>>>>>>>>>.>>>>>>>>>>>>>>>>>>>>>>..

SUL.SO-B	AGGGAGAGAAAGUACCAUGAUAGCUGGGGGAAUCGGCGAG
#=GR SUL.SO-B SS  ..<<<<<<<<<<<.<<<<<<<..>>>.>>....>>>>...

SUL.SO-B	GCCCGGAAGGGAGCAGCCGUGCCUGGACGCCAGCGUUCGC
#=GR SUL.SO-B SS  .>>>....<<<....<<<<..<<<<<.<<<<<<<.<<<<<

SUL.SO-B	UGGUCAACAGCCAGAGUGAAACUGGGGUAAACCUAUAGAU
#=GR SUL.SO-B SS  <<<....<<<.<....<...<<<<<<<<....<<<<<<<<

SUL.SO-B	AGGUAGGCCAUGGGGUAGGGGGUCUGGCCCCAU
#=GR SUL.SO-B SS	<<<.<.<<<<<<<<<<<<<<<.<<<<<<<<<..

//
# STOCKHOLM 1.0

#=GS SUL.TOC DE converted from Zweib's SRP dataset 

SUL.TOC		GGGUCGGGUAGGGUGGGGAGUCUCGCCAGCUCCUGUAAC
#=GR SUL.TOC SS  >>>>>>>....>>>>>>>>>>..AAAAA<<<<<<....>

SUL.TOC	CCCGUGGCGUAAUGGGGCACCAGUAACCCUUAUGCCAUGA
#=GR SUL.TOC SS  >>>.aaaaa....<<<<<<<<.....>>>>>>>>>>>>>>

SUL.TOC	UACCUACCUCUCUAGAUCCCAGCUGAACGAUGAGCACCGC
#=GR SUL.TOC SS  >.>.>.>>>>>>>>>.>>>>>>>>.........>>>>>>.

SUL.TOC	CCGGUGGGGCGAGACGGACGCGAAUCUCCUCUCUGGAGGG
#=GR SUL.TOC SS  >>>>>>>>>>>.>>>>>>>>>>>>>>>>>>>>>>....<<

SUL.TOC	AGAGGGGAUAUCGCGUCAACCGGAGGAAUCGGCCAGGUCC
#=GR SUL.TOC SS  <<<<<<<<<.<<<<<<<..>>>>>.....>>>.....>>>

SUL.TOC	GGAAGGGAGCAACCGUGUCCGGCCGUCCGCGUUCACCGGU
#=GR SUL.TOC SS  ....<<<.....<<<..<<<<<.<<<<<<<.<<<<<<<<.

SUL.TOC	CACCGGUGUGAGAAAGGCUGGGGGUAAAUCUAGAGAGGAA
#=GR SUL.TOC SS  ...<<<<<<......<<<<<<<<......<<<<<<<<<.<

SUL.TOC	AGGAUCAUGGCAUAAGGGGGCCGACCCAU
#=GR SUL.TOC SS	.<.<<<<<<<<<<<<<<<..<<<<<<<..

//
# STOCKHOLM 1.0

#=GS TET.ROS DE converted from Zweib's SRP dataset 

TET.ROS		GCCAGGGUAGCAAUGCCUGUGACCUCGUGUGGCAUAAAC
#=GR TET.ROS SS  >>>.>>>>>....<<<<<.....>....<.<<<......

TET.ROS	AAUGUAGUUAGAAUAGUCAGAGUAUGAGAGUUUGAUGAGA
#=GR TET.ROS SS  >.>>>.>>>>>>>>>>.>>>>>>.>>.>.>.>......>>

TET.ROS	CAGUUUGCUAAGAGUGUGCCCGUUCCAAACAGUGAGUUGC
#=GR TET.ROS SS  >>>>>.>.>..>>>>>>>.>>.>>>>>.>>>>>>>>>>>>

TET.ROS	UAUGGUGGAAACCUAGUAAUAGGACUUCACCAGGGCAUUA
#=GR TET.ROS SS  >.>>>>>>>..>>>>....<<<<..<<<<<<<.<<<<>>.

TET.ROS	AAGAGCUGAGGAACCGCCUCAGGCUGGCAACAGAACAGGG
#=GR TET.ROS SS  ..<<>.>>>>......>>>....>>>....<<<....<<<

TET.ROS	AAAACUUGCCGCUUAUUGUGGUGGAAGGAUAACAUACUCA
#=GR TET.ROS SS  ....<<<<.<<<<<<<<<<..<<<<<<<....<<<<<<<<

TET.ROS	UUAACUGUCAAGCUAAUCGGUUCUGCUAUUCUGAUCAGAC
#=GR TET.ROS SS  <.<<<<<<<..<.<..<<<<<<<<<<<<<<<<<<<...<<

TET.ROS	ACU
#=GR TET.ROS SS	<.<

//
# STOCKHOLM 1.0

#=GS THE.ACI DE converted from Zweib's SRP dataset 

THE.ACI		UAUUGCCAGACUUGGCCGGGGGGUUAGGCGUCCCCUGUA
#=GR THE.ACI SS  ....>>>>>>>.>.>>>>>>>>>.AAAAA.<<<<<<...

THE.ACI	CCCGAAGUCUAGAUGCGGGGGCGACAGCCCGGUGAGACCA
#=GR THE.ACI SS  >>>>..aaaaa....<<<<<<<.<..>>>>>>>..>..>.

THE.ACI	CCUGGGUUUCUGCCAGGCCCUGCGGAAUCAAUGAUCUCCU
#=GR THE.ACI SS  ..>>>..>>>>>.>>>>>>>>......>>......>>>>>

THE.ACI	GUCCCUCUGGAUCGGAGGCCCAUGGACACGAUCUCAAAGG
#=GR THE.ACI SS  >>>>>>>>>>>>>>>>>>.>>>>>>.>.>>.>>>>....<

THE.ACI	AGAACGCGCCCAUGGCUUGCCAGGGGAACGCGCCAGGCCC
#=GR THE.ACI SS  <<<.<<.<.<<<<<<.<..>>>>>>.....>>.....>>>

THE.ACI	GGAAGGGAGCAACGACACCCUGGACUCUCGAUGCUGGAGG
#=GR THE.ACI SS  ....<<<.....<<...<<<<<<.<<<<.<<<.<<<<<<<

THE.ACI	GGUGCGGGGGUGAGAGGAAACAGGGGGUACCUGACAGGAC
#=GR THE.ACI SS  <<..<<<<<<...<<.......<<<<...<<<<.<<<<<.

THE.ACI	GCCCAGACCGAACCGGGUGUGUCUGGCUUCUGAUCGGC
#=GR THE.ACI SS	..<<<<..<..<<<<<<<..<<<<<<<...........

//
# STOCKHOLM 1.0

#=GS THE.THE DE converted from Zweib's SRP dataset 

THE.THE		AGCCCCCGGUCCAGCGCGGCGGGCCAGGCGUGAACCGGG
#=GR THE.THE SS  .>>>>>>>>>>>>>>>>>.>>>>>>>>>>>>.....>>>

THE.THE	UCAGGUCCGGAAGGAAGCAGCCCUAAGCGCCUCGGUCCGG
#=GR THE.THE SS  >....>>>....<<<....<<<<...<<<<<<.<<<<<<.

THE.THE	GCGCCGCUGGGAAGCCGGGGGCGCUU
#=GR THE.THE SS	.<<<.<<<<<...<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS TRE.PAL DE converted from Zweib's SRP dataset 

TRE.PAL		CCGGGGCCGCCCACGAAAUAUCCCCCAAACCCCGCUAGG
#=GR TRE.PAL SS  ...>>>.>>>...>>>>.>.>>>>>>.....>>>.....

TRE.PAL	UCCGGAAGGAAGCAACGGUAGGGGGACGCUUCGGUGCGCG
#=GR TRE.PAL SS  >>>....<<<.....<<<..<<<<<<.<.<<<<....<<<

TRE.PAL	AUCCGCCCCGG
#=GR TRE.PAL SS	.<<<.......

//
# STOCKHOLM 1.0

#=GS TRY.BR-A DE converted from Zweib's SRP dataset 

TRY.BR-A		AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUC
#=GR TRY.BR-A SS  >>>.>>>>>>...<<<<<<....>>>...<<<<<<....

TRY.BR-A	CCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUU
#=GR TRY.BR-A SS  >>>>>>.>>>>.>>>>.>>>>>....>>>.>>>>>>>>.>

TRY.BR-A	GCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUG
#=GR TRY.BR-A SS  >>.>>..>>>>>>>>>>>.....>..>>>>>>>>>>>>.>

TRY.BR-A	AGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGU
#=GR TRY.BR-A SS  >>>.>>>>.>>....<<.<<<<.<<<<<<<<<<>...<>>

TRY.BR-A	GGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUU
#=GR TRY.BR-A SS  .>>>>....>>>>....>>>....<<<....<<<<.<<<<

TRY.BR-A	GCGCACGUUCCCGUUCGAGAAGCACACCGAGGAGCAUCUC
#=GR TRY.BR-A SS  <<<<<<<.<..<.....<<<<...<<<<<<<<<<<<...<

TRY.BR-A	AGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGG
#=GR TRY.BR-A SS	<<<<<.<<.<<<.<<<<<<<<<.<<<<.<<<<<<

//
# STOCKHOLM 1.0

#=GS URE.URE DE converted from Zweib's SRP dataset 

URE.URE		UUAUAAUAUAUAUGUCAUUACAAUAUUAAGUAGCGAACC
#=GR URE.URE SS  .......>>>>>>>>>>>>>>>>>>..>>>>.>>.....

URE.URE	UUGUCAGGCCAGAGAUGGAGCAGCAAUAGCAAUAUCUUUU
#=GR URE.URE SS  >>>>....>>>....<<<....<<<<..<<.<<...<<..

URE.URE	UAUGUGUGAUGACAUAUAUUAA
#=GR URE.URE SS	<<<.<<<<<<<<<<<<<<<...

//
# STOCKHOLM 1.0

#=GS VIB.CHO DE converted from Zweib's SRP dataset 

VIB.CHO		GGGGGCCCUGGUCCUCCCGCAACACUAGUUCGUGAACCU
#=GR VIB.CHO SS  >>>>>>>>>>>>>.>>>>>>>>>>>..>>>>>>.....>

VIB.CHO	GGUCAGAUCCGGAAGGAAGCAGCCACAGCGGAUGAUGUGU
#=GR VIB.CHO SS  >>>....>>>....<<<....<<<<..<<<<<<...<<<<

VIB.CHO	GUGCCGGGAUGUGGCUGGGGUCUCC
#=GR VIB.CHO SS	.<<<.<<<<...<<<<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS XAN.AXO DE converted from Zweib's SRP dataset 

XAN.AXO		GGUGGCCCCGUCGGUCCCUCGCGACGCUAGAUCGAAAAU
#=GR XAN.AXO SS  .....>>>>>>>>>>.>>>>>>>.>>>..>>>>>>....

XAN.AXO	CCCGCCAGGGCCGGAAGGCAGCAACGGUAUCGAUUGAUGC
#=GR XAN.AXO SS  .>>>.....>>>....<<<.....<<<..<<<<<<...<<

XAN.AXO	GGGCGCCGAGGUCAACCGGCGGGG
#=GR XAN.AXO SS	<..<<<.<<<<...<<<<<<<<<<

//
# STOCKHOLM 1.0

#=GS YAR.LI-A DE converted from Zweib's SRP dataset 

YAR.LI-A		CUUAGCUGUAAUGGCAUUUUGUCGGAGUGGUAAAUCGUC
#=GR YAR.LI-A SS  ..>..>......<<......>>>>.>>>.>>>>>>.>>>

YAR.LI-A	UUCUUGUUGUGCGUUCGAGUCUUGGGCUCUGCACUUGGCC
#=GR YAR.LI-A SS  >>>>....>>>>>...>>>>>...>>>>>>>>>>.>.>>>

YAR.LI-A	AUUUGGUUGUCCUUUCCGAAUUCUGCGGUUGAUGGGCGUC
#=GR YAR.LI-A SS  >>>>>>>>>>.>><.<<<...<<<<<<....>>>>>.>>>

YAR.LI-A	UCGGUCUGAGUAAUCGGCUUUGAGAUUUCCGUUCUAAGAU
#=GR YAR.LI-A SS  >>>>.>>>>....<<<<.<.<<<<<<.<<<<<>>...<<.

YAR.LI-A	UAACUGGGAAACUUCAGUGGAGCAAUCCAGCAGAGAUCCA
#=GR YAR.LI-A SS  >>>>>>.....>>>....>>>....<<<....<<<...<<

YAR.LI-A	GUUGCCGUGGGUAUGGCGGUGGGAUCGCAACCAAGUGGUA
#=GR YAR.LI-A SS  <<<<.<<<<<<.....<<<.<<<...<<<<<<<<<<<<<<

YAR.LI-A	UAUGUUAUGGAAGAUAUUUACGAUCACGAUU
#=GR YAR.LI-A SS	........<<<<<<<<<<<<<.<<<.<<<<.

//
# STOCKHOLM 1.0

#=GS ZYM.MOB DE converted from Zweib's SRP dataset 

ZYM.MOB		GUCGGGCGGACGGUGCUGUCGCCAACCCGGUCAGGUCCG
#=GR ZYM.MOB SS  >>>>>>>>>.>>>>>...>>>......>>>>....>>>.

ZYM.MOB	GAAGGAAGCAGCCGUAACGAAUUUUUAUCGGGUCGUUCCG
#=GR ZYM.MOB SS  ...<<<....<<<<...<<<.....<<<<.<.<<<<<<.<

ZYM.MOB	GC
#=GR ZYM.MOB SS	<<

//
# STOCKHOLM 1.0

#=GS Acid.ferr.-1 DE converted from Zweib's tmRNA dataset 

Acid.ferr.-1		GGGGGCGACCGGCUUCGACGCAGGUCGCGAAGCCUUCGG
#=GR Acid.ferr.-1 SS  >>>>>>>...........>>>>>..>.....>>>.>>>>

Acid.ferr.-1	UGCAUGCAGAGCUGCGGUUCGCUCUUAAAACUGGUCGCAG
#=GR Acid.ferr.-1 SS  .>>>>>>AAAAA.>>>>>>.aaaaa.......<<<<<<..

Acid.ferr.-1	AUUCAUAAUUGCCAACGACAGCAAUUACGCUCUCGCUGCU
#=GR Acid.ferr.-1 SS  ...............................>>>>>>>..

Acid.ferr.-1	UAAGCAGUGAGCCCUCUGCCCGGAUUUGUCUGUGGAUCCG
#=GR Acid.ferr.-1 SS  ....<<<<<<<>>>>>>>.>>>>>>>..BBBBBB<<<<<<

Acid.ferr.-1	GAGCCGAAAGGCGCGCGGAGGGUCAUGAAACACGGAAUCG
#=GR Acid.ferr.-1 SS  ..>>>....<<<<..<<<<<<<........bbbbbb...>

Acid.ferr.-1	UGCGCAUUCUAGUCUGUGGGAUGCGCGCUAAAUUAAAGCA
#=GR Acid.ferr.-1 SS  >>>>>>>>>>>.CCCC<<<<<<<<<<<<..........cc

Acid.ferr.-1	GAAUCGCCAUGUCGUCAUCCUGUCUGUCGGAGGGCGGUGC
#=GR Acid.ferr.-1 SS  cc...>>>.>>>>>>..>>>.DD.DDDD<<<..<<<<<<.

Acid.ferr.-1	GGUUAAAGCCAAAAGACAAACUACGCAUGUAGAUCCGGUG
#=GR Acid.ferr.-1 SS  <<<...........dddd.dd...<<<<<<....<<<<.<

Acid.ferr.-1	GUCUAGGUACUGCGGACGCGGGUUCAAUUCCCGCCGCCUC
#=GR Acid.ferr.-1 SS  <<....<..<<<<<...>>>>>.......<<<<<<<<<<<

Acid.ferr.-1	CACCA
#=GR Acid.ferr.-1 SS	<....

//
# STOCKHOLM 1.0

#=GS Acin.ADP1 DE converted from Zweib's tmRNA dataset 

Acin.ADP1		GGGGAUGUUAUUGGCUUCGACGCUGGUGAUGAAGCUCAU
#=GR Acin.ADP1 SS  >>>>>>>.............>>>>>>>>......>>>..

Acin.ADP1	AGAUGCAUGCCGAGAGCGCAUUUUCUCUCGUAAAUAAAAU
#=GR Acin.ADP1 SS  .>>>>>>>>>>>>>>..AAA..AA.<<<<<.......aa.

Acin.ADP1	UUGCAUUUUAAUAGUCGCAAACGACGAAACUUACGCUCUA
#=GR Acin.ADP1 SS  .aaa............................>>>..>>.

Acin.ADP1	GCUGCCUAAGGGCAGUUUGUCCGCUUCCUAGAAUACUUGU
#=GR Acin.ADP1 SS  >>>.......<<<<<..<<<.>>>>.>.>.>..>.>>>>.

Acin.ADP1	GGUUUAGGAACCCGACCGUAGCGCACGCACACAAGUCCGU
#=GR Acin.ADP1 SS  .BB.<<<<.<..<.<..<.<<<<.bb......>>>>>>>.

Acin.ADP1	AUAGAGUCAAGCCUCGGGGCUUUAUACCAAACUUAGAGGA
#=GR Acin.ADP1 SS  .>....CC.C<..<.<<<.<<<...........c.cc...

Acin.ADP1	UCGCAUCUUGUACCCUGUUCGUCGGGUCACUGGGUGUUAA
#=GR Acin.ADP1 SS  ..>>>>>>.>>.>>>.D.D.DDD<<<..<<.<<<<<<...

Acin.ADP1	AACAAUAGACGAUAUCUAAGCAUGUAGUAUUCUCGAGUGU
#=GR Acin.ADP1 SS  .......ddd...d.d...<<<<<<...<<<...<<<...

Acin.ADP1	AGUGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACC
#=GR Acin.ADP1 SS  ..<<<<<<<<...>>>>>.......<<<<<<<<<<<<...

Acin.ADP1	A
#=GR Acin.ADP1 SS	.

//
# STOCKHOLM 1.0

#=GS Acti.acti DE converted from Zweib's tmRNA dataset 

Acti.acti		GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCGA
#=GR Acti.acti SS  >>>>>>>.............>>>>>>>......>>>...

Acti.acti	AGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGC
#=GR Acti.acti SS  >>>>>>>>>>>>>>.AAAAA...<<<<<.......aaaaa

Acti.acti	AAAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAG
#=GR Acti.acti SS  ..............................>>>..>>>>>

Acti.acti	CUUAAUAACCUGCCUUUAGCCUUCGCUCCCCAGCUUCCGC
#=GR Acti.acti SS  .........<<<<.<..<<<>>>>>>>>>>>..>>>...B

Acti.acti	UCGUAAGACGGGGAUAAAGCGGAGUCAAACCAAAACGAGA
#=GR Acti.acti SS  BBBB<<<..<<<<....<<<<<<<..........bbbbb.

Acti.acti	UCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCAUUAAAUU
#=GR Acti.acti SS  ..>>>>...>.>>....CCCCC<<.<....<<<<......

Acti.acti	AAAUCAAAGUAGCUUAAUUGUCGCGUGUCCGUCAGCAGGA
#=GR Acti.acti SS  ...ccccc...>>>>>>>>.>.>>..DDDDDDD.<<<.<<

Acti.acti	UUAAGUGAAUUUAAAGACCGGACUAAACGUGUAGUGCUAA
#=GR Acti.acti SS  <<<<<<.........ddd.dddd...<<<<<<...<<<..

Acti.acti	CGGCAGAGGAAUUUCGGACGGGGGUUCAACUCCCCCCAGC
#=GR Acti.acti SS  .<<<.....<<<<<<<...>>>>>.......<<<<<<<<<

Acti.acti	UCCACCA
#=GR Acti.acti SS	<<<....

//
# STOCKHOLM 1.0

#=GS Agro.tume DE converted from Zweib's tmRNA dataset 

Agro.tume		GGGGGCGAAAUAGGAUCGACAAGGGCGUAAAGAUCGAAC
#=GR Agro.tume SS  >>>>>>>............>>>>>>.......>>>>.>>

Agro.tume	UUUUGCUCGGCAUGAUACCGCCGUUAUCGGGUCACAAGUG
#=GR Agro.tume SS  >.>>>>>.AAA..>>>.>>>..aaa..<<<<<<.......

Agro.tume	UAGUUGCAAAUGACAACAACGCUAAGGAAUACGCUCUCGC
#=GR Agro.tume SS  .............................>.>..>.>>>>

Agro.tume	UGCCUAAUGGCGGUGCGGGAAUUCCGCUCUAAGUCCUUAC
#=GR Agro.tume SS  >>.....<<<<<<.<..<<.........BBBB....>>>>

Agro.tume	GGUUAGCCCCGUAAGGCGGGGUUCGGAGGUACCUGGCAAC
#=GR Agro.tume SS  >>bbbb..<<<<<<.>>.>>>>..CCCCCC<<<<.<<...

Agro.tume	AGAAACCUCCACCUGCCGGGGCAACCCGGCUAUGGCGAUA
#=GR Agro.tume SS  ....cccccc...D>>>>>>..d.<<<<<<...<<<<<..

Agro.tume	AACGGUCGGUGUAAUAAACCUAUUGGACCCGGGGGCGGUA
#=GR Agro.tume SS  ...<<<<<<<........<<<.<<<...>>>>>.......

Agro.tume	CCCGGCGCCUCCACCA
#=GR Agro.tume SS	<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Alca.eutr DE converted from Zweib's tmRNA dataset 

Alca.eutr		UGGGCCGACCUGGUUUCGACGUGGUUACAAAGCAGUGAG
#=GR Alca.eutr SS  .>>>>>>............>>>>>>>.....>>>>.>>>

Alca.eutr	GCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGAAUGC
#=GR Alca.eutr SS  >>>>>>>>>>>..AAAA..<<<<<.......aaaa.....

Alca.eutr	AAUAACUGCUAACGACGAACGUUACGCACUCGCUUAAUUG
#=GR Alca.eutr SS  .........................>>..>>>........

Alca.eutr	CGGCCGUCCUCGCACUGGCUCGCUGACGGGCUAGGGUCGC
#=GR Alca.eutr SS  <<<..<<>>>>>>.>>>>>>..BBBBBB<<<<<<>>>>..

Alca.eutr	AAGACCACGCGAGGUAUUUACGUCAGAUAAGCUCCGGAAG
#=GR Alca.eutr SS  ..<<<<..<<<<<<......bbbbbb....>>>>>>>...

Alca.eutr	GGUCACGAAGCCGGGGACGAAAACCUAGUGACUCGCCGUC
#=GR Alca.eutr SS  .CCCCC....<<<<<<.<.........ccccc..>>>>.>

Alca.eutr	GUAGAGCGUGUUCGUCCGAUGCGCCGGUUAAAUCAAAUGA
#=GR Alca.eutr SS  >>>...>>.DDDDDDD<<.<<<<.<<<<..........dd

Alca.eutr	CAGAACUAAGUAUGUAGAACUCUCUGUGGAGGGCUUACGG
#=GR Alca.eutr SS  d.dddd...<<<<<<....<<<.<<<<....<<.<<<<<.

Alca.eutr	ACGCGGGUUCGAUUCCCGCCGGCUCCACCA
#=GR Alca.eutr SS	..>>>>>.......<<<<<<<<<<<.....

//
# STOCKHOLM 1.0

#=GS Anab.spec DE converted from Zweib's tmRNA dataset 

Anab.spec		GGGUCCGUCGGUUUCGACAGGUUGGCGAACGCUACUCUG
#=GR Anab.spec SS  >>>>>.>..........>>>>>>>>.....>>>.>>>>>

Anab.spec	UGAUUCAGGUCGAGAGUGAGUCUCCUCUGCAAAUCAAGGC
#=GR Anab.spec SS  >....>>>>>A.AAA.>>>>>>>..aaaa.......<<<<

Anab.spec	UCAAAACAAAAGUAAAUGCGAAUAACAUCGUUAAAUUUGC
#=GR Anab.spec SS  <<<.....................................

Anab.spec	UCGUAAGGACGCUCUAGUAGCUGCCUAAAUAGCCUCUUUC
#=GR Anab.spec SS  ...........>>..>>.>>>>>......<<<<.<.<<..

Anab.spec	AGGUUCGAGCGUCUUCGGUUUGACUCCGUUAAGGACUGAA
#=GR Anab.spec SS  <<........>>>>>>>>>>>...BBBBBB..<<<<<<<<

Anab.spec	GACCAACCCCCAACGGAUGCUCUAGCAAUGUUCUCUGGUU
#=GR Anab.spec SS  <<<........bbbbbb....>>>>>>>.>>>CCCCCCCC

Anab.spec	GGCUUGCUAGCUAAGAUUUAAUCAGAGCAUCCUACGUUCG
#=GR Anab.spec SS  <<<<<<<<<<.........cccccccc.>>>>>.DDDDD<

Anab.spec	GGAUAAUGAACGAUUCCCGCCUUGAGGGUCAGAAAGGCUA
#=GR Anab.spec SS  <<<<...dddddEEEE..>>>>>..eeee....<<<<<..

Anab.spec	AACCUGUGAAUGAGCGGGGGGUCAAUACCCAAUUUGGACA
#=GR Anab.spec SS  .<<<<<.......<<<<<<<<<......<<<<<<<<...>

Anab.spec	GCAGUUCGACUCUGCUCGAUCCACCA
#=GR Anab.spec SS	>>>>.......<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Aqui.aeol DE converted from Zweib's tmRNA dataset 

Aqui.aeol		GGGGGCGGAAAGGAUUCGACGGGGACAGGCGGUCCCCGA
#=GR Aqui.aeol SS  >>>>>>>............>>>>>>>.....>>>>..>>

Aqui.aeol	GGAGCAGGCCGGGUGGCUCCCGUAACAGCCGCUAAAACAG
#=GR Aqui.aeol SS  >>.>>>>>>AAAA>>>>>aaaa....<<<<<.........

Aqui.aeol	CUCCCGAAGCUGAACUCGCUCUCGCUGCCUAAUUAAACGG
#=GR Aqui.aeol SS  ......................>>>>>.............

Aqui.aeol	CAGCGCGUCCCCGGUAGGUUUGCGGGUGGCCUACCGGAGG
#=GR Aqui.aeol SS  <<<<<>>>>>>>>>>>>>>>.BBBBBB<<<<<<<<<<.<<

Aqui.aeol	GCGUCAGAGACACCCGCUCGGGCUACUCGGUCGCACGGGG
#=GR Aqui.aeol SS  <<<........bbbbbb...>>>>>>>>>>>.CCCCCCC<

Aqui.aeol	CUGAGUAGCUGACACCUAACCCGUGCUACCCUCGGGGAGC
#=GR Aqui.aeol SS  <<<<<<<<<<.........ccccccc>.>>>>>>>>..>>

Aqui.aeol	UUGCCCGUGGGCGACCCGAGGGGAAAUCCUGAACACGGGC
#=GR Aqui.aeol SS  >.DDDDDDD<<<..<<<<<<<<.<.........ddddddd

Aqui.aeol	UAAGCCUGUAGAGCCUCGGAUGUGGCCGCCGUCCUCGGAC
#=GR Aqui.aeol SS  ...<<<<<<....<<<<<<<<.........<<<<<<<...

Aqui.aeol	GCGGGUUCGAUUCCCGCCGCCUCCACCA
#=GR Aqui.aeol SS	>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Azot.vine DE converted from Zweib's tmRNA dataset 

Azot.vine		GGGGCCGAUUAGGAUUCGACGCCGGUAACGAAACUUGAG
#=GR Azot.vine SS  >>>>>>>............>>>>>>>........>>>.>

Azot.vine	GGGCAUGCCGAGUUGGUGGCAGAACUCGUAAAUCCACUGC
#=GR Azot.vine SS  >.>>>>>>AAAAA..>>>>>>>.aaaaa........<<<<

Azot.vine	UACAAACUCAUAGUUGCCAACGACGACAACUACGCUCUGG
#=GR Azot.vine SS  <<<.................................>>>>

Azot.vine	CGGCUUAAUGCCCCAGCAGUCUCCAGGGGAUGCCUGUAAA
#=GR Azot.vine SS  .>>.......<<<<<<>>>>>>>...>>>.>.BBBBB.<.

Azot.vine	CCCGAAGAGACUGUCAGAUAGAACAGGAUCGCCGCCAAGU
#=GR Azot.vine SS  <<<...<<<<<<<.........bbbbb...>>>>..>.>>

Azot.vine	UCGCUGUAGACGUAACGGCUAAAACUCAUACAGCUCGCCC
#=GR Azot.vine SS  >.CCCCCC<<<.<..<<<<.........cccccc..>>>>

Azot.vine	AAAGCACCCUGCCCGUCGGGCCGCAAUGGGUUAACUCAAU
#=GR Azot.vine SS  >..>>.>>>.DDDDDDD<<<..<<..<<<<<.........

Azot.vine	AGACAGGGCUAAGCAUGUAGAACCGAUAGCGGAGAGCUGG
#=GR Azot.vine SS  .ddd.dddd...<<<<<<....<<..<<<......<<<<<

Azot.vine	CGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
#=GR Azot.vine SS	<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Baci.anth DE converted from Zweib's tmRNA dataset 

Baci.anth		GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAG
#=GR Baci.anth SS  >>>>>>>............>>>>>>>>......>>>>>>

Baci.anth	GUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAG
#=GR Baci.anth SS  >>>>>>>>>>>>>>AA..AA.<<<<<......aaaa....

Baci.anth	CCUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUU
#=GR Baci.anth SS  ............................>>>>.>.>>...

Baci.anth	AAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUA
#=GR Baci.anth SS  .....<<.<<<<<>>>>>>>>>>>>>>.BBBBBB<<<<.<

Baci.anth	GGGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCG
#=GR Baci.anth SS  <<<..<<<<<<.........bbbbbb....>>...>>>>.

Baci.anth	CCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAAC
#=GR Baci.anth SS  ..CCCCC.<<<<...<<...........ccccc..>>.>.

Baci.anth	UUGGAAGCCUGUCGAUAGGCCGAAGAGUUCGCGAAAUGCU
#=GR Baci.anth SS  >>....>>>.DDDDDDD<<<....<<..<.<<........

Baci.anth	AAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAU
#=GR Baci.anth SS  ....ddddddd...<<<<<<...<<<<<<<<<.....<<<

Baci.anth	UUUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
#=GR Baci.anth SS	<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Baci.halo DE converted from Zweib's tmRNA dataset 

Baci.halo		GGGGACGUUACGGAUUCGACAGGGAUGGAUCGAGCUUAA
#=GR Baci.halo SS  >>>>>>>............>>>>>>>>......>>>>>>

Baci.halo	GUGGCGAGCCGAGGUGGCGAACUCGUUAAAACGCCAUCGC
#=GR Baci.halo SS  >>.>>>>>>AAAA.>>>>>..aaaa......<<<<<....

Baci.halo	CAAUAACUGGCAAAGAAAACAACAACUUCGCAUUAGCUGC
#=GR Baci.halo SS  ...........................>>>>>>>.>>>>.

Baci.halo	CUAAGCUAGCAAAUGCGGUUCCGCCCUCCAUCGCCCAUGU
#=GR Baci.halo SS  ......<<<<.<<<<<<<.>>>>.>.>>>>>.BBBBBB<<

Baci.halo	GGUAGGUGUCGGGACUCACUUUUAGUGGGCUACGCCUCUC
#=GR Baci.halo SS  <<.<...<.<<<<...........bbbbbb....>>>.>.

Baci.halo	ACCCUCCGUCUGUGGGUGAAGGAAGAGAUUUAUCAGACUA
#=GR Baci.halo SS  >>>>...CCCCC.<<<<<.<<<...........ccccc..

Baci.halo	GCCUUACGGAAGCCUGUCGCUGGGCUGAAGUAACGGCGAA
#=GR Baci.halo SS  >>>.>>>....>>>.DDDDDDD<<<....<<.<.<<<...

Baci.halo	AUGCGAAUACAGUGACUACGCUCGUAGAAGCUUAAGUACU
#=GR Baci.halo SS  .........ddddddd...<<<<<<....<<<<<<<<...

Baci.halo	CGUUAUUUCUGGACGUGGGUUCGAUUCCCACCGUCUCCAC
#=GR Baci.halo SS  ...<<<<<<<<...>>>>>.......<<<<<<<<<<<<..

Baci.halo	CA
#=GR Baci.halo SS	..

//
# STOCKHOLM 1.0

#=GS Baci.stea DE converted from Zweib's tmRNA dataset 

Baci.stea		GGGGACGAUCCGGAUUCGACAGGGGUAGGUCGAGCUUAA
#=GR Baci.stea SS  >>>>>>>............>>>>>>>>......>>>>>>

Baci.stea	GCGGCGAGCCGAGGGGGACGUCCUCGUAAAAACGUCACCU
#=GR Baci.stea SS  >>>>>>>>>>>>>>..AAAA.<<<<<......aaaa....

Baci.stea	AAAGAUAACUGGCAAACAAAACUACGCUUUAGCUGCCUAA
#=GR Baci.stea SS  .........................>..>>>>>>>.....

Baci.stea	UUGCUGCAGCUAGCUCCUCCCGCCAUCGCCCGCGUGGCGU
#=GR Baci.stea SS  ......<<<<<<<..<..>>>.>.>....>.BB.BB..<.

Baci.stea	UCGAGGGGCUCAUAUGAAGCGGGCUACGCCCAAAUCCGCC
#=GR Baci.stea SS  <.<.<<<............bb.bb....>>>..>>>>...

Baci.stea	GCCUGAGGAUGAGGGAAGAGAUGAACCAGGCUAGCCGCCG
#=GR Baci.stea SS  CCCCC.<<<<..<<<...........ccccc..>>>>..>

Baci.stea	GGAGGCCUGUCGGUAGGCGGAACGGACGGCGAAGCGAAAU
#=GR Baci.stea SS  ....>>>.DDDDDDD<<<....<...<<<<..........

Baci.stea	AUACCGACUACGCUCGUAGAUGCUUAAGUGGCGAUGCCUC
#=GR Baci.stea SS  .ddddddd...<<<<<<...<<<<<<<<<.....<<<<<<

Baci.stea	UGGACGUGGGUUCGACUCCCACCGUCUCCACCA
#=GR Baci.stea SS	<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Baci.subt DE converted from Zweib's tmRNA dataset 

Baci.subt		GGGGACGUUACGGAUUCGACAGGGAUGGAUCGAGCUUGA
#=GR Baci.subt SS  >>>>>>>............>>>>>>>>......>>>>>>

Baci.subt	GCUGCGAGCCGAGAGGCGAUCUCGUAAACACGCACUUAAA
#=GR Baci.subt SS  >>..>>>>>>>>>>.AAA.<<<<<......aaa.......

Baci.subt	UAUAACUGGCAAAACUAACAGUUUUAACCAAAACGUAGCA
#=GR Baci.subt SS  ........................................

Baci.subt	UUAGCUGCCUAAUAAGCGCAGCGAGACUCUUCCUGACAUU
#=GR Baci.subt SS  >>.>>>>...........<<<<.<<.>>>>>>..>>>>>.

Baci.subt	GCCUAUGUGUCUGUGAAGAGCACAUCCAAGUAGGCUACGC
#=GR Baci.subt SS  BBBBBB<<<<<...<<<<<<.........bbbbbb....>

Baci.subt	UUGCGUUCCCGUCUGAGAACGUAAGAAGAGAUGAACAGAC
#=GR Baci.subt SS  >>>>>>>>..CCCCC.<<<<<<<<<..........ccccc

Baci.subt	UAGCUCUCGGAAGGCCCGCCCGCAGGCAAGAAGAUGAGUG
#=GR Baci.subt SS  ..>>>>.>.....>>>.DDD.DDD<<<.....<..<<<<.

Baci.subt	AAACCAUAAAUAUGCAGGCUACGCUCGAGACGCUUAAGUU
#=GR Baci.subt SS  ............ddd.ddd...<<<<<....<<<<<<<<.

Baci.subt	AAUCGAUGUUUCUGGACGUGGGUUCGACUCCCACCGUCUC
#=GR Baci.subt SS  ......<<<<<<<<...>>>>>.......<<<<<<<<<<<

Baci.subt	CACCA
#=GR Baci.subt SS	<....

//
# STOCKHOLM 1.0

#=GS Bact.fors DE converted from Zweib's tmRNA dataset 

Bact.fors		GGGGCUGACCGGUUUUGACAGCGGGCAGAAGUGGUUUGU
#=GR Bact.fors SS  >>>>>>>...........>>>>>>>......>>>>>>>>

Bact.fors	AAGCAUGCAGUGCGUCGUUGGCCGGCACUUUAAUCUCGGU
#=GR Bact.fors SS  ..>>>>>>AAAAA...>>>>>>>.aaaaa........<<<

Bact.fors	UGAUCCAAUUUUAACUGGCGAAAAUAACUACGCUCUCGCU
#=GR Bact.fors SS  <<<<..........................>>.>>>.>>>

Bact.fors	GCUUAAUCGAAGCACAGUAGAUUGAAGCUUAAUCCUUACA
#=GR Bact.fors SS  >.............<<<<<<<.<<................

Bact.fors	CAAGGUGUUUGGACGAGACAUCACCCGGAAGCCGUGGCUU
#=GR Bact.fors SS  ..................>..>>>>>>>>.>>>....BBB

Bact.fors	CGAGGCAAUCCGAACCGGUGGUGCAGAAAUGUCGGAGAUA
#=GR Bact.fors SS  BBB<<<..<<<<.......<<<<..<.....bbbbbb...

Bact.fors	GCUUGACGGAUGUCCCGUACGGCAAGUGAAAAUUCAGGGA
#=GR Bact.fors SS  >>>>>.>>.>>.CCCC<<.<<.<<<<<.........cccc

Bact.fors	AUAAGGUUGCGGUGGGUGGCUUCGGUCUUGCCGCAGCACG
#=GR Bact.fors SS  .....>>>>>>>>....>>DDDDD.D<<.<<<<<<<<...

Bact.fors	AAAAUGAAGGCGAAGAUAAGCAUGUAGAAAGCAAAUUAGU
#=GR Bact.fors SS  ........d.ddddd....<<<<<<.....<<<<<<<<..

Bact.fors	UCCUCGUUUGGACGAGAGUUCGAAUCUCUCCAGCUCCACC
#=GR Bact.fors SS  ..<<<<<.<<...>>>>>.......<<<<<<<<<<<<...

Bact.fors	A
#=GR Bact.fors SS	.

//
# STOCKHOLM 1.0

#=GS Bact.frag DE converted from Zweib's tmRNA dataset 

Bact.frag		GGGGUUGACUGGUUUUGACAGCGGGCAGAAAUGGUGGGU
#=GR Bact.frag SS  >>>>>>>...........>>>>>>>.....>>.>>>>>>

Bact.frag	AAGCAUGCAGUGCGUCGGUGAUUUGCACUUUAAUCUCAGU
#=GR Bact.frag SS  ..>>>>>>AAAAA...>>>>>>>.aaaaa........<<<

Bact.frag	UAUCAAAAUUUUAUCUGGCGAAACUAAUUACGCUCUUGCU
#=GR Bact.frag SS  <<<<...........................>.>>>.>>>

Bact.frag	GCUUAAUCGAAUCAUAGUAGAUUAGCUUAAUCCAGGCACC
#=GR Bact.frag SS  >.............<<<<<<<.<.................

Bact.frag	AGGUGCCAGGACGAGACAUCACUCGGAAGCUGUUGCUCCG
#=GR Bact.frag SS  ................>..>>>>>>>>>>>>....BBBBB

Bact.frag	AAGCAUUCCGGUUCAGUGGUGCAGUUACAUCGGGGAUAGU
#=GR Bact.frag SS  B<<<.<<<<<.......<<<<..<.....bbbbbb...>>

Bact.frag	CAGAAGUGGCCUUGCGCUUCUGAUGAAACUUUAAAGGAUA
#=GR Bact.frag SS  >>>>>>>..CCCC..<<<<<<<<<.........cccc...

Bact.frag	AGGCAGGAAUUGAUGGCUUUGGUUCUGCUCCUGCACGAAA
#=GR Bact.frag SS  ..>>>>>>.>....>>DDDDD.D<<.<.<<<<<<......

Bact.frag	AACUUAGGCAAAGAUAAGCAUGUAGAAAGCUUAUGAUUUC
#=GR Bact.frag SS  ......d.ddddd....<<<<<<.....<<<<<<.<<...

Bact.frag	CUCGUUUGGACGAGGGUUCGAAUCCCUCCAGCUCCACCA
#=GR Bact.frag SS	<<<<<.<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Borr.burg DE converted from Zweib's tmRNA dataset 

Borr.burg		GGGGAUGUUUUGGAUUUGACUGAAAAUGUUAAUAUUGUA
#=GR Borr.burg SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Borr.burg	AGUUGCAGGCAGAGGGAAUCUCUUAAAACUUCUAAAAUAA
#=GR Borr.burg SS  >>>.>>>>>>>>>>>AAA<<<<<......aaa........

Borr.burg	AUGCAAAAAAUAAUAACUUUACAAGCUCAAAUCUUGUAAU
#=GR Borr.burg SS  ........................................

Borr.burg	GGCUGCUUAAGUUAGCAGAGGGUUUUGUUGAAUUUGGCUU
#=GR Borr.burg SS  .>>>>.......<<<<>>>>>>>...>.>>>>>>>.BBBB

Borr.burg	UGAGGUUCACUUAUACUCUUUUCGACAUCAAAGCUUGCUU
#=GR Borr.burg SS  BB<<<<<<<.<...<<<<<<<.......bbbbbb...>>>

Borr.burg	AAAAAUGUUUUCAAGUUGAUUUUUAGGGACUUUUAUACUU
#=GR Borr.burg SS  >>>>..>>>.CCCCCC.<<<<<<<<<<.........cccc

Borr.burg	GAGAGCAAUUUGGUGGUUUGCUAGUAUUUCCAAACCAUAU
#=GR Borr.burg SS  cc..>>>>>.>>>>>>....DDDDDDD.<<...<<<<.<<

Borr.burg	UGCUUAAUAAAAUACUAGAUAAGCUUGUAGAAGCUUAUAG
#=GR Borr.burg SS  <<<........ddddddd....<<<<<<....<<<<<<<<

Borr.burg	UAUUAUUUUUAGGACGCGGGUUCAAUUCCCGCCAUCUCCA
#=GR Borr.burg SS  <<..<<<<<<<<...>>>>>.......<<<<<<<<<<<<.

Borr.burg	CCA
#=GR Borr.burg SS	...

//
# STOCKHOLM 1.0

#=GS Brad.japo DE converted from Zweib's tmRNA dataset 

Brad.japo		GGGGGCGAAAUAGGAUCGACGAGGGCGUAAAGGGCGUGC
#=GR Brad.japo SS  >>>>>>>............>>>>>>.......>>>>.>>

Brad.japo	UUUUUCCCGGUAUUGUUCCGCCGUUAUCGGGCUACUGCAA
#=GR Brad.japo SS  >.>>>>>.AAA...>>.>>>..aaa..<<<<<........

Brad.japo	UAGUUGCCAACGACAACUUUGCUCCGGUUGCUCAGGCUGC
#=GR Brad.japo SS  ...........................>>..>>>>>>>>.

Brad.japo	GUAACGCAGUUUGAAAGACCAUCUUAAAGUCCUAACGGGU
#=GR Brad.japo SS  ......<<<<<<<<..<<....>>>>>...>.BBBBBB<<

Brad.japo	UAAGCUCCGUUAGGCGGGGUUCGGAGGCACCUGGCAACAG
#=GR Brad.japo SS  <<<<..bbbbbb.>>.>>>>..CCCCCC<<<<.<<.....

Brad.japo	AAGCCUCCACUUGCCGGUUCGCCGGCUAUGGAAAUAAACG
#=GR Brad.japo SS  ..cccccc....>>>>>>..<<<<<<...<<<<<.....<

Brad.japo	GUCGUCGUAAUAAACCAUUCGGACCCGGGGGCGGUACCCG
#=GR Brad.japo SS  <<<<<<........<<.<<<<...>>>>>.......<<<<

Brad.japo	GCGCCUCCACCA
#=GR Brad.japo SS	<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Buch.APS- DE converted from Zweib's tmRNA dataset 

Buch.APS-		GGGGCUGUUUUUGGAUUUGACAAAAUUAUCAACAAAGUA
#=GR Buch.APS- SS  >>>>>>>.............>>>>>>>........>>>>

Buch.APS-	AAGUGCAUGCCGAGGAACGGUUUGCCUCGAUAAAAGCCGU
#=GR Buch.APS- SS  >>>>>>>>>>AAAAA.>>>>>>>.aaaaa....<<<<<<<

Buch.APS-	AAAAAAAUAAUUGCAAAUAAUAAACAAAACUACGCUUUAG
#=GR Buch.APS- SS  .................................>>>>>>.

Buch.APS-	CAGCUUAAAAAACUGAAUAAAGCCCUUCCUUCUUAUCCUC
#=GR Buch.APS- SS  >>>.........<<<..<<<<<<>>>>>>>>>>>>>>>>.

Buch.APS-	CUUCUCUUAGGAUGAGAAAACAGGAAGGUCAGAAAAAGAG
#=GR Buch.APS- SS  ..BBBBBB<<<<<<<<<....<<<<<<<.......bbbbb

Buch.APS-	AAAAACGUGGAUAUCAAGCUUGACGAUAACACGAAGUAGU
#=GR Buch.APS- SS  b....>>>>..>>>>..CCCCCC.<<<<.<<<<.......

Buch.APS-	UUUUUCAAGCUAUAUACCUAAUAUGUGUUUUUCCAAAUUA
#=GR Buch.APS- SS  ....cccccc....>>>>>>>>.>>.DDDDDDD<<.<<<<

Buch.APS-	GGUAAUGAAUUCAAUAAAGAAAAAACUAAGCAUGUAGGGC
#=GR Buch.APS- SS  <<<<..............ddd.dddd...<<<<<<...<<

Buch.APS-	UUUAUUAGUAGAAAUUUUGGACGCGGGUUCGAAUCCCGCC
#=GR Buch.APS- SS  <<<<<<......<<<<<<<...>>>>>.......<<<<<<

Buch.APS-	AGCUCCACCA
#=GR Buch.APS- SS	<<<<<<....

//
# STOCKHOLM 1.0

#=GS Burk.cepa DE converted from Zweib's tmRNA dataset 

Burk.cepa		GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUA
#=GR Burk.cepa SS  >>>>>>>............>>>>>>>......>>>>>>>

Burk.cepa	GGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAA
#=GR Burk.cepa SS  >.>>>>>>>>>>>.AAAAA..<<<<<.......aaaaa..

Burk.cepa	AAUCGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCC
#=GR Burk.cepa SS  ................................>>>>.>..

Burk.cepa	UAAGGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAG
#=GR Burk.cepa SS  ......<.<<<<.>>>>>>.>>>>>>..BBBBBB<<<<<<

Burk.cepa	UGUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUUUAC
#=GR Burk.cepa SS  ............>>>>....<<<<..<<<<<<.......b

Burk.cepa	GUCAGUUAAGCCCUGUCGGCGUCGCGACGCCAGGGUCGAA
#=GR Burk.cepa SS  bbbbb....>>>>>>.>>...CCCC..<<.<<<<<.<...

Burk.cepa	AAUCUAGCGAAUCGCCGUAGUGCAGCGUGUUCGUCCGCGU
#=GR Burk.cepa SS  ......cccc...>>>>>>>>>..>>>.DDDDDDD<<<..

Burk.cepa	CGCUGCGGUUAAAUCAAAAGACUGGACUAAACAUGUAGAA
#=GR Burk.cepa SS  <<<<<<<<<..........ddd.dddd...<<<<<<....

Burk.cepa	CUAGUCGUGGAGCGCUUCUGGACGCGGGUUCGAUUCCCGC
#=GR Burk.cepa SS  <<<<<<<<.....<<<<<<<...>>>>>.......<<<<<

Burk.cepa	CGCCUCCACCA
#=GR Burk.cepa SS	<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Camp.jeju DE converted from Zweib's tmRNA dataset 

Camp.jeju		GGGAGCGACUUGGCUUCGACAGGAGUAAGUCUGCUUAGA
#=GR Camp.jeju SS  >>>>>>>............>>>>>>>>......>>>>>>

Camp.jeju	UGGCAUGUCGCUUUGGGCAAAGCGUAAAAAGCCCAAAUAA
#=GR Camp.jeju SS  >.>>>>>>>>>>>AAAAA.<<<<<......aaaaa.....

Camp.jeju	AAUUAAACGCAAACAACGUUAAAUUCGCUCCUGCUUACGC
#=GR Camp.jeju SS  ........................................

Camp.jeju	UAAAGCUGCGUAAGUUCAGUUGAGCCUGAAAUUUAAGUCA
#=GR Camp.jeju SS  >..>>>>>........<<<<<..<.>>>>>>.>>>>>>.>

Camp.jeju	UACUAUCUAGCUUAAUUUUCGGUCAUUUUUGAUAGUGUAG
#=GR Camp.jeju SS  .BBBBBB<.<<<<<<.<<<<<<........bbbbbb...>

Camp.jeju	CCUUGCGUUUGACAAGCGUUGAGGUGAAAUAAAGUCUUAG
#=GR Camp.jeju SS  >>>>>.>>.>CCC..<.<<<<<<<<........ccc...>

Camp.jeju	CCUUGCUUUUGAGUUUUGGAAGAUGAGCGAAGUAGGGUGA
#=GR Camp.jeju SS  >>>>>>>>>...>>>...D.DDDDD<<<<<<<<<<<<<..

Camp.jeju	AGUAGUCAUCUUUGCUAAGCAUGUAGAGGUCUUUGUGGGA
#=GR Camp.jeju SS  ......ddd..dd.d...<<<<<<....<<<....<<<<.

Camp.jeju	UUAUUUUUGGACAGGGGUUCGAUUCCCCUCGCUUCCACCA
#=GR Camp.jeju SS	.<<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Carb.hydr DE converted from Zweib's tmRNA dataset 

Carb.hydr		GGGGGCGUAAAGGGUUCGACGGGGGAGCGAAGGGCCGAA
#=GR Carb.hydr SS  >>>>>>>............>>>>>..>>...>>>>>..>

Carb.hydr	AGUAGCGAGGCGAGGACCCCAUCUUACCUCGUUAAAAAUG
#=GR Carb.hydr SS  >>>..>>>>>AAAAA..>>>>>>...aaaaa........<

Carb.hydr	GUGGGAAAAGAUAACUGCCAACGAAAACUACGCUUUAGCU
#=GR Carb.hydr SS  <<<<<..........................>..>>.>>.

Carb.hydr	GCUUAAUAACGCAGCUACGUCCUGACGGAAGCUUGCCCGG
#=GR Carb.hydr SS  >........<<<<<.<.>>>>>>>>>>>>>>>>.BBBBBB

Carb.hydr	GGCUUCUGUCGGGGCGUGACCGGACCGGGCUGGCUUAUGA
#=GR Carb.hydr SS  <<<<<<<<<<<<<<<<........bbbbbb..>>>>>>>>

Carb.hydr	AGGGUGUCCCGGCUCUUCAUAAGCGAGAUUUUACGGGAUA
#=GR Carb.hydr SS  >>>>>CCCCCC<<<<<<<<<<<<<.........cccccc.

Carb.hydr	GCCCGAUUGUGGCCUGCCGGUAGGCACCAAUCGGGUGAAA
#=GR Carb.hydr SS  .>>>>>>>>.>>>>.DDDDDDD<<<.<<<<<<<<<.....

Carb.hydr	GCAAAAAUACCGGCUGCCCUCGGAGAAGCUUUCGGUUCUU
#=GR Carb.hydr SS  .......ddddddd...<<<<<.....<<<<..<<<<<..

Carb.hydr	GUCCUCCGGACGGUGGGUUCGAUUCCCCCCGCCUCCACCA
#=GR Carb.hydr SS	<<.<<<<<....>.>>>.......<<<.<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Caul.cres DE converted from Zweib's tmRNA dataset 

Caul.cres		GGGGCCGAUCAGCAUCGACAGACGUGUAAAGGUGUCUGC
#=GR Caul.cres SS  >>>>>>>...........>>>.>>>......>>>>.>>>

Caul.cres	UUUCUCUCGGCUUGGCCCACCGUUUCGGGCCUUUAUCUAA
#=GR Caul.cres SS  ..>>>>>.AAA..>>>>>...aaa..<<<<<.........

Caul.cres	AUGCGAACGAUAACUUCGCUGAAGAGUUCGCCGUCGCUGC
#=GR Caul.cres SS  ..........................>>>>>>..>>>>>.

Caul.cres	GUAAUGCGGUGCAGGUGAAUUCGCCUCUUAAGUCCUAGGG
#=GR Caul.cres SS  ......<<<<<..<<<<<<.......BB.BB....>>>>>

Caul.cres	GUUCAGAUCCCUAGGCGGGGCCCGGAGGGAGCCUGCCAAC
#=GR Caul.cres SS  >bb.bb.<<<<<<.C..CCCC..>>>>>>>cccc..c...

Caul.cres	AGAAUCCCUCCACCUGUCCGGCUUCGGCCGAACUAUGGGG
#=GR Caul.cres SS  ....<<<<<<<....>>.>>>>....<<<<.<<...<<<<

Caul.cres	AUAAACGCGCACGUAAUAAGCGGACUGGACCCGGGUGCGA
#=GR Caul.cres SS  <.....<<<.<<<<.....<<<..<<<...>>>>>.....

Caul.cres	UUCCCGGCGGCUCCACCA
#=GR Caul.cres SS	..<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Chla.abor DE converted from Zweib's tmRNA dataset 

Chla.abor		GGGGGUGUAUAGGUUUCGACUUAGGAAUGAAGUGUUAAU
#=GR Chla.abor SS  >>>>>>>............>>>>>.>>.....>>>>>>>

Chla.abor	CGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGAC
#=GR Chla.abor SS  .>>>>>>AAAAA..>>>>>>>..aaaaa.....<<<<<<<

Chla.abor	AAAACAAUAAAUGCCGAACCUAAGGCUAAAUGCGAAAUUA
#=GR Chla.abor SS  ........................................

Chla.abor	UCAGUUUCUCUGAACUCUCUGAGCAAAGAUUAGCUGCUUA
#=GR Chla.abor SS  ........................>>>.>.>>>>>.....

Chla.abor	AUUAGCAAAAGUUGUUAUUUAGAUAACCUCUAGAUAACCC
#=GR Chla.abor SS  .........<<<<<.<.<<<...................>

Chla.abor	GGUCUUCAUGGACUCUACCAGAGGUUUGUGAAGUACCGUC
#=GR Chla.abor SS  >>>.>>>>>>>>>>..BBBBBB<<<<<<<<<.<.<<<<..

Chla.abor	AUCUAUCUGGUUGGAAUCUACCUCCUCUAAUUCUCAAGGG
#=GR Chla.abor SS  .....bbbbbb..>>>>..>>>>>>>...CCCCCCC<<<<

Chla.abor	GGUUUAUUCGAGAUUAUUGAGAAUCGUUGGUUUCCAUAGA
#=GR Chla.abor SS  <<<..<<<<........ccccccc>>>>>>>>>>..>>>.

Chla.abor	UGUUCUUAGCUGAGGAAAUGCAACGUUAGACUACUAGGGA
#=GR Chla.abor SS  ..DDDDDDD<<<..<<<<<.<<<<<........ddddddd

Chla.abor	CUAAGCAUGUAGAAGUUAGCAGGGAGUUUACUAAGGACGA
#=GR Chla.abor SS  ....<<<<<<....<<<<<<<......<<.<<<<<...>>

Chla.abor	GAGUUCGAGUCUCUCCACCUCCACCA
#=GR Chla.abor SS	>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Chlo.tepi DE converted from Zweib's tmRNA dataset 

Chlo.tepi		GGGGAUGACAGGCUAUCGACAGGAUAGGUGUGAGAUGUC
#=GR Chlo.tepi SS  >>>>>>>............>>>>>>>.......>>>>>.

Chlo.tepi	GUUGCACUCCGAGUUUCAGCAUGGACGGACUCGUUAAACA
#=GR Chlo.tepi SS  >>>>>>>>>AAAAA.....>>>>>>>..aaaaa.......

Chlo.tepi	AGUCUAUGUACCAAUAGAUGCAGACGAUUAUUCGUAUGCA
#=GR Chlo.tepi SS  .<<<<<<<.............................>.>

Chlo.tepi	AUGGCUGCCUGAUUAGCACAAGUUAAUUCAGAAGCCAUCG
#=GR Chlo.tepi SS  >>.>>>..............<<<..<<<<...........

Chlo.tepi	UCCUGCGGUGAAUGCGCUUACUCUGAAGCCGCCGGAUGGC
#=GR Chlo.tepi SS  ............>>.>>>>..>.>>>>>>>>..B..<<<<

Chlo.tepi	AUAACCCGCGCUUGAGCCUACGGGUUCGCGCAAGUAAGCU
#=GR Chlo.tepi SS  .<.........<<<.<.....<<<<.<<......b....>

Chlo.tepi	CCGUACAUUCAUGCCCGAGGGGGUGUGCGGGUAACCAAUC
#=GR Chlo.tepi SS  >>>>>>>>>>.>.CCCCC<.<<<<<<<<<<<.......cc

Chlo.tepi	GGGAUAAGGGGACGAACGCUGCUGGCGGUGUAAUCGGACC
#=GR Chlo.tepi SS  ccc.....DD..DDD....D.>>>>.>>>d...ddd..dd

Chlo.tepi	ACGAAAAACCAACCACCAGAGAUGAGUGUGGUAACUGCAU
#=GR Chlo.tepi SS  ...........<<<.<<<<....<<<<<<...<<<.<<<<

Chlo.tepi	CGAGCAGUGUCCUGGACGCGGGUUCAAGUCCCGCCAUCUC
#=GR Chlo.tepi SS  <......<<<<<<<...>>>>>.......<<<<<<<<<<<

Chlo.tepi	CACCA
#=GR Chlo.tepi SS	<....

//
# STOCKHOLM 1.0

#=GS Clos.acet.-1.pa DE converted from Zweib's tmRNA dataset 

Clos.acet.-1.pa		AAUCUGGCGUCGAGAGCGGGGAAACGAGCCUUACAAAGC
#=GR Clos.acet.-1.pa SS  ........................>>..>>>>>>..AAA

Clos.acet.-1.pa	UUUGAGUAAGGAACGGAAUUUAUGAAGCUACUGAAGUGAA
#=GR Clos.acet.-1.pa SS  AAA..<<<<<<..<<........aaaaaa..>...>>>>>

Clos.acet.-1.pa	AAGCUUGUUUGUAGGCGUUUCAUGGAGGGAAUGUUAAAAU
#=GR Clos.acet.-1.pa SS  >.>>>.BBBBBBB<<<.<<<<<<...<............b

Clos.acet.-1.pa	ACAAACUGCACUCGGAGAUGCUUAAAUGAAACCAUUUUCG
#=GR Clos.acet.-1.pa SS  bbbbbb..................................

Clos.acet.-1.pa	GACAGGGGUUCGAUUCCCCUCGCCUCCACCA
#=GR Clos.acet.-1.pa SS	...>>>>>.......<<<<<...........

//
# STOCKHOLM 1.0

#=GS Clos.botu DE converted from Zweib's tmRNA dataset 

Clos.botu		GGGGGCGCAAUGGUUUCGACGGGGGCAAAUUGCUCCUGG
#=GR Clos.botu SS  >>>>>>>............>>>>>>>>......>>>>>>

Clos.botu	GAAGCGAGUCGAAGGGAUCCUGUACCUGCGUUAAAAAACU
#=GR Clos.botu SS  >.>.>>>>>AA.AA...>>>.>>..aa.aa.......<<.

Clos.botu	GGGAACUUAAAUAUAAUUGCAAACGAUAAUUUUGCAUUAG
#=GR Clos.botu SS  <<<.............................>>.>>.>>

Clos.botu	CUGCCUAAUAGUUGCAGCUCGUCAGCCUAAGAGUCCCACG
#=GR Clos.botu SS  >>>...........<<<<<.<<<<>>>>>>>..BBBBBB.

Clos.botu	ACUUAGGGUCUGGCGUCGACAGUGGGGAACCGAGUCUUAC
#=GR Clos.botu SS  .<<<<<......<<.......bbbbbb..>>>..>>>>>>

Clos.botu	AAAGCUUUGAGUAAGGAACGGAAUUAAUGAAGCUACUGAA
#=GR Clos.botu SS  ..CCCCCC..<<<<<<..<<<.......cccccc.>>...

Clos.botu	UCUAGGAGCCUGUUUAUCGGCGCUUAGAGGAGGGAAUGUA
#=GR Clos.botu SS  >>>>>..>>>.DDDDDDD<<<..<<<<<...<<.......

Clos.botu	AAAGGAUAAACUGCACUCGGAGAUGCCCAGGGGUUGCUGC
#=GR Clos.botu SS  ....ddddddd...<<<<<....<.<<<<<<<.....<<<

Clos.botu	UUUCGGACAGGGGUUCGAUUCCCCUCGCCUCCACCA
#=GR Clos.botu SS	<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Clos.diff DE converted from Zweib's tmRNA dataset 

Clos.diff		GGGGCGUAAAGGUUUCGACGUGGGUUUGGAACUUGAGGC
#=GR Clos.diff SS  >>>>>>............>>>>>>>>.....>>>>..>>

Clos.diff	UGCAUGUCGUGUUACUCUGGGUCACGUAAAAACUGGGGAA
#=GR Clos.diff SS  .>>>>>>AAAA...>>>>>>..aaaa......<<<<<<..

Clos.diff	CUUUAAAAUAAACGCAGACGAUAAUUUCGCGAUAGCAGCC
#=GR Clos.diff SS  ..............................>.>>>>>>..

Clos.diff	UAGUUGCUGCUCGUCCCUCUUAGUCCUCCUGCCGACUAAG
#=GR Clos.diff SS  ...<<<<<<.<>>>>>.>>>>>>>>.BBBBBB.<<<<<<<

Clos.diff	ACUGGACGUCAUUAUGCAGGGAACUACUUUAGGGGUGUCU
#=GR Clos.diff SS  <..<<<<<.......bbbbbb..>>>>>>>>>>...CCCC

Clos.diff	CGACUUGAAGUAGAUUAAUUGGGACUGGCUAAGCAUAGAG
#=GR Clos.diff SS  C..<<<<<<<<<<.......ccccc...>>..>>>>>>.>

Clos.diff	CCUGCCACUUGGCGCUAUGUGAGGUGAGAUAUUAGUGAAG
#=GR Clos.diff SS  >>.DDDDDDD<<<.<<<<<<..<<.............ddd

Clos.diff	UUGGCUAAGCAUGUAGAUGCAGCAAGGAAAAGAUUUGCGG
#=GR Clos.diff SS  .dddd...<<<<<<....<<..<<<<.....<<<<<<<<.

Clos.diff	ACAGGGGUUCGACUCCCCUCGUCUCCACCA
#=GR Clos.diff SS	..>>>>>.......<<<<<<<.<<<<....

//
# STOCKHOLM 1.0

#=GS Clos.perf DE converted from Zweib's tmRNA dataset 

Clos.perf		GGGGGCGUUUUGGCUUCGACGGGGGUAAGAUGGGUUUGA
#=GR Clos.perf SS  >>>>>>>............>>>>>>>>.>.>>>....>>

Clos.perf	UAAGCGAGUCGAGGGAAGCAUGGUGCCUCGAUAAUAAAGU
#=GR Clos.perf SS  >..>>>>>>AAAAA...>>>>>.>.aaaaa.......<.<

Clos.perf	AUGCAUUAAAGAUAAACGCAGAAGAUAAUUUUGCAUUAGC
#=GR Clos.perf SS  <<<<............................>.>>.>>>

Clos.perf	AGCUUAAUUUAGCGCUGCUCAUCCUUCCUCAAUUGCCCAC
#=GR Clos.perf SS  >>............<<<<<.<<<.>>>>>>>>>..BBBBB

Clos.perf	GGUUGAGAGUAAGGGUGUCAUUUAAAAGUGGGGAACCGAG
#=GR Clos.perf SS  .<<<<<<.....<<<............bbbbb...>>>..

Clos.perf	CCUAGCAAAGCUUUGAGCUAGGAACGGAAUUUAUGAAGCU
#=GR Clos.perf SS  >>>>>>..CCCCCC..<<<<<<..<<<.......cccccc

Clos.perf	UACCAAAGAGGAAGUUUGUCUGUGGACGUUCUCUGAGGGA
#=GR Clos.perf SS  >..>>.>>>>...>>..DDDDDDD.<<.<<<<.<<..<..

Clos.perf	AUUUUAAAACACAAGACUACACUCGUAGAAAGUCUUACUG
#=GR Clos.perf SS  .........ddd.dddd...<<<<<<.....<<<<<<.<.

Clos.perf	GUCUGCUUUCGGACACGGGUUCGACACCCGUCGCCUCCAC
#=GR Clos.perf SS  ...<<<<<<<<...>>>>>.......<<<<<<<<<<<<..

Clos.perf	CA
#=GR Clos.perf SS	..

//
# STOCKHOLM 1.0

#=GS Clos.ther DE converted from Zweib's tmRNA dataset 

Clos.ther		GGGGGCGUAUUGGUUUCGACGGGAUUGUUGAAGCUUGAG
#=GR Clos.ther SS  >>>>>>>............>>>>>>>>.......>>>>>

Clos.ther	UAGCGGGUAGAGGAUUCUCGUUGGCCUCUUUAAAAAACGA
#=GR Clos.ther SS  >..>>>>>AAAAA.>>>>>>>...aaaaa.......<<<<

Clos.ther	GAAACUAAAAUAAACGCUAACGAAGAUAAUUACGCUUUAG
#=GR Clos.ther SS  <<<.................................>>.>

Clos.ther	CUGCUGCCUAAUAUAGGCAGCCCGUCAGUCCAGGGUUCCU
#=GR Clos.ther SS  >.>>>>...........<<<<..<<.<<..>>>>>.....

Clos.ther	GCGCCUUGGGUAGCUGGCGUCAUUAAGUCAGGCCUUUUGA
#=GR Clos.ther SS  ..>>>>>>>>....BBBB..<.<<<....<<<<.<<<<<.

Clos.ther	GUGGGAAGGUUAAACUCUAGAACUGUCACAGUGGUAGCCU
#=GR Clos.ther SS  ........bbbb..........>>>>>>>>>>.CCCCCCC

Clos.ther	UGAGCUGUGAUGGAUUUUAAAGGCUACUGAUAUCCAAAGC
#=GR Clos.ther SS  C.<.<<<<<<<<<......cccccccc>..>>>>>>....

Clos.ther	CUGCCCAUGGGCGUUGGGUUGAGGGAAUUUUUAAAACAUG
#=GR Clos.ther SS  >..DDDDD..<...<<<<<.<..<...........d..dd

Clos.ther	GGCUGCACCCGGAGAAGCUCUUGUGGAUACGAUUUCGGAC
#=GR Clos.ther SS  dd....<<<<<.....<<<....<<<...<<<<<<<<...

Clos.ther	AGGGGUUCGACUCCCCUCGCCUCCACCA
#=GR Clos.ther SS	>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Colw.spec DE converted from Zweib's tmRNA dataset 

Colw.spec		GGGGCGGAUCUAGGAUUCGACAAGAUUCAUGAAACUCAA
#=GR Colw.spec SS  >>>>>>>.............>>>>>..>.......>>..

Colw.spec	GGUGCAUGCCCAGGGGCGGUUUGCCUGGUAAAAAGCCGCA
#=GR Colw.spec SS  >>>>>>>>>AAAAA.>>>>>>>.aaaaa....<<<<<<<.

Colw.spec	AAACUAUAAUUGCUAACGACGAUACGUUCGCACUAGCCGC
#=GR Colw.spec SS  ................................>.>>>.>.

Colw.spec	UUAGGCUAGCCAUCGCCUUGAAAUCUCUCCUAUUGGUUAG
#=GR Colw.spec SS  ............<.<<.<.<...>>..>........BB.B

Colw.spec	AGGAUCGAUGGUCACCCCAAAUAGGAUAGCGAGGGAAGCA
#=GR Colw.spec SS  ......<..<<..........b.bb...>>>.....>>>.

Colw.spec	CGCUUGAGGCUGAACCGCGAAAUAGUAUCAAGCUCACCAU
#=GR Colw.spec SS  .CCCCCC.<<<....<<<.........cccccc....>..

Colw.spec	GACGAAGCCUGUCGCUUGGCGUCUAAUUGGUUAAAUAAAU
#=GR Colw.spec SS  >..>.>>>>.DDDDDDD<<<.<.<..<..<..........

Colw.spec	GAGCGACUAAGCAUGUAGUACCGAGAACGUAGGCUUUUUG
#=GR Colw.spec SS  ddddddd...<<<<<<...<<<..<<......<..<<<<<

Colw.spec	GACGGGGGUUCGAUUCCCCCCCGCUCCACCA
#=GR Colw.spec SS	...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Coma.test DE converted from Zweib's tmRNA dataset 

Coma.test		GGGGCCGAUUCUGGAUUCGACGUGGGUUCGGGACCGGUG
#=GR Coma.test SS  >>>>>>>.............>>>>>>>>.....>>>>.>

Coma.test	CGGUGCAUGUCGAGCUUGAGUGACGCUCGUAAAUCUCCAU
#=GR Coma.test SS  >>>.>>>>>>>>>>>..AAAAA..<<<<<........aaa

Coma.test	UCAAAAAACUAACUGCAAACGACGAACGUUUCGCACUCGC
#=GR Coma.test SS  aa.................................>>>>>

Coma.test	CGCUUAAUCCGGUGAGCCUUGCAACAGCACGCUAGUGGGC
#=GR Coma.test SS  >>.......<<<<<<<>>>>>>>.>>>>...BBBBBB.<<

Coma.test	UGGGCAAGGGGGUAGCAAUACCUCCCGGCUGCAAGGGAAU
#=GR Coma.test SS  <<........>>>>....<<<<.......<<<<<<<....

Coma.test	UUUCAUUAGCUGGCUGGAUACCGGGCUUCUUGGUAUUUGG
#=GR Coma.test SS  ...bbbbbb>>.>>>>>>>>>>>.CCCCCC<<<<<<<<<<

Coma.test	CGAGAUUUUAGGAAGCUGGCUACCCAAGCAGCGUGUGCCU
#=GR Coma.test SS  <.<<......cccccc..>>>>>>>>>>...>>.DDDDDD

Coma.test	GCGGGGUUUGGGUGGUGAGAUUUAAAACAGAGCACUAAAC
#=GR Coma.test SS  D<<...<<<<<<<<<<...........ddd.dddd...<<

Coma.test	AUGUAGAUCUGUCCGGCGAAGGCUUACGGACGCGGGUUCA
#=GR Coma.test SS  <<<<....<<<<<<<<....<<<<<<<<...>>>>>....

Coma.test	AUUCCCGCCGGCUCCACCA
#=GR Coma.test SS	...<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Cory.diph DE converted from Zweib's tmRNA dataset 

Cory.diph		GGGGCUGAUUUUGGUUUCGACUGCGUGCAUUAAGCUAGG
#=GR Cory.diph SS  >>>>>>>.............>>>>>..>>....>>>>>.

Cory.diph	GGAAGCGUGCCGGUGCAGGCUAGAGACCACCGAUUUUAAG
#=GR Cory.diph SS  >>...>>>>>>>>>>...AAAA..A..<<<<<........

Cory.diph	CGUCGUAGCAAAUAUAUAAGCGCAGAGAACACUCAGCGCG
#=GR Cory.diph SS  ..a..aaaa...............................

Cory.diph	ACUACGCCCUCGCUGCCUAAUUUGCAGCGACCUGCGUGUC
#=GR Cory.diph SS  .....>>.>>.>.>>............<<.<..<.<.<<.

Cory.diph	UGUCAGCCUAGAUUCGUCUCUGGUUUAGUGUCUGGCAUCG
#=GR Cory.diph SS  >>>>>>.>>>>>>>.BBBBBB<<<<<<<...<<<<<<...

Cory.diph	AUUAAGAGACUUGCUGGUUUGUUGUGUCAACGGGGCAAAC
#=GR Cory.diph SS  ....bbbbbb...>>>>>>>>>>..CCCC.CCC<<<<<<<

Cory.diph	UGGGACUUUCACCGAUGACUGGGCUCAUCAUCCGGGUGUG
#=GR Cory.diph SS  <<<........ccc.cccc..>>>>>.>>.....>....D

Cory.diph	UUCGUCCAAGCCGGAGAGCCGAGUAGAGAUCCACGCGCGA
#=GR Cory.diph SS  DDDDD.<.....<<.<<<<<................dddd

Cory.diph	ACUGCGCACGGAGAAGCCCUAGCGAGGUGACGUAGGACCC
#=GR Cory.diph SS  dd...<<<<<......<<<<<<<....<<.<<<<<...>>

Cory.diph	GGGUUCAAUUCCCGGCAGCUCCACCA
#=GR Cory.diph SS	>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Coxi.burn DE converted from Zweib's tmRNA dataset 

Coxi.burn		GGGGGCGACCAGGCUUCGACGUGGAUCCUGAAACCCGAG
#=GR Coxi.burn SS  >>>>>>>............>>>>>>>>......>>...>

Coxi.burn	ACGCAUGUCGAGCCGGCAACGAAGGCUCGUAAAUCCAUCA
#=GR Coxi.burn SS  >>>>>>>>>>>>>..AAAAA....<<<<<...........

Coxi.burn	GUUGCAAACAGAUAGUUGCAAACGAUAGUAAUUAUCUCCA
#=GR Coxi.burn SS  aaaaa...................................

Coxi.burn	AGAAGCUUACGCAUAAAGCUUCUUCCGUUGCUGGGAUUCG
#=GR Coxi.burn SS  .....>>>>.>>>...............<<<<<<<....>

Coxi.burn	CUUAUAGAUCCCUACCAACGGCCAUAGCAUAUAAGCUCGC
#=GR Coxi.burn SS  >>>>>...>..........BBBBBB<....<<<<<<....

Coxi.burn	CCUCAAGCAUGGCUCAUGACUUGAAGGUUAAACAGAAGAG
#=GR Coxi.burn SS  ........bbbbbb..>>>>>>..<<<<<<..........

Coxi.burn	CUCGCAGUCAAUUUCCCCUGCACGUCGGGCGAUUGACUGU
#=GR Coxi.burn SS  ...>>>>>>>>>>..>>>.CCC.CCC<<<.<<<<<<<<<<

Coxi.burn	UAAAUCAUAGACGAUGCUAAGCAUGUAGUGUCAACGGCGG
#=GR Coxi.burn SS  .........ccc..ccc...<<<<<<...<<<...<<...

Coxi.burn	AUGAUUUACGGACGCGGGUUCAAUUCCCGCCGCCUCCACC
#=GR Coxi.burn SS  ..<<<<<<<<...>>>>>.......<<<<<<<<<<<<...

Coxi.burn	A
#=GR Coxi.burn SS	.

//
# STOCKHOLM 1.0

#=GS Cyan.para.cy DE converted from Zweib's tmRNA dataset 

Cyan.para.cy		GGGGCUGUUUAGGUUUCGACGUUUUUUUCUAAUUAUGUU
#=GR Cyan.para.cy SS  >>>>>>>............>>>>>>>>....>>>>>.>>

Cyan.para.cy	UGUUAAGCAAGUCGAGGAUUUGUUCUAUCUCGAAAAUCAA
#=GR Cyan.para.cy SS  >>>...>>>>>>>>>>>..AA.AA...<<<<<......aa

Cyan.para.cy	GAACUCUCAAAAUUUAAACGCAACUAAUAUUGUACGUUUU
#=GR Cyan.para.cy SS  .aa.....................................

Cyan.para.cy	AACCGUAAAGCAGCUUUCGCUGUUUAAUAAUUACUUUUAA
#=GR Cyan.para.cy SS  ...........>>.>>>..>>>..................

Cyan.para.cy	UUUAAAAACCUAAUUUUUUUAGGAAUUUAUUUAUUUAUUG
#=GR Cyan.para.cy SS  ...................<<<<<<.<<....>>>>>>>>

Cyan.para.cy	UUUAUCCUGCUUAAUGAAUUAAAAAAAGCUAUACUUGUGA
#=GR Cyan.para.cy SS  ..>>...<<..<<<<<<<<.............<<<<<<..

Cyan.para.cy	AUAAACGCAUAAUUUAAAAAAACGGACGUGGGUUCAAAUC
#=GR Cyan.para.cy SS  <<<<<...<<<<<...<<<<<<<<...>>>>>.......<

Cyan.para.cy	CCACCAGCUCCACCA
#=GR Cyan.para.cy SS	<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Cyto.hutc DE converted from Zweib's tmRNA dataset 

Cyto.hutc		GGGGUCGACAGGAAUUGACAGGUUGAGUGAUUACGUGUG
#=GR Cyto.hutc SS  >>>>>>>...........>>>>..>>>.....>>>>>.>

Cyto.hutc	UAAGCAUGCAGGCUCAUGGGAUGAGAGCCUUAAAAGAUAG
#=GR Cyto.hutc SS  >..>>>>>>AAAAA..>>>>>>...aaaaa.........<

Cyto.hutc	UUCCGAACAAUAAUUGGCGAAGAAUCUUACGCCAUGGCUG
#=GR Cyto.hutc SS  <<<<<.........................>..>>>>>>.

Cyto.hutc	CUUAAUUACGAACUAAGUUUGUAAUAAUGAGCGUUGAGUG
#=GR Cyto.hutc SS  ...............<<<.<<<..<...............

Cyto.hutc	GAGCUGUUAAGAACAGCACCCGGCCACAUCUCACACGGCU
#=GR Cyto.hutc SS  .........................>>>>>>>.>>>>>>>

Cyto.hutc	UCUGUUCUGCGGGCUGUGAACUGAGAUGUCGAACAGCAGG
#=GR Cyto.hutc SS  >...BBBBB.<<<<<<<<....<<<<<<<...........

Cyto.hutc	ACUAGGGGAGUACAAGUUGCGGGUGCUUCGCGAAAUUAAG
#=GR Cyto.hutc SS  ..bbbbb..>>..>>>>...C..C<<<<.<<......c..

Cyto.hutc	UAACUAAGGUUAUAGUUGGGUGCCGGUGACCUGCUACAGC
#=GR Cyto.hutc SS  c......>>>>.>>>>..>>>DDDDDDD<<<.<<<<.<<<

Cyto.hutc	UCGAAAAUGAACAUCCGGCUAAGCAUGUAGAAGAUUCGAU
#=GR Cyto.hutc SS  <..........ddd.dddd...<<<<<<.....<<.<.<<

Cyto.hutc	AGUGGCCUUCUCUGGACGAGAGUUCGAAUCUCUCCGACUC
#=GR Cyto.hutc SS  .<<...<<<.<<<<...>>>>>.......<<<<<<<<<<<

Cyto.hutc	CACCA
#=GR Cyto.hutc SS	<....

//
# STOCKHOLM 1.0

#=GS Deha.ethe DE converted from Zweib's tmRNA dataset 

Deha.ethe		GGGGACGCGUGGUUUCGACAGGGAAGGUAGGCUACUGGA
#=GR Deha.ethe SS  >>>>>>>...........>>>>>.>>>..>>>>...>>>

Deha.ethe	UUGCAGGCUGAGGUGCCAUCCACCUCAUUAAACAGGUGGC
#=GR Deha.ethe SS  >>>>.>..AAAAA.>>>>>>..aaaaa.......<<<<<<

Deha.ethe	AAAAAACAACUGGCGAACGUGAACUCGUUCUUGCUGGCUA
#=GR Deha.ethe SS  ...........................>>...>..>>>>>

Deha.ethe	AAUAAGACAGCACAUCCUGCUUGGCCCCACCUCAACGGGU
#=GR Deha.ethe SS  .....................<<<<.<..<...<<.....

Deha.ethe	CAGGUUUGGGUGCCGAUUAGUUGAGGUGCCGUUUCCCCAA
#=GR Deha.ethe SS  ....>>>>.>>>..>...>>.....BB.BB..<<...<..

Deha.ethe	CGCCGAUGAGGGGGACGAAAGAAAUAUCGGCUGGUUUGGC
#=GR Deha.ethe SS  <<.<..<<<<.bb.bb.....................>.>

Deha.ethe	UAAAUUAGGCCGGCAAAAGCUAGCCAGACAAGAUUAAAUA
#=GR Deha.ethe SS  >...>>>.>>.C.C....<<<<<..<<.<...........

Deha.ethe	GACGGAUAAUCCUGUAGUAGAUCCUGGGUCACCUUUUCUG
#=GR Deha.ethe SS  ....c.c.......<.<<.<<<<<..<<<<..<<<<<<<<

Deha.ethe	GACGGGGAGUUCGACCCUCCCCCGUCUCCACCA
#=GR Deha.ethe SS	....>>>>>.......<<<<<.<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Dein.radi DE converted from Zweib's tmRNA dataset 

Dein.radi		GGGGGUGACCCGGUUUCGACAGGGGAACUGAAGGUGAUG
#=GR Dein.radi SS  >>>>>>>............>>>>>>.......>>>>.>>

Dein.radi	UUGCGUGUCGAGGUGCCGUUGGCCUCGUAAACAAACGGCA
#=GR Dein.radi SS  >.>>>>>>AAAAA.>>>>>>..aaaaa......<<<<<<.

Dein.radi	AAGCCAUUUAACUGGCAACCAGAACUACGCUCUCGCUGCU
#=GR Dein.radi SS  ..............................>>>>>>>...

Dein.radi	UAAGUGAGAUGACGACCGUGCAGCCCGGCCUUUGGCGUCG
#=GR Dein.radi SS  ..<<<<<<<>>..>>>>>>>.>>>>..BBBBBB<<<.<<<

Dein.radi	CGGAAGUCACUAAAAAAGAAGGCUAGCCCAGGCGAUUCUC
#=GR Dein.radi SS  <<...<<<..<<.....bbbbbb..CCC..CCC....>>>

Dein.radi	CAUAGCCGACGGCGAAACUUUAUGGAGCUACGGCCUGCGA
#=GR Dein.radi SS  >>>>ccc...ccc.......<<<<<<<....>>>>.>>>.

Dein.radi	GAACCUGCCCACUGGUGAGCGCCGGCCCGACAAUCAAACA
#=GR Dein.radi SS  ..>>>..DDDDDD<<<...<<<.<<<<............d

Dein.radi	GUGGGAUACACACGUAGACGCACGCUGGACGGACCUUUGG
#=GR Dein.radi SS  ddddd....<<<<<<....<<<<<<<.......<<<<<<.

Dein.radi	ACGGCGGUUCGACUCCGCCCACCUCCACCA
#=GR Dein.radi SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Desu.hafn DE converted from Zweib's tmRNA dataset 

Desu.hafn		GGGGGUGCACUGGCUUCGACGGGGGUCGCAAAAUCGCUU
#=GR Desu.hafn SS  >>>>>>>............>>>>>..>>.....>>.>>>

Desu.hafn	GGCGCAUGCCGAGGGGUAGCUUUCCUCGUAAAACAGCUGC
#=GR Desu.hafn SS  >>>>>>>>>AAAAA.>>>>>>..aaaaa......<<<<<<

Desu.hafn	AAAACUCUAGUUGCCAACGACGACAACUACGCUCUCGCCG
#=GR Desu.hafn SS  ..............................>>.>..>>.>

Desu.hafn	CUUAAGGCGUAAGCCCCGAAACUGCUUGUGUCCGUGCUCG
#=GR Desu.hafn SS  .....................<.<<..<.<<.....>>>>

Desu.hafn	CAGCGUAGGGUCACUAUCACGGAAUCGCCGGGAGCGGCCG
#=GR Desu.hafn SS  ..>>>>.>>BBB.BB.<<<<<....<..<<<<bb.bbb.>

Desu.hafn	CCUGCCAGCUCCCGUUCAACCUAUAGCAGGCUGGUCCUUG
#=GR Desu.hafn SS  >>.>>>......................<<<.<<<....>

Desu.hafn	GAUGCGCUUCGCGCGCCGUGCUGUCCCGGGACGAGAUCUA
#=GR Desu.hafn SS  ..>..>.>.>>>CCCCC<<<..<.<...<..<........

Desu.hafn	ACGGAGCGCUAAGCAUGUAGUGCCGGGGAUGGAGUGCCUU
#=GR Desu.hafn SS  ..cc..ccc...<<<<<<...<<<<<<<<.....<<.<<<

Desu.hafn	CGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
#=GR Desu.hafn SS	<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Desu.vulg DE converted from Zweib's tmRNA dataset 

Desu.vulg		GGGGGCGCACUGGUUUCGACGGGGACGUAGAAGCCGGAG
#=GR Desu.vulg SS  >>>>>>>............>>>>>>.>.....>.>>>>>

Desu.vulg	UUGCAGGCCGAGGCGCCGCUGGCCUCGUAAAAAGCGGCAC
#=GR Desu.vulg SS  >.>>>>>>AAAAA.>>>>>>..aaaaa.....<<<<<<..

Desu.vulg	AAAAGUAAUUGCCAACAAUUACGACUACGCUCUGGCUGCU
#=GR Desu.vulg SS  ..............................>.>>>>>>..

Desu.vulg	UAAUUGACGGCCACGUCGAACCGGUUCACGCCUGAUAGAC
#=GR Desu.vulg SS  .......<<<<<<.<.>>...>.>>>...>BBBBBB...<

Desu.vulg	CGGUGAGACGUAACUUCAUCAGGCUGGCAUCUGACGGCGC
#=GR Desu.vulg SS  .<<<<...<<.......bbbbbb...>>>>>>..>>..CC

Desu.vulg	UCGCCGCGAAGGGUGCGAGAAAAACAGGUGAGCUGGUCGA
#=GR Desu.vulg SS  CCCCC.<<..<<<<<<..........ccccccc>.>>>..

Desu.vulg	AGGUUGCCUGGUCGGGGGCGAAACCUGAGAUGACGAUUGU
#=GR Desu.vulg SS  >>>....>..DDDDD.D<.....<<<..<<<.<......d

Desu.vulg	ACUCGACCUAAGCCUGUAGACGCUUCGUGUGGAACAUUCU
#=GR Desu.vulg SS  .d.dddd....<<<<<<....<<<<<<<......<.<<<<

Desu.vulg	CGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
#=GR Desu.vulg SS	<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ehrl.chaf DE converted from Zweib's tmRNA dataset 

Ehrl.chaf		GGGGAUGAAACAGGAUCGACAUGCAUAGUAAAGGGGAUA
#=GR Ehrl.chaf SS  >>>>>>>............>>>>>>>.......>>>>..

Ehrl.chaf	GUUUUUGCUCGGUGAGAAAACAGCCGUUUAAAUGCUCAAA
#=GR Ehrl.chaf SS  >>>>>>>>>>>>>..AA..A..<<<<......a..aa...

Ehrl.chaf	AUUUAUAAGUGCAAACGAUAAUUUCGUUUUUGCUAAUGAU
#=GR Ehrl.chaf SS  ........................................

Ehrl.chaf	AAUAAUAGCAGUGCUAACUUAGUAGCUGCUUAGUUUUAUU
#=GR Ehrl.chaf SS  ...................>>>>>>.>>........<<<<

Ehrl.chaf	AUUAGCGCGGUUUUUUUAAGGGUUUUCCGGGCAACAGAAA
#=GR Ehrl.chaf SS  <<<<>>.>>>.......BBBBB....<<<.<<........

Ehrl.chaf	AACCCUUUUUUGUGCUUUUAGCACUAUGGCAAUAAAGGCA
#=GR Ehrl.chaf SS  ..bbbbb....>>>>.....<<<<...<<<<<...<<<<.

Ehrl.chaf	UCUUAAAAUAGAUGUAUUGGACCCGAGGGCAGUGCUCGGC
#=GR Ehrl.chaf SS  <<<<.......<<<<<<.<...>>>>>.......<<<<<<

Ehrl.chaf	AUCUCCACCA
#=GR Ehrl.chaf SS	<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ente.faec.-1 DE converted from Zweib's tmRNA dataset 

Ente.faec.-1		GGGGGCGUUACGGAUUCGACAGGCAUAGUUGAGCUUGAA
#=GR Ente.faec.-1 SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Ente.faec.-1	UUGCGUUUCGUAGGUUACGGCUACGUUAAAACGUUACAGU
#=GR Ente.faec.-1 SS  >>>>>>>>>>>>>AA.AAA.<<<<<......aaa.aa...

Ente.faec.-1	UAAAUAUAACUGCUAAAAACGAAAACAAUUCUUUCGCUUU
#=GR Ente.faec.-1 SS  ................................>>>>>>..

Ente.faec.-1	AGCUGCCUAAAAACCAGCUAGCGAAGAUCCUCCCGGCAUC
#=GR Ente.faec.-1 SS  .>>>>.........<<<<.<<<<<<>>>>>>>>>>>>>>.

Ente.faec.-1	GCCCAUGUGCUCGGGUCAGGGUCCUAAUCGAAGUGGGAUA
#=GR Ente.faec.-1 SS  .BBBBB<<<<<.<<<..<<<<<<.........bbbbb...

Ente.faec.-1	CGCUAAAUUUUUCCGUCUGUAAAAUUUAGAGGAGCUUACC
#=GR Ente.faec.-1 SS  ..>>>>>>>>>...CCCCC.<<<<<<<<<..........c

Ente.faec.-1	AGACUAGCAAUACAGAAUGCCUGUCACUCGGCACGCUGUA
#=GR Ente.faec.-1 SS  cccc..>>..>>>>>...>>>.D.DDDDD<<<...<<<<<

Ente.faec.-1	AAGCGAACCUUUAAAUGAGUGUCUAUGAACGUAGAGAUUU
#=GR Ente.faec.-1 SS  ..<<............ddddd.d...<<<<<<...<<<<<

Ente.faec.-1	AAGUGGCAAUAUGUUUGGACGCGGGUUCGACUCCCGCCGU
#=GR Ente.faec.-1 SS  <<<<.....<<<<<<<<...>>>>>.......<<<<<<<<

Ente.faec.-1	CUCCACCA
#=GR Ente.faec.-1 SS	<<<<....

//
# STOCKHOLM 1.0

#=GS Erwi.caro DE converted from Zweib's tmRNA dataset 

Erwi.caro		GGGGCUGAUUCUGGAUUCGACGGGAUUUGCAAAGCCCAA
#=GR Erwi.caro SS  >>>>>>>.............>>>>>>>......>>>...

Erwi.caro	GGUGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCA
#=GR Erwi.caro SS  >>>>>>>>>AAAAA.>>>>>>>.aaaaa....<<<<<<<.

Erwi.caro	AAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGC
#=GR Erwi.caro SS  .............................>>>>>.>>>>.

Erwi.caro	UUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCCUCCGCU
#=GR Erwi.caro SS  ........<<<<..<<<<<>>>>>>>>>>>..>>>...BB

Erwi.caro	CUUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAU
#=GR Erwi.caro SS  BBB<<<..<<<<....<<<<<<<..........bbbbb..

Erwi.caro	CGCGUGGAUGCCCUGCCUGGGGUUGAAGGGCUAAAUCUAA
#=GR Erwi.caro SS  .>>.>....>>>..CCCCCC<<<....<.<<.........

Erwi.caro	UCAGGCUAGUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGC
#=GR Erwi.caro SS  cccccc..>>>>>>>>>>.>>>.DDD.DDD<<<.<<<<<<

Erwi.caro	AAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGACGG
#=GR Erwi.caro SS  <<<<.........ddd.ddd...<<<<<<...<<<...<<

Erwi.caro	UAGAGUAGUUCCGGACGGGGGUUCAAAUCCCCCCAGCUCC
#=GR Erwi.caro SS  <.....<<<<<<<...>>>>>.......<<<<<<<<<<<<

Erwi.caro	ACCA
#=GR Erwi.caro SS	....

//
# STOCKHOLM 1.0

#=GS Fibb.succ DE converted from Zweib's tmRNA dataset 

Fibb.succ		GGGGGUGCUCUGGUUUCGACAGGGUUACCGAAGUGUUAG
#=GR Fibb.succ SS  >>>>>>>............>>>>>>>>.....>>.>>..

Fibb.succ	UUGCAAGUCGAGGUCUCAGACGAGGGCAACUCGUUAAAAA
#=GR Fibb.succ SS  .>>>....>>>>...A.A....>>>.>...a.a.......

Fibb.succ	GUCUGAAAAAAAAUAAGUGCUGACGAAAACUACGCACUCG
#=GR Fibb.succ SS  <<<<.................................>>>

Fibb.succ	CUGCCUAAUUAACGGCAACGCCGGGCCUCAUUCCGCUCCC
#=GR Fibb.succ SS  .>>......<<.<<<.....>>>>>>..>>>>>>>.BBBB

Fibb.succ	AUCGGGAUGUACGUCCGGACGCAAUAUGGGAUAGGGAAGU
#=GR Fibb.succ SS  BB<<<<<<<...<<<<<<.......bbbbbb...>>.>>.

Fibb.succ	GUCAUGCCUGGGGGCAUCUCCCGAGAUUUACUAGGCUGGU
#=GR Fibb.succ SS  ...>>>>CCCC.C<<<<<<.<<.........c...cccc.

Fibb.succ	CAAACUCCGCGCCGACCUUCUUGGGCGUGGAUAAGACGAG
#=GR Fibb.succ SS  .....>>>>>>>>....DDDDDD<<<<<<<<.........

Fibb.succ	AUCUUAAAUACGAAGGGAACACUUGUAGGAACGUACAUGG
#=GR Fibb.succ SS  ........dd...dddd....<<<<.......<<<...<<

Fibb.succ	ACGUGAUUUUGGACAGGGGUUCGACUCCCCUCACCUCCAC
#=GR Fibb.succ SS  <<.<<<<<<<<...>>>>>.......<<<<<<<<<<<<..

Fibb.succ	CA
#=GR Fibb.succ SS	..

//
# STOCKHOLM 1.0

#=GS Fran.tula DE converted from Zweib's tmRNA dataset 

Fran.tula		GGGGGCGAAUAUGGUUUCGACAUGAAUGUCAAAAUCUAA
#=GR Fran.tula SS  >>>>>>>.............>>>>>>>......>>>>..

Fran.tula	GGUGCAUGCCGAGGAAGUACCGUAACCUCGUUAAUAACAG
#=GR Fran.tula SS  >>.>>>>>>AAAAA..>>>>.>>..aaaaa......<<.<

Fran.tula	UACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCAAACCG
#=GR Fran.tula SS  <<<.....................................

Fran.tula	CGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAA
#=GR Fran.tula SS  ....................................>.>>

Fran.tula	GCUGCCUAGUCUAGCUUAAUAAUCUAGAUGCGCACGGAUA
#=GR Fran.tula SS  >>>>.......<<<<<<.<.......>>>>.>.>>>>>>>

Fran.tula	UGAUAGUCUUUCUUAUGACACUAUCUAUACAUCCGUUCAU
#=GR Fran.tula SS  >>>..BBBBB..<<<<<....>>....<<..<<<<<.<.<

Fran.tula	AUUCCGCAUAAGACGGUCUUUGCUUUUUGUCUGGGAGUUA
#=GR Fran.tula SS  <<<......bbbbb....>>.>>>>>>>CCCCC<<<<...

Fran.tula	AGGCUGUAUUUAACAGACUCGCUAACUAUUACCCUGGCUA
#=GR Fran.tula SS  .<<<.<.<.....ccccc..>>>..>>>>>.>>>.DDDD.

Fran.tula	AUUGGGGAAUAGUCAAGCUAAACUCAAAUAGAUUAGCCUA
#=GR Fran.tula SS  DDD<<<.<<<<<...<<<............ddd.dddd..

Fran.tula	AGCAUGUAGAUCCAAAGAUCUAGAGUUUGUGGACGCGGGU
#=GR Fran.tula SS  .<<<<<<....<<..<<<<.....<<<<<<<...>>>>>.

Fran.tula	UCAAAUCCCGCCGCCUCCACCA
#=GR Fran.tula SS	......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Fuso.nucl.-1 DE converted from Zweib's tmRNA dataset 

Fuso.nucl.-1		GGGGAUGCAAAGGUUUCGACGGGGUUGUGAGGUUAUAGG
#=GR Fuso.nucl.-1 SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Fuso.nucl.-1	UAGCAAGUCAGGCUUGUCGCUGUGAGAGACUAAACACAUC
#=GR Fuso.nucl.-1 SS  >.>>>>>>AAA.A>>>>>aaaa.....<<<.<<.......

Fuso.nucl.-1	UUUUAGAUGGAAACAAAGAUUACGCUUUAGCUGCUUAGUU
#=GR Fuso.nucl.-1 SS  .......................>.>.>>>>>>.......

Fuso.nucl.-1	CAGCUACACCUUGGAUAACUUAUUCUAUACGGGUUUUUCA
#=GR Fuso.nucl.-1 SS  <<<<<<.<.<............>>.>>>.>>>.>.>.BBB

Fuso.nucl.-1	AAGGUGUUGACUAGUAUAGAUCACCAUAAAUGAUUUCUCU
#=GR Fuso.nucl.-1 SS  ...<.<<<<....<<<.<<...........bbb.....CC

Fuso.nucl.-1	AAGUUUAUGGGACAUUUUAGAGGAUAGUUUUAGUUAGCCC
#=GR Fuso.nucl.-1 SS  C..>>>>ccc.......<<<<.>>>>>>>.>......>..

Fuso.nucl.-1	UGUUUACGGGAGUAAUUAUUACGAAAUUUAAUAGUAAACU
#=GR Fuso.nucl.-1 SS  .DDDDDD<...<.<<<<<<<.............dddddd.

Fuso.nucl.-1	AAACUUGUAGAAGCUUAUGGUCAUUAUGAUUUCGGACACG
#=GR Fuso.nucl.-1 SS  ..<<<<<<....<<<<<<<<......<<<<<<<<...>>>

Fuso.nucl.-1	AGUUCGACUCUCGUCAUCUCCACCA
#=GR Fuso.nucl.-1 SS	>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Geob.meta DE converted from Zweib's tmRNA dataset 

Geob.meta		GGGGGUGUACAGGUUUCGACGGGGAUAGGAAACUAAAGG
#=GR Geob.meta SS  >>>>>>>............>>>>>>>.....>>..>.>>

Geob.meta	UUGCAUGCCGAGGUCCGGGCUGGCCUCGUUAAAAAGCCCG
#=GR Geob.meta SS  >.>>>>>>AAAAA.>>>>>>>..aaaaa......<<<<<<

Geob.meta	GGGCGAAUUACACGCCGAUAAUUACGACUACGCCGUAGCA
#=GR Geob.meta SS  <.................................>>>>>>

Geob.meta	GCUUAAUACCCUGCUACCGAUCCGCCGAGCCUCUCCCACG
#=GR Geob.meta SS  >.........<<<<<<<>>>>>>>>...>>>>..BBBBB<

Geob.meta	GGUGAAGAUGGAUCGUUAUUUCAGUGGGAUAGUCAAGGGG
#=GR Geob.meta SS  <<<...<.<<<<<<<........bbbbb...>>>..>>>>

Geob.meta	AGUGCCCGCGGCCCCAAGGCGAAACUUUAGCAGGAUCGCU
#=GR Geob.meta SS  .C..CCC....<<<<..<<<.........c..cc..c...

Geob.meta	UCCCGGAAAUCCCUGCCAGGGGAGAGUCGGGCGGCUAAAU
#=GR Geob.meta SS  ..>>>...>>>.>.DDDDDDD<.<.<<....<<<......

Geob.meta	CAAAUCCUGGCAUAAGCAUGUAGACGCCUUCUGUGUAUGA
#=GR Geob.meta SS  ....ddddddd....<<<<<<....<<<.<..<<.....<

Geob.meta	UCUUCGGACGCGGGUUCGACUCCCGCCACCUCCACCA
#=GR Geob.meta SS	<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Guil.thet.cl DE converted from Zweib's tmRNA dataset 

Guil.thet.cl		GGGGCUGAUUUGGAUUCGACAUAUAAAUUUGCGUGUUUC
#=GR Guil.thet.cl SS  >>>>>>>............>>>...>>.......>.>>>

Guil.thet.cl	AUUAUGAAGCAAGUCAAGUUUAAUGAUCUUGUAAAAAACA
#=GR Guil.thet.cl SS  >>>>>...>>>>>>AAAA>>>>>>>..aaaa.......<<

Guil.thet.cl	UUAAAGUACAAAUAAAUGCAAGCAAUAUAGUUUCAUUUAG
#=GR Guil.thet.cl SS  <<<<<...................................

Guil.thet.cl	UUCAAAACGUUUAGUCUCUUUUGCAUAAGCAAAAUGUGUU
#=GR Guil.thet.cl SS  ..........>>>>>.>.>>>>>......<<<<<.<.<<<

Guil.thet.cl	AAUAACUUUCUUAGUAGAAAUUGGAGAAGUUUACUAAGAU
#=GR Guil.thet.cl SS  <<..........>>>>.>>>>>>>.>.BBBB<.<<<<..<

Guil.thet.cl	UUAUAUUUACUCCAUAAUUAUUUUAAAGAUGGUAAAAAGG
#=GR Guil.thet.cl SS  <<.<<<<........bbbb................CC>>>

Guil.thet.cl	UGAUUCAUCAUUUGUAUGUUUCUAAACUUUGUGAAAGAAU
#=GR Guil.thet.cl SS  >>>cc.......<.<..<<<<....<<<.<<<......<<

Guil.thet.cl	AGUGGGCUCCAUUUAUAAUGAACGUGGGUUCAAAUCCCAC
#=GR Guil.thet.cl SS  <<<<<<.<....<<...<<<...>>>>>.......<<<<<

Guil.thet.cl	CAGCUCCACCA
#=GR Guil.thet.cl SS	<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Heli.pylo DE converted from Zweib's tmRNA dataset 

Heli.pylo		GGGGCUGACUUGGAUUUCGACAGAUUUCUUGUCGCACAG
#=GR Heli.pylo SS  >>>>>>>.............>>>>..>>.....>>>>>>

Heli.pylo	AUAGCAUGCCAAGCGCUGCUUGUAAAACAGCAACAAAAAU
#=GR Heli.pylo SS  >>.>>>>>>>>>>>AAA<<<<<......aaa.........

Heli.pylo	AACUGUAAACAACACAGAUUACGCUCCAGCUUACGCUAAA
#=GR Heli.pylo SS  .................................>.>>>>>

Heli.pylo	GCUGCGUGAGUUAAUCUCCUUUUGGAGCUGGACUGAUUAG
#=GR Heli.pylo SS  >..>...........<..<.<<<<<.<.>>>>.>>>>>>>

Heli.pylo	AAUUUCUAGCGUUUUAAUCGCUCCAUAACCUUAAGCUAGA
#=GR Heli.pylo SS  >>>.BBBBBB<<<<<<<<<<.<<<<.........bbbbbb

Heli.pylo	CGCUUUUAAAAGGUGGUUCGCCUUUUAAACUAAGAAACAA
#=GR Heli.pylo SS  ....>>>>>>>>>>CCCCC<<<<<<<<<<...........

Heli.pylo	GAACUCUUGAAACUAUCUCAAGGUUUUAGAAAGUUGGACC
#=GR Heli.pylo SS  ccccc....>>>>>>.>>>...>>>...DDDD.DDD<<<.

Heli.pylo	AGAGCUAGUUUUAAGGCUAAAAAACCAACCAAUUUUCUAA
#=GR Heli.pylo SS  .<<<.<<<<<<..................ddd.dddd...

Heli.pylo	GCAUUGUAGAAGUUUGUGUUUAGGGCAAGAUUUUUGGACU
#=GR Heli.pylo SS  <<<.<<<....<<<<<<<<.........<<..<<<<...>

Heli.pylo	GGGGUUCGAUUCCCCACAGCUCCACCA
#=GR Heli.pylo SS	>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Lact.gass DE converted from Zweib's tmRNA dataset 

Lact.gass		GGGGAUGUUUUGGGAUUCGACAGGCGUAGAUUCGCGUUG
#=GR Lact.gass SS  >>>>>>>.............>>>>>>>>......>>>>.

Lact.gass	ACUGCGAUUCGUAGGUCACGUCUACGUUAAAACGUCACAG
#=GR Lact.gass SS  .>>>>>>>>AAAAA>>.>>>>aaaaa.....<<<<.<<..

Lact.gass	UUAAAUUAUAACUGCAAAUAACGAAAAUUCUUACGCAGUA
#=GR Lact.gass SS  ................................>>>>...>

Lact.gass	GCUGCUUAGUCAGGCUGCGUGAUCCAAUGACGGAUUGCUC
#=GR Lact.gass SS  >>>.........<<<<<<<<>>>>>...>>>>>>>.BBBB

Lact.gass	GUGUCUGUCUGCGGGUCUUACCAUUUAACGAGCUACGUUU
#=GR Lact.gass SS  BB<<<<<<<...<<<<<..........bbbbbb....>>>

Lact.gass	AACUACUUACCUUAAUAGUUAGAAAUAAGAUUCUUAGGUU
#=GR Lact.gass SS  >>>>>.....CCCCC<<<<<<<<..........ccccc..

Lact.gass	AGUUUUGAUAGUUUAGCCCUGUUAUAUGGCGUUUUAUCAA
#=GR Lact.gass SS  .>>>>>>>>>>....>>>..DDDDDDD<<<...<<<<<<<

Lact.gass	AGCGAAGUUUAAGUAAUAUAACUAUGAUCGUAGAGGUUAA
#=GR Lact.gass SS  <<<............ddddddd...<<<<<<<<.....<<

Lact.gass	CGACGGAAUACGUUUGGACAGGGGUUCAAUUCCCCUCAUC
#=GR Lact.gass SS  <<......<<<<<<<<...>>>>>.......<<<<<<<<<

Lact.gass	UCCACCA
#=GR Lact.gass SS	<<<....

//
# STOCKHOLM 1.0

#=GS Lact.sake DE converted from Zweib's tmRNA dataset 

Lact.sake		GGGGCCGUUACGGAUUCGACAUGUGUAGGUGAGCGUGAA
#=GR Lact.sake SS  >>>>>>>............>>>>>>>>.....>>>>...

Lact.sake	UUGCACUUCGUAGGUUACGUCUGCGUUAACAACGUUACAG
#=GR Lact.sake SS  >>>>>>>>AAAAA>>.>>>>aaaaa......<<<<.<<..

Lact.sake	UUAAUUAUAACUGCAAACAAUAACAAUUCUUACGCUGUAG
#=GR Lact.sake SS  ...............................>>>>..>>>

Lact.sake	CUGCCUAAACACCAGCAUAGCGUGAUCCGUCUGACUUCAC
#=GR Lact.sake SS  >>...........<<<.<<<<<<>>>>>>>>>>>>>>.BB

Lact.sake	CCAAGGGUUAGAUCCGGGUCUCAAAUUAAUUGGGUUACGU
#=GR Lact.sake SS  BBBB<<<<<<<<..<<<<<<.........bbbbbb....>

Lact.sake	UAAAUGCCGCCGUUUGAAGUGUUUAAAAGAGAUUUUCAAG
#=GR Lact.sake SS  >>>>>>>....CCCCCC.<<<<<<<<.........ccccc

Lact.sake	CUAGUUAGUCCAUCCGAGCCUCUGUUGAACGGCGUUUUGG
#=GR Lact.sake SS  c..>>>>>>>>>.....>>>...DDDDDDD<<<....<<<

Lact.sake	GCUAGCGAAUUUCUAAAUAGUUCGACUAUGAGUGUAGAGA
#=GR Lact.sake SS  <<<<<<.............ddddddd...<<<<<<<<...

Lact.sake	UUGACGUGGCAAUGCGCAUGGACGCGGGUUCAACCCCCGC
#=GR Lact.sake SS  ...<<<<.....<<<<<<<<...>>>>>.......<<<<<

Lact.sake	CGGCUCCACCA
#=GR Lact.sake SS	<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Magn.magn.-2 DE converted from Zweib's tmRNA dataset 

Magn.magn.-2		GGGGGCGAAAUAGGAUCGACGUGCGCAGUAAAGGUCUGG
#=GR Magn.magn.-2 SS  >>>>>>>............>>>>>>........>>.>>>

Magn.magn.-2	UUUGCGUUCGGCAUGAUACCACCGUUAUCGGGUCAAUCCU
#=GR Magn.magn.-2 SS  >..>>>>>.AAA..>>>.>>...aaa...<<<<<......

Magn.magn.-2	AACAAGUGCCAACGACAACGUUGAACUUGCCGCUGCGGCU
#=GR Magn.magn.-2 SS  .................................>>>>>..

Magn.magn.-2	UAGUCCGUAAGCGCGGUCCGGGGGGAACCGGGCAACAGAA
#=GR Magn.magn.-2 SS  ....<<<<.<BB.BBBB..>>>>>>>bbbb.bb.......

Magn.magn.-2	CUCCCCCCACUUGCCGGGCAACCGGCUAUGACGCUAAACG
#=GR Magn.magn.-2 SS  .<<<<<<<..CC>>>>>..cc<<<<<...<<<<<.....<

Magn.magn.-2	CCACACGGAAUAGACGUUACGGACCCGGGGGCGGUACCCG
#=GR Magn.magn.-2 SS  <<<.<<........<<.<<<<...>>>>>.......<<<<

Magn.magn.-2	GCGCCUCCACCA
#=GR Magn.magn.-2 SS	<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Meso.loti DE converted from Zweib's tmRNA dataset 

Meso.loti		GGGGGCGAAAUAGGAUCGACGAAGGUGUAAAGAUCGUAC
#=GR Meso.loti SS  >>>>>>>............>>>>>>>......>>>>..>

Meso.loti	UUUUGCCCGGCAUUGUACCACCGUCAUCGGGCUAAACUUA
#=GR Meso.loti SS  >.>>>>>.AAA...>>.>>...aaa...<<<<........

Meso.loti	UAGUUGCCAACGACAACUAUGCGGAAGCACGUCUCGCUGC
#=GR Meso.loti SS  ..........................>>..>>>.>>>>>.

Meso.loti	UUAAUGCAGUGCGAUAGCUUCAAAUCAAGCCCUAGGGGUU
#=GR Meso.loti SS  ......<<<<<.<<<.<<......B.BB....>>>>>>bb

Meso.loti	CGCACUUCUAGGCGGGGUUCGGAGGUACCUGGCAACAGAA
#=GR Meso.loti SS  .b..<<<<<<.>>.>>>>..CCCCCC<<<<.<<.......

Meso.loti	ACCUCCACUUGUCGGCUUGACCGACUAUGGCGAUAAAUGG
#=GR Meso.loti SS  cccccc....>>>>>.>.<.<<<<<...<<<<<.....<<

Meso.loti	GCGAUGAAAUAAGCCGUUCGGACCCGGGGGCGGUACCCGG
#=GR Meso.loti SS  .<<<<.......<<<.<<<<...>>>>>.......<<<<<

Meso.loti	CGCCUCCACCA
#=GR Meso.loti SS	<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Meso.viri.cl DE converted from Zweib's tmRNA dataset 

Meso.viri.cl		GGGGUUGAAAUGGUUUCGACGUUUUAGUAUAUAUCUUCU
#=GR Meso.viri.cl SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Meso.viri.cl	UACAAGCAAGUCGAGAAUGAACCAAUCUCGUAAACUUGAG
#=GR Meso.viri.cl SS  >....>>>>>>>>>>>.AAAAA...<<<<<.........a

Meso.viri.cl	UUCAAUUGCAAAUAAAUGCUAACAAUAUUUUACCUUUUAA
#=GR Meso.viri.cl SS  aaaa....................................

Meso.viri.cl	UCGUAAGACAGCCGUAGCUGUUUAAAAGUUUUUUGAUAAC
#=GR Meso.viri.cl SS  ..........>..>>.>.>>.............<<.<.<<

Meso.viri.cl	UUCGAGCAUUUUUGAUUUGUUAAAUACAAUUGUUAUAAAA
#=GR Meso.viri.cl SS  ..<.........>.>>>>>.>>>>.....BBBBB......

Meso.viri.cl	CAAAUUAAAUAAUAGUUUUUGUUUCUUUACAAAUAAUGUA
#=GR Meso.viri.cl SS  .................<<<<........<<<<<.<....

Meso.viri.cl	GAAAUAAUUUUUUUUAGCUUUUCAAGCUCCAGCUUUGUGG
#=GR Meso.viri.cl SS  ..bbbbb...................CC...>>>>>>>cc

Meso.viri.cl	AUUAGCAAAGCUAAACUUGUGAAUACAAAGAAGAGAUCAA
#=GR Meso.viri.cl SS  ....<<<<<<<...<<<<<<.......<<<<..<<<<...

Meso.viri.cl	ACUAAAGCGGACGCGGGUUCAAAACCCGCCAGCUCCACCA
#=GR Meso.viri.cl SS	.<<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Meth.caps DE converted from Zweib's tmRNA dataset 

Meth.caps		GGGGGCGACAUGGCUUCGACGUGGAUCGCGAAACCUGAG
#=GR Meth.caps SS  >>>>>>>............>>>>>>>>......>>...>

Meth.caps	GUGCAUGCCGAGGUGCAGAUGACCUCGUAAAUCCAUCUGC
#=GR Meth.caps SS  >>>>>>>>AAAAA.>>>>>>>.aaaaa......<<<<<<<

Meth.caps	AAACCAAAUAAACGCCAACGACGACGUUUACGCACUGGCC
#=GR Meth.caps SS  ................................>>..>>>>

Meth.caps	GCUUAAGCCGGCCGGCCUCUGAUCAGCAGCUCGCUUACAA
#=GR Meth.caps SS  >...........<<<<<..<<......>>>..>>>>....

Meth.caps	GCGGCUGGUUGGGGGUAACCCAAUUGUAAGCUCGCGCUGA
#=GR Meth.caps SS  >>....B.......<<.....<<..<<..<<<b>>>>>..

Meth.caps	AGUCUGUCCGGGGCCGAAGCGCUAAAACCCAACGGAAUCG
#=GR Meth.caps SS  .>>>..CCCC.<<<...<<<<<..........cccc...>

Meth.caps	CCGUCCGUCUUCCCUGCCACUCGGGUAGCGUCCGGCUAAA
#=GR Meth.caps SS  >>>..>>>....>>>.DDDDDD<<<..<<<..<<<<....

Meth.caps	UCAAUAGAGUGGAUACGCAUGUAGAACCGAUGGCAGAGGA
#=GR Meth.caps SS  ......dddddd....<<<<<<...<<<...<<.....<<

Meth.caps	UUUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
#=GR Meth.caps SS	<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Micr.degr DE converted from Zweib's tmRNA dataset 

Micr.degr		GGGGGCGAUUAGGAUUCGACGCCGGUAACAAAACCCGAA
#=GR Micr.degr SS  >>>>>>>............>>.>>>>>.......>>>.>

Micr.degr	GUGCAUGUCGUGAGGGUAGCCAAUCACGUAAAUCCAAAGC
#=GR Micr.degr SS  >>>>>>>>>>>>>..AAAAA...<<<<<..........aa

Micr.degr	UGCAAAUUAUCAGUUGCCAAUGAUGACAACUACGGUGCUC
#=GR Micr.degr SS  aaa....................................>

Micr.degr	AACUAGCUGCGUAAGUAGCUUUUUGUUACACCAUCUAGCG
#=GR Micr.degr SS  >>..>>>>>......<<<<<..<<<...............

Micr.degr	GUACGCCGCUAGCGGUUUUUAACAAGGUGCCAGUACCGCG
#=GR Micr.degr SS  ............>>>>>...>>>..>>..BBBBB.<<..<

Micr.degr	UUAACGACUGUCACUUAGAACUGGAUCGCAGUGAAGCCUG
#=GR Micr.degr SS  <<...<<<<<.........bbbbb...>>.>....>>>>.

Micr.degr	CCUGGGGUGGAUCAGCUAAACUUUUACAGGAUCGCGCUUU
#=GR Micr.degr SS  CCCC<<<<....<.<<..........cccc...>>>>>>>

Micr.degr	UCGUCCCGCCCGCUGGGCUGUAAAGCGUUAAAUCAAUAAG
#=GR Micr.degr SS  .>>.>>>D.DDDDD<<<.<<.<<<<<<<..........dd

Micr.degr	CGGUUCUAAGCAUGUAGAGCUGACGGCGGAGUACUGACGG
#=GR Micr.degr SS  ddd.d....<<<<<<...<<<..<<<.....<<<<<.<<.

Micr.degr	ACGGGGGUUCAAAUCCCCCCGCCUCCACCA
#=GR Micr.degr SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Myco.aviu DE converted from Zweib's tmRNA dataset 

Myco.aviu		GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGG
#=GR Myco.aviu SS  >>>>>>>...........>>.>>.>>>.....>>>>>.>

Myco.aviu	AAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGU
#=GR Myco.aviu SS  ...>>>>>>>>>>...AAAA..A..<<<<<......a..a

Myco.aviu	UGCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACG
#=GR Myco.aviu SS  aaa....................................>

Myco.aviu	CUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGA
#=GR Myco.aviu SS  >>.>>>.>>......<<.<<<..<<<.>>>>>>.>>>>>.

Myco.aviu	ACGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCC
#=GR Myco.aviu SS  .>.BBBBB<.<<<<<...<<<<<<.......bbbbb....

Myco.aviu	ACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACA
#=GR Myco.aviu SS  .>>>>.>>>>>>.CCCCC.<<<<<<.<<<<..........

Myco.aviu	GCGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGG
#=GR Myco.aviu SS  ccccc..>>>>>.>>...>>>....DDDDDD.<<<...<<

Myco.aviu	AGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGC
#=GR Myco.aviu SS  .<<<<<.............dddddd...<<<<<......<

Myco.aviu	CUUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCA
#=GR Myco.aviu SS  <<<<<.....<<<<<.<<...>>>>>.......<<<<<<<

Myco.aviu	GCUCCACCA
#=GR Myco.aviu SS	<<<<<....

//
# STOCKHOLM 1.0

#=GS Myco.capr DE converted from Zweib's tmRNA dataset 

Myco.capr		GGGGAUGUCAUGGAUUUGACAGGAUAUCUUUAGUACAUA
#=GR Myco.capr SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Myco.capr	UAAGCAGUAGUGUUGUAGACUAUAAAUACUACUAGGUUUA
#=GR Myco.capr SS  >..>>>>>AAAAA..>>>>>>....aaaaa....<<<<<<

Myco.capr	AAAAACGCAAAUAAAAACGAAGAAACUUUUGAAAUGCCAG
#=GR Myco.capr SS  ........................................

Myco.capr	CAUUUAUGAUGAAUAAUGCAUCAGCUGGAGCAAACUUUAU
#=GR Myco.capr SS  .....................................>>.

Myco.capr	GUUUGCUUAAUAACUACUAGUUUAGUUAUAGUAUUUCACG
#=GR Myco.capr SS  >.>>>............<<<.<<<>>>>>>>......>.>

Myco.capr	AAUUAUAGAUAUUUUAAGCUUUAUUUAUAACCGUAUUACC
#=GR Myco.capr SS  >>...........BBBBBB<<<.<<<<<<<<.........

Myco.capr	CAAGCUUAAUAGAAUAUAUGAUUGCAAUAAAUAUAUUUGA
#=GR Myco.capr SS  ...bbbbbb..>>>>>>>>.>CCCCCC<..<<<<<<<<..

Myco.capr	AAUCUAAUUGCAAAUGAUAUUUAACCUUUAGUUAAUUUUA
#=GR Myco.capr SS  .......cccccc...>>>>>>>>>..>.>DDDDDDD<.<

Myco.capr	GUUAAAUAUUUUAAUUAGAAAAUUAACUAAACUGUAGAAA
#=GR Myco.capr SS  <<<<<<<<<...........ddddddd...<<<<<.....

Myco.capr	GUAUGUAUUAAUAUAUCUUGGACGCGAGUUCGAUUCUCGC
#=GR Myco.capr SS  <<<<<<<<....<<<<<<<<...>>>>>.......<<<<<

Myco.capr	CAUCUCCACCA
#=GR Myco.capr SS	<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Myco.geni DE converted from Zweib's tmRNA dataset 

Myco.geni		GGGGAUGUUUUGGGUUUGACAUAAUGCUGAUAGACAAAC
#=GR Myco.geni SS  >>>>>>>............>>>>>.>.......>>>>>>

Myco.geni	AGUAGCAUUGGGGUAUGCCCCCUUACAGCGCUAGGUUCAA
#=GR Myco.geni SS  >>>.>>>>>>>>>A..AAA.<<<<.........aaa..a.

Myco.geni	UAACCGACAAAGAAAAUAACGAAGUGUUGGUAGAACCAAA
#=GR Myco.geni SS  ........................................

Myco.geni	UUUGAUCAUUAACCAACAAGCAAGUGUUAACUUUGCUUUU
#=GR Myco.geni SS  ..................................>>.>>>

Myco.geni	GCAUAAGUAGAUACUAAAGCUACAGCUGGUGAAUAGUCAU
#=GR Myco.geni SS  >.............<<<<<<.>>>>>>>>>>>>>.BBBBB

Myco.geni	AGUUUGCUAGCUGUCAUAGUUUAUGACUCGAGGUUAAAUC
#=GR Myco.geni SS  B<<<<<<<<<<<<<.......bbbbbb..>>>>>>>>>..

Myco.geni	GUUCAAUUUAACCUUUAAAAAUAGAACUUGUUGUUUCCAU
#=GR Myco.geni SS  CCCC.C<<<<<<<<<......c.cccc...>>>>>>>>>.

Myco.geni	GAUUGUUUUGUGAUCAAUUGGAAACAACAAGACAAAAAUC
#=GR Myco.geni SS  >>>.DDDD.DDD<<<...<<<<<<<<<.............

Myco.geni	CACAAAACUAAAAUGUAGAAGCUGUUUGUUGUGUCCUUUA
#=GR Myco.geni SS  ddd.dddd...<<<<<....<<<<<<<<<......<.<<<

Myco.geni	UGGAAACGGGUUCGAUUCCCGUCAUCUCCACCA
#=GR Myco.geni SS	<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Myco.pneu DE converted from Zweib's tmRNA dataset 

Myco.pneu		GGGGAUGUAGAGGUUUUGACAUAAUGUUGAAAGGAAAAC
#=GR Myco.pneu SS  >>>>>>>............>>>>>.>........>>>>>

Myco.pneu	AGUUGCAGUGGGGUAUGCCCCUUACAGCUCUAGGUAUAAU
#=GR Myco.pneu SS  >>>>>>>>>AAAA>>>>>>aaaa.........<<<<<<..

Myco.pneu	AACCGACAAAAAUAACGACGAAGUUUUGGUAGAUCCAAUG
#=GR Myco.pneu SS  ........................................

Myco.pneu	UUGAUCGCUAACCAACAAGCAAGUAUCAACUACGCUUUCG
#=GR Myco.pneu SS  .................................>>.>>.>

Myco.pneu	CUUAGAACAUACUAAAGCUACACGAAUUGAAUCGCCAUAG
#=GR Myco.pneu SS  ............<.<<<<.>>>>>>>>>>>>>.BBBBBB<

Myco.pneu	UUUGGUUCGUGUCACAGUUUAUGGCUCGGGGUUAACUGGU
#=GR Myco.pneu SS  <<<<<<<<<<<<.......bbbbbb..>>>>>>>>..>CC

Myco.pneu	UCAACUUAAUCCUUAAAUUAUGAACUUAUCGUUUACUUGU
#=GR Myco.pneu SS  CCC.<<<<<<<<<.......ccccc...>>>>>>>>>>>.

Myco.pneu	UUGUCUUAUGAUCUAAAGUAAGCGAGACAUUAAAACAUAA
#=GR Myco.pneu SS  >.DDDD.DDD<.<..<<<<<<<<<<..........ddd.d

Myco.pneu	GACUAAACUGUAGAAGCUGUUUUACCAAUCCUUUAUGGAA
#=GR Myco.pneu SS  ddd...<<<<<...<<<<<<<<<.......<.<<<<<...

Myco.pneu	ACGGGUUCGAUUCCCGUCAUCUCCACCA
#=GR Myco.pneu SS	>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Myco.pulm DE converted from Zweib's tmRNA dataset 

Myco.pulm		GGGGAUGUAAUGGUUUCGACAGGCAUUUAUAACCUUAUA
#=GR Myco.pulm SS  >>>>>>>............>>.>>>>>......>>>>>>

Myco.pulm	AUGCAGUAGUUUGGCAGACUAUAAUGCUACUAGGCGUUUC
#=GR Myco.pulm SS  >.>>>>>>>>>>AAA<<<<<...............aaa..

Myco.pulm	AAUAAACGGAACAAAAAAACAAGAAAAUGACUAUCAAGAU
#=GR Myco.pulm SS  ...........................>.....>..>>>.

Myco.pulm	UUAAUGAUUAGUCAAAAUCUAAACCAAAAUCUAGCUUUUG
#=GR Myco.pulm SS  .................<<<..<.....<.>>>>..>...

Myco.pulm	CUAGCGUUUAGCAGCUAGUUGCUCCAUUAUAUGUUCUGGA
#=GR Myco.pulm SS  .>>>.>>.>.BBB..B.<..<<....<<<...<..<<<<.

Myco.pulm	UAAUGGAAGCAUGCCUAAGAACUUAGUGAAGUUGCUCUAG
#=GR Myco.pulm SS  ........b..bbb........>>.>>>>>>>>>..CCCC

Myco.pulm	CGUCAAUUUCAUGAAAUUUAGCUAGUUGAUUUAAUAGAAU
#=GR Myco.pulm SS  C..<<<<<<<<<.<<.....ccccc...>>>>>>>>>>..

Myco.pulm	UUUGUUCAAUUUUUUCUAUUAAAUCAACAAUUAAAAAUUG
#=GR Myco.pulm SS  ....DDDDDD....<<<<<<<<<<............dddd

Myco.pulm	GAAUAAACUGUAGAUUUAUAAGCAUUGUGAAUGUGUGGAC
#=GR Myco.pulm SS  dd....<<<<<....<<<<<<<.......<<<<<.<<...

Myco.pulm	CCGGGUUCGACUCCCGGCAUUUCCACCA
#=GR Myco.pulm SS	>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Neis.gono DE converted from Zweib's tmRNA dataset 

Neis.gono		GGGGGCGACCUUGGUUUCGACGGGGGUUGCGAAGCAGAU
#=GR Neis.gono SS  >>>>>>>.............>>>>>>>>.....>>>>>.

Neis.gono	GCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAA
#=GR Neis.gono SS  >>>.>>>>>>>>>>>..AAAA.A<<<<<......aaaaa.

Neis.gono	UUCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGC
#=GR Neis.gono SS  .............................>..>>>>>>..

Neis.gono	UUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGU
#=GR Neis.gono SS  ....<<<<<<<>>>>>>.>>>>>>..BBBBBB<<<<<<.>

Neis.gono	GGCGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUU
#=GR Neis.gono SS  >>>....<<<<..<<<<<<........bbbbbb...>>>>

Neis.gono	CCAGCCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAAC
#=GR Neis.gono SS  >>.>>>>.CCCCCC<<<<.<<<<<<.........cccccc

Neis.gono	UGGUUUCCAAAAGGCCUGUUGGUCGGCAUGAUGGAAAUAA
#=GR Neis.gono SS  ..>>>>>>>..>.>>>.DDDDDDD<<<.<..<<<<<<<..

Neis.gono	GAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUG
#=GR Neis.gono SS  ............ddd.dddd...<<<<<<....<<<<<<<

Neis.gono	UAGAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCC
#=GR Neis.gono SS  <....<<<<<<<<...>>>>>.......<<<<<<<<<<<<

Neis.gono	ACCA
#=GR Neis.gono SS	....

//
# STOCKHOLM 1.0

#=GS Nitr.euro DE converted from Zweib's tmRNA dataset 

Nitr.euro		GGGGGCGAUCCGGUUUCGACGUGGGUUGCAAAGCAGCGC
#=GR Nitr.euro SS  >>>>>>>............>>>>>>>>.....>>>>.>>

Nitr.euro	AGGGCAUACCGAGGUUCAGUACCCUCGUAAAACAGCUGAA
#=GR Nitr.euro SS  >>.>>>>>>>>>>>.AAAAA..<<<<<.......aaaaa.

Nitr.euro	AAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCCGC
#=GR Nitr.euro SS  ...............................>>>>>>>>.

Nitr.euro	UUAAUCCGGCUAAACUCCACACCGGUGGGCCUCAACGCCG
#=GR Nitr.euro SS  ......<<<<<<<<>>>>>>.>>>>>>..BBBB..<<<<<

Nitr.euro	GGUCUGGCAACAGACAGUGGAGUCAUUAACGAGGAUCGCG
#=GR Nitr.euro SS  <.>>>>....<<<<..<<<<<<........bbbb...>>>

Nitr.euro	UUUUGCAGGGUUACUUUGCAGAGCGCUAAAAAAUAGGUAA
#=GR Nitr.euro SS  >>>>>>>..CCCCCCC<<<<<<<<<<........cccccc

Nitr.euro	CUCGCCUGUCAUCAGCCUGCCGGUUGGCGGAUGCCAGGUC
#=GR Nitr.euro SS  c..>>>>>>..>>.>>>.DDDDDDD<<<<<..<.<<<<<.

Nitr.euro	AAAUUAAAUAACAUGGCUAAGUAUGUAGAACUGUCUGUAG
#=GR Nitr.euro SS  .........ddd.dddd...<<<<<<....<<<<<<<<..

Nitr.euro	AGGACUUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACC
#=GR Nitr.euro SS  ..<<<<<<<<...>>>>>.......<<<<<<<<<<<<...

Nitr.euro	A
#=GR Nitr.euro SS	.

//
# STOCKHOLM 1.0

#=GS Odon.sine.cl DE converted from Zweib's tmRNA dataset 

Odon.sine.cl		GGGGCUGACUUGGUUUCGACAUUUAAAAAUUGUUACAGU
#=GR Odon.sine.cl SS  >>>>>>>............>>>>>>>>....>>>>.>>>

Odon.sine.cl	AUGAUGCAGGUCGAAGUUUCUAAUCUUCGUAAAAAAAGAG
#=GR Odon.sine.cl SS  >>...>>>>>>>>>>>AAAAA...<<<<<.......aaaa

Odon.sine.cl	AAAUUUAUAAUAAAUGCUAAUAAUUUAAUUUCUUCUGUGU
#=GR Odon.sine.cl SS  a.......................................

Odon.sine.cl	UUAAAAGUUUAUCAACUAAGCAAAAUAGUUUAAAUUUAAG
#=GR Odon.sine.cl SS  ........................................

Odon.sine.cl	UUUUGCUGUUUAAGUUUUAUGCACAUUUAAUGAUCUAGUA
#=GR Odon.sine.cl SS  .>>>>>>>...........................<<<<<

Odon.sine.cl	AAUAACUUUGUUCGCUAUAAUUUAUAUUUAUAACUAGACU
#=GR Odon.sine.cl SS  <<...........>>>>>>>.>>>>>BB<<<<<..>>>>.

Odon.sine.cl	UUUGUCUUUUUUAUAGUUUAGAAUAACUUUAUCAUUUCAA
#=GR Odon.sine.cl SS  ...<<<<...<<<<<<<...bb..................

Odon.sine.cl	ACCUCGUUCCAUCUAGUUGAACUAAACCUGUGAACGAAUA
#=GR Odon.sine.cl SS  .....>>>>.>>...<<.<<<<...<<<<<<......<<<

Odon.sine.cl	CUAUAAUAAAAUUUUUAGAUGGACGUGGGUUCGACUCCCA
#=GR Odon.sine.cl SS  <<.<<<<......<<<<<<<<...>>>>>.......<<<<

Odon.sine.cl	UCAGCUCCACCA
#=GR Odon.sine.cl SS	<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Oeno.oeni DE converted from Zweib's tmRNA dataset 

Oeno.oeni		GGGGUAGUUCCGGAAUUCGACAGGUUAUUACAAGCAUGG
#=GR Oeno.oeni SS  >>>>>>>.............>>>>>>>>.....>>>>>>

Oeno.oeni	AUUGCGUUCCCGUUUGUCGGGUUAAAGACUGCAGAUAUAA
#=GR Oeno.oeni SS  >>.>>>>>>>>>.....<<<<...................

Oeno.oeni	CUGCAAAAAAUAAUGAACCAUCUUACGCAUUAGCUGCCUA
#=GR Oeno.oeni SS  .......................>>>>>....>>>>....

Oeno.oeni	AUCGCAGUAGCGUAGCCCUUUGUUGAGUCCACGGCAACAU
#=GR Oeno.oeni SS  ....<<<<.<<<<<>>>..>>>>>..AAAAAA<<<<<...

Oeno.oeni	UCUCGGCCUAAUUAGUGGAUUAGCUGCUGGCAUUUAUGUU
#=GR Oeno.oeni SS  ....<<<.......aaaaaa....>>>>>...>>>>>BBB

Oeno.oeni	CGGAAUAAAAGCAGUGAAACAAGAAUCGAACUAGCUCUCG
#=GR Oeno.oeni SS  BBB.<<<<<..<<<<<.........bbbbbb..>>>>..>

Oeno.oeni	AUUUGGAAGUUAGCAACCUAAUCUUGAGCGAAAUUACUUG
#=GR Oeno.oeni SS  >>..>>..CCCCCCC.<<..<<<..<<<<.........cc

Oeno.oeni	UUAACUAUGAGCGUAGAUAUUUAUGUGAUUGGAUAAUUUG
#=GR Oeno.oeni SS  ccccc....<<<<<....<<<<<<<<......<<<<<<<<

Oeno.oeni	GACAUGGGUUCGACUCCCAUCUACUCCACCA
#=GR Oeno.oeni SS	....................<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Pavl.luth.cl.pa DE converted from Zweib's tmRNA dataset 

Pavl.luth.cl.pa		GGGGCUGUUUAGGUUUCGAUCCUAAAAAAAACUAAUAAG
#=GR Pavl.luth.cl.pa SS  .......................................

Pavl.luth.cl.pa	UGUGAUGCAAGUAGAGGAAACCCUCUUAAAAAAAAAGCAA
#=GR Pavl.luth.cl.pa SS  ............>>>>>....<<<<<..............

Pavl.luth.cl.pa	ACAAUAAAUGCAAACAAUAUUUUAUCUUUUAAUCGAGUAG
#=GR Pavl.luth.cl.pa SS  ........................................

Pavl.luth.cl.pa	CUGUAGCCCCGUAUAGUUAUAUAGCAUUAACUCCUUAUGG
#=GR Pavl.luth.cl.pa SS  ....................................>>>>

Pavl.luth.cl.pa	UCAAAAAAUCUAGAAAGUUUGAUCGUAAAGCAAACCUUAG
#=GR Pavl.luth.cl.pa SS  >>...>>>>.......<<<<<<<<<<..............

Pavl.luth.cl.pa	CUAGAAGCACACAAGAAUAA
#=GR Pavl.luth.cl.pa SS	......>..>....<..<..

//
# STOCKHOLM 1.0

#=GS Pedi.pent DE converted from Zweib's tmRNA dataset 

Pedi.pent		GGGGUCGUUAUGGAUUCGACAGGUAUGGGUCGAGCCAUG
#=GR Pedi.pent SS  >>>>>>>..........................>>>>>>

Pedi.pent	ACUGCAUUUCGUAGGUUACGGCUACGUAAAAACGUUCAGU
#=GR Pedi.pent SS  >>.>>>>>>>>>>>...AAA.<<<<<......aaa.....

Pedi.pent	UUAUUAUAACUGCAAAAAAUAAUAACAAUUCUUACGCUUU
#=GR Pedi.pent SS  .................................>>>.>..

Pedi.pent	AGCUGCCUAAUAGUAGCUUGACGUAGAUCCGCCUAGUCUC
#=GR Pedi.pent SS  .>>>>........<<<<..<.<<<.>>>>>>.>>>>>>..

Pedi.pent	GUCCAUGGGCUAGAUACGGGUCCUAAAUGAAGUGGACUUG
#=GR Pedi.pent SS  BBBBBB.<<<<<<...<<<<<<.........bbbbbb...

Pedi.pent	CGCUUAAGUACUGGCCUGGGUGCUUAAGAAGAGGAUUUAC
#=GR Pedi.pent SS  ..>>>>.>>>>>.C.CCC<<<<<.<<<<...........c

Pedi.pent	AGACUAGCGUUUUAAUGAAGCCCCGACAUACGGCGUCUUA
#=GR Pedi.pent SS  cc.c...>>...>>>.>..>>>....DDDDD<<<.<.<<<

Pedi.pent	UUUCGCGAAAUUUAAGUAGUAUGAAUAUGAAUGUAGAUGU
#=GR Pedi.pent SS  ...<<.............ddddd.....<<<<<<....<<

Pedi.pent	CAUGGUGGCGACAUGCUUGGACGCGGGUUCGACUCCCGCC
#=GR Pedi.pent SS  <<<<<<................>>>>>.......<<<<<<

Pedi.pent	GACUCCACCA
#=GR Pedi.pent SS	<<<<<<....

//
# STOCKHOLM 1.0

#=GS Porp.ging DE converted from Zweib's tmRNA dataset 

Porp.ging		GGGGCUGACCGGCUUUGACAGCGUGAUGAAGCGGUAUGU
#=GR Porp.ging SS  >>>>>>>...........>>>>>>>......>>>>>>>>

Porp.ging	AAGCAUGUAGUGCGUGGGUGGCUUGCACUAUAAUCUCAGA
#=GR Porp.ging SS  ..>>>>>>AAAAA...>>>>.>>.aaaaa........<<.

Porp.ging	CAUCAAAAGUUUAAUUGGCGAAAAUAACUACGCUCUCGCU
#=GR Porp.ging SS  <<<<...........................>.>>>.>>>

Porp.ging	GCGUAAUCGAAGAAUAGUAGAUUAGACGCUUCAUCGCCGC
#=GR Porp.ging SS  >.............<<<<<<<.<.................

Porp.ging	CAAAGUGGCAGCGACGAGACAUCGCCCGAGCAGCUUUUUC
#=GR Porp.ging SS  ...................>>.>>>>>>>>>.>>>...BB

Porp.ging	CCGAAGUAGCUCGAUGGUGCGGUGCUGACAAAUCGGGAAC
#=GR Porp.ging SS  BBBB<<<.<<<<<.......<<<<.<<.....bbbbbb..

Porp.ging	CGCUACAGGAUGCUUCCUGCCUGUGGUCAGAUCGAACGGA
#=GR Porp.ging SS  .>>>>>>>>...CCCCCC.<<<<<<<<........c.ccc

Porp.ging	AGAUAAGGAUCGUGCAUUGGGUCGUUUCAGCCUCCGCUCG
#=GR Porp.ging SS  cc.....>>.>>.>>...>>>...DDDDDD.<<<.<<.<<

Porp.ging	CUCACGAAAAUUCCAACUGAAACUAAACAUGUAGAAAGCA
#=GR Porp.ging SS  .<<.............dddddd....<<<<<<.....<<<

Porp.ging	UAUUGAUUCCAUGUUUGGACGAGGGUUCAAUUCCCUCCAG
#=GR Porp.ging SS  <<<<<....<<<<<.<<...>>>>>.......<<<<<<<<

Porp.ging	CUCCACCA
#=GR Porp.ging SS	<<<<....

//
# STOCKHOLM 1.0

#=GS Porp.purp.cl DE converted from Zweib's tmRNA dataset 

Porp.purp.cl		GGGGCUGCAAGGUUUCUACAUUGUGAAAAAACAAAUAUA
#=GR Porp.purp.cl SS  >>>>>>>...........>>>>>>>>.....>>>>.>.>

Porp.purp.cl	UGAAAGUAAAACGAGCUCAUUAUUAGAGCUUUUAGUUAAA
#=GR Porp.purp.cl SS  >>....>.>>>.AAAA...>>>>>...aaaa.......<<

Porp.purp.cl	UAAAUGCAGAAAAUAAUAUUAUUGCUUUUUCUCGAAAAUU
#=GR Porp.purp.cl SS  <<<..................................>..

Porp.purp.cl	AGCUGUUGCAUAAAUAGUCUCAAUUUUUGUAAUUCGAAGU
#=GR Porp.purp.cl SS  >>>>>>>>...............................<

Porp.purp.cl	GAUAGACUCUUAUACACUACGAAUAUUCUGUUAGAGUUGC
#=GR Porp.purp.cl SS  <<<<<.<<..<............>>>>..>.>>>..<<<.

Porp.purp.cl	UCUUAAUAAAAGAAAAGUAAAAAAAUACAAAUUCUUAUGU
#=GR Porp.purp.cl SS  <...<<<<..............................>.

Porp.purp.cl	UUUUUACCUGAAUUGAUUCAAUUUAAGGUUAGUAUUUUUU
#=GR Porp.purp.cl SS  >>>>>....<<<..<<.<...<<<.<......<<<<.<<<

Porp.purp.cl	GAUUUUUACAAUGGACGUGGGUUCAAGUCCCACCAGCUCC
#=GR Porp.purp.cl SS  <....<<<<<<<<...>>>>>.......<<<<<<<<<<<<

Porp.purp.cl	ACCA
#=GR Porp.purp.cl SS	....

//
# STOCKHOLM 1.0

#=GS Prev.inte DE converted from Zweib's tmRNA dataset 

Prev.inte		GGGCUUGUAUGGAUUUGACGGCAAGACGAAAUGGUAUGU
#=GR Prev.inte SS  >>>>>>>...........>>>>>>>.....>>.>>>>>>

Prev.inte	AAGCAUGCGGAGCAUUGGUAGCUGGCUCCUAAAUAUCGGU
#=GR Prev.inte SS  ..>>>>>>AAAAA...>>>>>>>.aaaaa........<<<

Prev.inte	UAUCAAACAAUUAAUUGGCGAAAACAAUUACGCUCUCGCU
#=GR Prev.inte SS  <<<<...........................>.>>>.>>>

Prev.inte	GCCUAAUCGAAGUACAGUAGAUUACUGGCUUUAUUCGACU
#=GR Prev.inte SS  >.............<<<<<<<.<.................

Prev.inte	AUUAGAUAGUUGAACGAGACACUGCUCCAAAGAUGUUGUU
#=GR Prev.inte SS  ...................>..>>>>>>...>>>....BB

Prev.inte	CCGAAUCGGAGGGUAAAGCGGUGCAGGUUAAAUCGGAAAU
#=GR Prev.inte SS  BBBB<<<...<<.......<<<<..<......bbbbbb..

Prev.inte	AGUUUGGGUAUGCCUCGCUGCCCAAAUGAAAUUUAGAGGA
#=GR Prev.inte SS  .>>>>>>>>>>.CCCC<.<<<<<<<<<........cccc.

Prev.inte	UAAGGCAUUGGUUGGUGGUUCAGGUCUUGCCAAUGCUCGA
#=GR Prev.inte SS  ...>>>>>>>>>....>>DDDDD.D<<.<<<<<<<<<...

Prev.inte	AAACCAAAGGCUGAAAUAAGCAUGUAGAAAGCGUAUGGUU
#=GR Prev.inte SS  ........d.ddddd....<<<<<<.....<<<<<<.<<.

Prev.inte	UCCUUGUGCGGACCGGAGUUCGACUCUCCGCAGGUCCACC
#=GR Prev.inte SS  ..<<<<<.<<...>>>>>.......<<<<<<<<<<<<...

Prev.inte	A
#=GR Prev.inte SS	.

//
# STOCKHOLM 1.0

#=GS Proc.mari.-1 DE converted from Zweib's tmRNA dataset 

Proc.mari.-1		GGGGUUGUAAUGGUUUCGACGGGGCGUAAGGAAGAUGAC
#=GR Proc.mari.-1 SS  >>>>>>>............>>>>>>>>.....>>>>.>>

Proc.mari.-1	UGAAGCCUGCUCGGUUAGAGCAAAAACACAAACGCUAACA
#=GR Proc.mari.-1 SS  >..AAAA>>>>>aaaa.<<<<<..................

Proc.mari.-1	AAAUCGUUAGUUUCUCCCGUCAAACAGCACCAGUUGCUGC
#=GR Proc.mari.-1 SS  ................................>>>.>>>.

Proc.mari.-1	UUGAUCUCAAAGGAGAUGGGGUGAUAUCAGCCUUAUCAAC
#=GR Proc.mari.-1 SS  ................<<<<<<....>>>>.>>..>>...

Proc.mari.-1	CAAAUGAUCCAAGGAGCCUGGAAGGGCUCCACCAUUACUA
#=GR Proc.mari.-1 SS  .....B.BB...<<<<.<<<<...bb.b............

Proc.mari.-1	GGUGAUCUCAACCGAUGUUUCGGACAGCGGUUCGAUUCCG
#=GR Proc.mari.-1 SS  <<<.<<<<......<<<<<<<<...>>>>>.......<<<

Proc.mari.-1	CUCAACUCCACCA
#=GR Proc.mari.-1 SS	<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Proc.mari.-2 DE converted from Zweib's tmRNA dataset 

Proc.mari.-2		GGGGCUGCAAUGGUUUCGACGGGGUAUGAGGAGGGUGAC
#=GR Proc.mari.-2 SS  >>>>>>>............>>>>>>>>...>.>>>>.>>

Proc.mari.-2	UGAAGCCUGCUCGGUAAGAGCAAAUCCGUAACUGCGAACA
#=GR Proc.mari.-2 SS  >...AAA>>>>>aaa..<<<<<..................

Proc.mari.-2	ACAUCGUUCGUUUCUCCCGUCAGCCUGCCCUCGUGGCUGC
#=GR Proc.mari.-2 SS  ............................>>>>>>..>>>.

Proc.mari.-2	CUGACCCUAAUAAGGGAGAUGGGGUGAGGUCAGCCUUAUC
#=GR Proc.mari.-2 SS  ...................<<<.<<<<<<.>>>>>>..>>

Proc.mari.-2	ACCCAAAUGACCCAUGGGGGCUGCGAGGCCCCUUUAACUA
#=GR Proc.mari.-2 SS  >.......B.BB..<<<<<<<<<...bb.b..........

Proc.mari.-2	CUAGGUGAUCCACACCAGUGUCUCGGACAGCGGUUCGAUU
#=GR Proc.mari.-2 SS  ...<<<.<<<<.<....<<<<<<<<...>>>>>.......

Proc.mari.-2	CCGCUCAGCUCCACCA
#=GR Proc.mari.-2 SS	<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Pseu.puti DE converted from Zweib's tmRNA dataset 

Pseu.puti		GGGGCCGAUUAGGAUUCGACGCCGGUAGCGAAACUCUAG
#=GR Pseu.puti SS  >>>>>>>............>>>>>>>>.......>...>

Pseu.puti	GUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGU
#=GR Pseu.puti SS  >>>>>>>>AAAAA..>>>>>>>.aaaaa........<<<<

Pseu.puti	UGCAACUUUUAUAGUUGCCAAUGACGAAAACUACGGCGCG
#=GR Pseu.puti SS  <<<.....................................

Pseu.puti	GAGUACAAGCUGGCUGCGUAAGCAGUCCUCUUGACCCGUU
#=GR Pseu.puti SS  ......>>>>>.>>>>........................

Pseu.puti	GCUUCUGGUAGCUUCGGCUCCAGCAAUCACUAGGGGAUGC
#=GR Pseu.puti SS  .....<<<<<<<<<.........>>>>>>.>..>>>.>.B

Pseu.puti	CUGUAAACCCGAACUGAUUGUCAUACAGAACAGGAUCGUC
#=GR Pseu.puti SS  BBBB.<.<<<..<.<<<<<<.........bbbbb...>>>

Pseu.puti	GCGUAGCACGUUGUGGGCGAAGUGACUAAAACUUACACAA
#=GR Pseu.puti SS  >>.>.>>.>CCCCCC<<<.<.<<<<<.........ccccc

Pseu.puti	CUCAUCCAAAGCACCCUGCCCGUCGGGCGGCUGCGGAUUA
#=GR Pseu.puti SS  c..>..>...>..>>>.DDD.DDD<<<....<...<.<..

Pseu.puti	AAUCAGUAGACACGGCUAAGCAUGUAGUACCGACAGCGGA
#=GR Pseu.puti SS  ........ddd..ddd...<<<<<<...<<<....<....

Pseu.puti	GUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
#=GR Pseu.puti SS	.<<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Recl.amer.mt DE converted from Zweib's tmRNA dataset 

Recl.amer.mt		GGGGAUGUUUUUAGUAUUCGACAUAGUGGAAUUUAUUUG
#=GR Recl.amer.mt SS  >>>>>>>..............>>>>>>.>..>>>>>...

Recl.amer.mt	UGGAAUUUUUAAAUUUUAUUUUUUUAUCUACUUUUAAGAA
#=GR Recl.amer.mt SS  .>>>>...>>>>>>...A..>>>>>.>....a.....<<<

Recl.amer.mt	GGAUUUUUUAAAAACACCUUGUUAAAUAAGUAAAUAAAAA
#=GR Recl.amer.mt SS  <<<.....................................

Recl.amer.mt	AAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGG
#=GR Recl.amer.mt SS  .......<<<<<<....<<<<...<<<<<..<.<<<<<<.

Recl.amer.mt	AACCGAGGGCGGAUCUCGGCAUCUCCACCA
#=GR Recl.amer.mt SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Rhod.spha DE converted from Zweib's tmRNA dataset 

Rhod.spha		GGGGCCGAAACAGGAUCGACGAACGUCUAAAGGGGUUGG
#=GR Rhod.spha SS  >>>>>>>............>>>.>>>.....>>.>...>

Rhod.spha	CUUUGUCCCGGUGAGGUACCACCGUUAUCGGUCCGAAAAG
#=GR Rhod.spha SS  >..>>>>>.AAAA.>>.>>>..aaaa...<<<<<......

Rhod.spha	UACAGUUGCCAACGACAACCGUGCUCCGGUGGCUCUGGCU
#=GR Rhod.spha SS  ............................>>>>>>>.>>>>

Rhod.spha	GCGUAAGCAGUUCGAGUUAUCGAAACUUAAGCCCUUGCGC
#=GR Rhod.spha SS  >......<<<<<.<<<<<<<......BBBB....>>>>>>

Rhod.spha	UUAGCCGCGUAAGGCGGGGUUCGCAGGUACCUGGCAACAG
#=GR Rhod.spha SS  bbbb..<<<<<<.>>.>>>>..CCCCCC<<<<.<<.....

Rhod.spha	AAACCUGCACUUGUCCGGGGCAACCCGGACUAUGGACAUA
#=GR Rhod.spha SS  ..cccccc...D>>>>>>>d...<<<<<<<...<<<<<..

Rhod.spha	AACGCGCUCGUCAUAAGCGGAUCGGACCCGGGGGCGGUAC
#=GR Rhod.spha SS  ...<<...<.<<....<<<..<<<...>>>>>.......<

Rhod.spha	CCGGCGGCUCCACCA
#=GR Rhod.spha SS	<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Rick.cono DE converted from Zweib's tmRNA dataset 

Rick.cono		GGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGAUUG
#=GR Rick.cono SS  >>>>>>>............>>>>>>>.......>>>>>>

Rick.cono	CUUUUACUCGGGAUGAUUCCGCCGAUGGCUUGUGCCAUAU
#=GR Rick.cono SS  >..>>>>>AAAA..>>.>>>>.......aaaa.......<

Rick.cono	GGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCGUUCUG
#=GR Rick.cono SS  <<<<<...................................

Rick.cono	UAGGUCAUUUAGCUUUAGCAGCUUAAUCCUACGCGGCUGG
#=GR Rick.cono SS  ...............>>>.>......<.<<<>.>>>>...

Rick.cono	AGGGUGUGCCGGGCAACAGAACAACCCUCACUUGCUAAUA
#=GR Rick.cono SS  .BBB.BB<<<<.<..........bb.bbb...C>>>>c..

Rick.cono	UAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGG
#=GR Rick.cono SS  <<<<...<<<<<.....<<<<<<<.......<<<<.<<<.

Rick.cono	ACUCGGGGGCAGUACCCGACGCCUCCACCA
#=GR Rick.cono SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Rumi.albu DE converted from Zweib's tmRNA dataset 

Rumi.albu		GGGGAUGUGAAGGUUUCGACGGGGGUCUUGUAUGGCGAU
#=GR Rumi.albu SS  >>>>>>>............>>>>>>>>...>>>>..>>>

Rumi.albu	AAGCGAGUGGAGGAGCCGCACUCUCUUAAAACGGCGUACG
#=GR Rumi.albu SS  ..>>>>>>>>.>>...AA..<<.<<......aa.......

Rumi.albu	UUUUAAAAUUAGGCGGCCACGGUUAUUUUGCAAAGGCAAG
#=GR Rumi.albu SS  ..................................>>>...

Rumi.albu	CUAAGGGCCACCCGUUCUUCCUGGGAAGUACCCCGGGCUG
#=GR Rumi.albu SS  ......<<<....>>>>....>>>..>>>.B..BBB<<<.

Rumi.albu	GGUUAAAGCGUUGGAUAAUUGUUGACCUUCGCCAGCCGAU
#=GR Rumi.albu SS  ..<<<.......<<<<..bbb..b..........>>..>>

Rumi.albu	GCGGUUGCCCGGUCGUUGUAUGCCAUUUUACCAAAGCGAG
#=GR Rumi.albu SS  >>>>>.....C<<<<.<<<..<<.......c.....>...

Rumi.albu	GGGGCGUGGUCUGUUUGCCCGUGCGGAGGGAAACGGCGCA
#=GR Rumi.albu SS  >>.>.>>>DDD.DDD<<<<<...<...<............

Rumi.albu	AGCCGAAAAUAACCCGACUAGACUCGUAGAAAUUCGCGUG
#=GR Rumi.albu SS  ..........ddd..ddd...<<<<<<....<<<..<<<<

Rumi.albu	AAUGGGCUUUCGGACAGGAGUUCGAUUCUCCUCAUCUCCA
#=GR Rumi.albu SS  ....<<<<<<<<...>>>>>.......<<<<<<<<<<<<.

Rumi.albu	CCA
#=GR Rumi.albu SS	...

//
# STOCKHOLM 1.0

#=GS Shew.putr DE converted from Zweib's tmRNA dataset 

Shew.putr		GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUG
#=GR Shew.putr SS  >>>>>>>.............>>>>>..>........>>>

Shew.putr	GGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCA
#=GR Shew.putr SS  >>.>>>>>>AAAAA.>>>>>>..aaaaa.....<<<<<<.

Shew.putr	AAGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCCGC
#=GR Shew.putr SS  ................................>>>>>.>.

Shew.putr	UUAAUGCCGCUAGCCAUCUACCACACGCUUUGCACAUGGG
#=GR Shew.putr SS  ......<.<<<<<>>>>>.>>>>>..>>>>.BBBB..<<<

Shew.putr	CAGUGGAUUUGAUGGUCAUCUCACAUCGUGCUAGCGAGGG
#=GR Shew.putr SS  <.<<<<..<.<<<<<............bbbb..>>>.>..

Shew.putr	AACCCUGUCUGGGGGUGAACCGCGAAACAGUACCGGACUC
#=GR Shew.putr SS  >.>>..CCCCCC<<.<...<<<<.........cccccc..

Shew.putr	ACCGUGUGGGAUCCUGUCUUUCGGAGUUCAAACGGUUAAA
#=GR Shew.putr SS  >>>>>.>>>>.>>>.DDDDDDD<<<.<<<<.<<<<<....

Shew.putr	CAAUAGAAAGACUAAGCAUGUAGCGCCUUGGAUGUAGGUU
#=GR Shew.putr SS  .....ddddddd...<<<<<<....<<.<<<......<..

Shew.putr	UUCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
#=GR Shew.putr SS	<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Sphi.arom DE converted from Zweib's tmRNA dataset 

Sphi.arom		GGGGCCGAACUAGGAUCGACGUGUGUUGAAAAGCGUUGU
#=GR Sphi.arom SS  >>>>>>>............>>>>>>>......>>>>>>>

Sphi.arom	UUUCACCCGGGCUGAGUAACCCGUUCAAGGCUCAAAACUC
#=GR Sphi.arom SS  ..>>>>>>>>>..AAAA..<<<<......aaaa.......

Sphi.arom	ACAAGUGCCAACGACAACGAAGCACUUGCUCUCGCGGCGU
#=GR Sphi.arom SS  ...........................>>>>>.>.>>...

Sphi.arom	AAUUCUAGGGGCUAACGCCCUGAAGUUACUAAGUUAGAGC
#=GR Sphi.arom SS  ..<<.<.<<<<<>>>...>BBBB.<<<<.....bbbb.>>

Sphi.arom	ACGGUUCGGACCGAACCGGGUAACAGAAUCGGAAACCGGG
#=GR Sphi.arom SS  .>>>>.....CCCC<<<<.<<.......cccc.....D.>

Sphi.arom	CCGGUUCAGGCCGGCUAUGGUGAUAAACUGCGGCGUGCAA
#=GR Sphi.arom SS  >>>>>>d.<<<<<<<...<<<<<......<<<<<<<....

Sphi.arom	UAGGCACAGCGGACCCGGGGGCGGUACCCGGCGGCUCCAC
#=GR Sphi.arom SS  ...<<<<.<<<...>>>>>.......<<<<<<<<<<<<..

Sphi.arom	CA
#=GR Sphi.arom SS	..

//
# STOCKHOLM 1.0

#=GS Spir.kunk DE converted from Zweib's tmRNA dataset 

Spir.kunk		GGGGAUGUUCCGGUUUCGACAGGAAUGAUCUACUAAUAU
#=GR Spir.kunk SS  >>>>>>>............>>.>>>>>.....>>>>>>>

Spir.kunk	UGGCAGUAGUUUAGUAGACUAUAAUGCUACUAGGUUUGAA
#=GR Spir.kunk SS  >.>>>>>AAA.A..>>>>>>...a.aaa....<<<<<<..

Spir.kunk	GAAACGCAAGCAAAAAACAAAAAGAAGACAAAAUUGAAAU
#=GR Spir.kunk SS  ........................................

Spir.kunk	GCCAGCUUUUAUGAUGAACAAUCAAUUAGCAGUAUCAAUG
#=GR Spir.kunk SS  .................................>.>.>>.

Spir.kunk	UUAGCAGCUUAAUUCCUCGCUGUUAGAGGAUCGCUAGCCG
#=GR Spir.kunk SS  >>>>..................<<<<...<<.<.<....>

Spir.kunk	UAAUAGUAGUUAAUUGUAGAUUAUUAACUAUUAUCGUAUC
#=GR Spir.kunk SS  >.>>>>>>>>>>>>..BBBBBB<<<<<<<<<<<<.<<...

Spir.kunk	UCAAGUCUUAAUCUAAUAGAAAUUCUAAUUGAUAAUGUUA
#=GR Spir.kunk SS  .........bbbbbb...>>>>>>>>>>>.CCCCCC<<<<

Spir.kunk	GAAUUUUGAAAGUCUUAUUAUCUAAUUAUUUAAUUAGUUG
#=GR Spir.kunk SS  <<<<<<<.........cccccc..>>>>>>>>>>>>>..D

Spir.kunk	UCUAAUCCUAUUAUUAAAUAAUGAAAAAAAGAUGAUUAGA
#=GR Spir.kunk SS  DDD.DDD<<<..<<<<<<<<<<...........ddd.ddd

Spir.kunk	CUAAACUGUAGAAGAUAUUAGAAUGUUAUUUGUGGACGCG
#=GR Spir.kunk SS  d...<<<<<....<<<<<<<<.....<<<<<.<<...>>>

Spir.kunk	GGUUCAAUUCCCGCCAUCUCCACCA
#=GR Spir.kunk SS	>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Stap.aure.-1 DE converted from Zweib's tmRNA dataset 

Stap.aure.-1		GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCA
#=GR Stap.aure.-1 SS  >>>>>>>.............>>>>>>>>......>>.>>

Stap.aure.-1	UUAAGCGUGUCGGAGGGUUGUCUUCGUCAUCAACACACAC
#=GR Stap.aure.-1 SS  >>..>>>>>>>>>>>.AAAAA<<<<<............aa

Stap.aure.-1	AGUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGU
#=GR Stap.aure.-1 SS  aaa...................................>>

Stap.aure.-1	AGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCC
#=GR Stap.aure.-1 SS  >>.>>........<<.<.<<<.>>>>.>>>>>>>>>.BBB

Stap.aure.-1	UAUGUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCU
#=GR Stap.aure.-1 SS  BBB<<<<<<<<.<.<<<<..........bbbbbb....>>

Stap.aure.-1	AAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUC
#=GR Stap.aure.-1 SS  >>>>>>>...CCCCCC<<<..<<<<<<...........cc

Stap.aure.-1	AAACUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUG
#=GR Stap.aure.-1 SS  cccc..>>>>>>>>..>>>.DDDDDDD<<<...<<<<<<<

Stap.aure.-1	CGAAACCUAUCGAUAAACUACACACGUAGAAAGAUGUGUA
#=GR Stap.aure.-1 SS  <..........ddddddd...<<<<<<...<<..<<.<<.

Stap.aure.-1	UCAGGACCUUUGGACGCGGGUUCAAAUCCCGCCGUCUCCA
#=GR Stap.aure.-1 SS  ....<<<<<<<<...>>>>>.......<<<<<<<<<<<<.

Stap.aure.-1	CCA
#=GR Stap.aure.-1 SS	...

//
# STOCKHOLM 1.0

#=GS Stre.coel DE converted from Zweib's tmRNA dataset 

Stre.coel		GGGGAUGAUCGGUUUCGACAGCGGCUGUCGAAGCAGGGG
#=GR Stre.coel SS  >>>>>>>...........>>>>>..>>......>>>>.>

Stre.coel	AAGCGUGUCGAGGAAGCGGCCAUGAUCUCGUAAACCACAG
#=GR Stre.coel SS  ...>>>>>>>>>>...AAAAA....<<<<<.........a

Stre.coel	GCCGAAAAAAUAAUCGCCAACACCAAGCGCGAUUCCUCCC
#=GR Stre.coel SS  aaaa....................................

Stre.coel	AGCAGGCCUUCGCCCUCGCUGCCUGAUCUCAGGUAGCGAA
#=GR Stre.coel SS  ..........>.>>.>>>>>>............<<<<<<.

Stre.coel	GCGAGCCUCCUACUAAGGGAGUGUCAGCCCGGGGCUGUUC
#=GR Stre.coel SS  <.<.<................>>>>>>.>>>>>..>BBBB

Stre.coel	CCGACCCGGAUCCUGGCAUCAGCUAGGGGACUAAACCUUG
#=GR Stre.coel SS  BB<.<<<<<...<<<<<<.......bbbbbb....>>>>.

Stre.coel	AUCCCGGUCACGGGGUGAAGAGGGAAACCAAACAGUGACU
#=GR Stre.coel SS  >>>>..CCCCCC<<<<...<<<<.........c.ccccc.

Stre.coel	GGGCCCGUCGGAGACUUGUCCGCGUGAUCUCCGGGGCCGA
#=GR Stre.coel SS  .>>>>>...>>.>....DDDDDD.<...<<...<<<<<..

Stre.coel	GAAAAUCGAAGCGGACUGCACACGGAGAAGCCCUGAUUCC
#=GR Stre.coel SS  ..........dddddd...<<<<<......<<<<<.....

Stre.coel	GCACCGUUGGACGCGGGUUCGAUUCCCGCCAUCUCCACCA
#=GR Stre.coel SS	.<<.<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Stre.equi DE converted from Zweib's tmRNA dataset 

Stre.equi		GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCCUAUU
#=GR Stre.equi SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Stre.equi	UUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAU
#=GR Stre.equi SS  >.>>>>>>>>>>AAAA<<<<......aaaa..........

Stre.equi	AACUGCAAAAAAUAACACAACUUACGCUUUAGCUGCCUAA
#=GR Stre.equi SS  .......................>>>>>...>>>>.....

Stre.equi	AAACCAGCCGGCGUGACUUCUAUAGGAUUGCUUGUGUCUU
#=GR Stre.equi SS  ....<<<<.<<<<<>>>>>>>>>>>>>>.BBBBBB<<<<<

Stre.equi	AUUAGAGGUCUCAAAACAGCAAGCUACGUUUAGGUGAUUG
#=GR Stre.equi SS  <<.<<<<<<<........bbbbbb....>>>>>>>>>..C

Stre.equi	UCUAGUCACCUAAAAAGAGAACCCUAGACUCGCAGGCUGA
#=GR Stre.equi SS  CCCCC<<<<<<<<<.........cccccc...>>>>>>>>

Stre.equi	UGGCUUGAGUUAUGUGUCCUUGGUCUGUUAAAGUAAGACA
#=GR Stre.equi SS  .>>>....DDDDDDD<<<.<<<<<<<<..........ddd

Stre.equi	UAACCUAUGGUUGUAGACAAAUAGGUUAGCAGGUGUUUGG
#=GR Stre.equi SS  dddd....<<<<<<....<<<<<<<<.....<<<<<<<<.

Stre.equi	ACGUGGGUUCGACUCCCACCAGCUCCACCA
#=GR Stre.equi SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Stre.muta DE converted from Zweib's tmRNA dataset 

Stre.muta		GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGACCUAUU
#=GR Stre.muta SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Stre.muta	UUGCGACUCAUCUAGCGGAUGUAAAACGCCAGUUAAAUAU
#=GR Stre.muta SS  >.>>>>>>>>>>A.AAA<<<<.....aaa.a.........

Stre.muta	AACUGCAAAAAAUACAAAUUCUUACGCAGUAGCUGCCUAA
#=GR Stre.muta SS  .......................>>>>>>..>>>>.....

Stre.muta	AAACCAGCCUGUGUGAUCAAUAACAAAUUGCUUGUGUUUG
#=GR Stre.muta SS  ....<<<<<<<<<<>>>>>>>>>>>>>>.BBBBBB<<<<<

Stre.muta	UUGAUUGGUCUUAUUGUUAACAAGCUACGUUAGAACUGAG
#=GR Stre.muta SS  <<.<<<<<<<.........bbbbbb....>>>>>>>.>.C

Stre.muta	UCAGGCUGUUCUAAAAGAGUUCUACUGACUCGCAUCGUUA
#=GR Stre.muta SS  CCCC.<.<<<<<<<..........ccccc...>>>>>>>>

Stre.muta	GAGUUUGAGUUAUGUAUUGUAACGGUGUUAAAUAAACACA
#=GR Stre.muta SS  .>>>....DDDDDDD<<<.<<<<<<<<..........ddd

Stre.muta	UAACCUAUAGUUGUAGACAAAUGGGUUAGCAGAUGUUUGG
#=GR Stre.muta SS  dddd....<<<<<<....<<<<<<<<.....<<<<<<<<.

Stre.muta	ACGUGGGUUCGACUCCCACCGGCUCCACCA
#=GR Stre.muta SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Syne.spec.-1 DE converted from Zweib's tmRNA dataset 

Syne.spec.-1		GGGGCCGCAAUGGUUUCGACAGGUUGGCGAAAGCUUGCC
#=GR Syne.spec.-1 SS  >>>>>>>............>>>>>>>>.....>>>>..>

Syne.spec.-1	CGUGAUACAGGUCGAGAGUGAGUCUCCUCUCGCAAAUCAA
#=GR Syne.spec.-1 SS  >>>...>>>>>>AAAAA.>>>>>>>..aaaaa........

Syne.spec.-1	AGGCUCAAAAAAAAGUAACUGCGAAUAACAUCGUCAGCUU
#=GR Syne.spec.-1 SS  <<<<<<<.................................

Syne.spec.-1	CAAACGGGUAGCCAUAGCAGCCUAGUCUGUAAAAGCUACA
#=GR Syne.spec.-1 SS  .......>>.>.>.>.>>>>....................

Syne.spec.-1	UUUUCUUGUCAAAGACCGUUUACUUCUUUUCUGACUCCGU
#=GR Syne.spec.-1 SS  .....<<<<..<.<.<.<<..>>>>>>.>>>>...BBBBB

Syne.spec.-1	UAAGGAUUAGAGGUUAACCCCAACGGAUGCUUUGUUUGGC
#=GR Syne.spec.-1 SS  B.<<<<..<<<<<<.......bbbbbb....>>>>>>>>>

Syne.spec.-1	UCUUCUCUAGUUAGCUAAACAAUCAAGACUCAGACUAGAG
#=GR Syne.spec.-1 SS  >...CCCCCCCC<<<<<<<<<<..........cccccccc

Syne.spec.-1	CAUCCCACCAUCAGGGAUAAUCGAUGGUCCCCGUCCUAGG
#=GR Syne.spec.-1 SS  .>>>>>..DDDD.<<<<<....ddddE.EE..>>>>>..e

Syne.spec.-1	GCUAGAAGGACUAAACCUGUGAAUGAGCGGAAAGUUAAUA
#=GR Syne.spec.-1 SS  e.e...<<<<<...<<<<<<......<<<<.<<<<.....

Syne.spec.-1	CCCAGUUUGGACAGCAGUUCAAUUCUGCUCGGCUCCACCA
#=GR Syne.spec.-1 SS	.<<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Syne.spec.-2 DE converted from Zweib's tmRNA dataset 

Syne.spec.-2		GGGGCUGUAAUGGUUUCGACGUGUUGGUGAAUCCUUCAC
#=GR Syne.spec.-2 SS  >>>>>>>............>>>>>>>>......>>>..>

Syne.spec.-2	CGUGAUUCAGGCCGAGAGGGAGUCCACUCUCGUAAAUCCA
#=GR Syne.spec.-2 SS  >>>....>>>>>>>>>>..AAAAA...<<<<<........

Syne.spec.-2	GGCUCAACCAAAAGUAACUGCGAACAACAUCGUUCCUUUC
#=GR Syne.spec.-2 SS  aaaaa...................................

Syne.spec.-2	GCUCGUAAGGCUGCUCCUGUAGCUGCUUAAACGCCACAAA
#=GR Syne.spec.-2 SS  ...............>.>>.>>>>>...............

Syne.spec.-2	CUUUCUGGCUCGAGCGUCUAGUCGUAGACUCCGUUAAUAC
#=GR Syne.spec.-2 SS  .....<<<<<<<.<.>>>>>>.>>>>...BBBBBB..<<<

Syne.spec.-2	GCCUAGACUUAAACCCCCAACGGAUGCUCGAGUGGCGGCC
#=GR Syne.spec.-2 SS  <.<<<<<<..........bbbbbb....>>>>.>>>>>.C

Syne.spec.-2	UCAGGUCCGUCCUCUCGCUAAGCAAAAACCUGAGCAUCCC
#=GR Syne.spec.-2 SS  CCCCCC<<<<<..<<<<..........ccccccc.>>>>>

Syne.spec.-2	GCCAACGGGGAUAAUCGUUGGCUCCCGCACAGUGGGUCAA
#=GR Syne.spec.-2 SS  ..DDDDD<<<<<...ddddd>>>>..EEEE...<<<<...

Syne.spec.-2	CCGUGCUAAGCCUGUGAACGAGCGGAAAGUUACUAGUCAA
#=GR Syne.spec.-2 SS  ..eeee...<<<<<.......<<<<.<<<.......<<<<

Syne.spec.-2	UGCGGACAGCGGUUCGAUUCCGCUCAGCUCCACCA
#=GR Syne.spec.-2 SS	<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Thal.weis.cl DE converted from Zweib's tmRNA dataset 

Thal.weis.cl		GGGGCUGAUUUGGUUUCGACAUUUAAAACUUCUUUCUAU
#=GR Thal.weis.cl SS  >>>>>>>............>>>>>>>>....>>>....>

Thal.weis.cl	GUGUCAGGUCAAAGUUUGUAUUCUUUGUAAAAAAAUACUA
#=GR Thal.weis.cl SS  .>>>>>>>>>>>>>...AAAAA<<<<<......aaaaa..

Thal.weis.cl	AAAUACUAAUAAAUGCUAAUAAUAUAAUACCGUUUAUUUU
#=GR Thal.weis.cl SS  ........................................

Thal.weis.cl	UAAAGCAGUAAAAACAAAAAAAGAAGCAAUGGCUUUAAAU
#=GR Thal.weis.cl SS  ....................................>>>>

Thal.weis.cl	UUUGCUGUAUAGUUCAUUAACUUAGGUUAUUAAAUAUUUU
#=GR Thal.weis.cl SS  .>>>.>>....................<<.<.<<.<<<<.

Thal.weis.cl	UUCAUUAUAACUGGACUUUUCUCUAGUUUAUAGUUUAGAA
#=GR Thal.weis.cl SS  ...>>>>>>>>>>>>.B.BBB<<<<<.<<<<<<<...bbb

Thal.weis.cl	UAAAUUUAAAUUUUGCAAAACUCGUUCGAAAAUUUUCGGG
#=GR Thal.weis.cl SS  .b.................C.C.>>>>>>>c.c.<<<<<<

Thal.weis.cl	CUAAACCUGUAAACGCAAAUACUAAGAAAUUUUAGAUGGA
#=GR Thal.weis.cl SS  <...<<<<<.....<<<.<....<<<....<<<<<<<<..

Thal.weis.cl	CAUGGGUUCAAUUCCCAUCAGUUCCACCA
#=GR Thal.weis.cl SS	.>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ther.fusc DE converted from Zweib's tmRNA dataset 

Ther.fusc		GGGGGUGAUCGGUUUCGACUUCGAUGGUUGUUGUAGGGG
#=GR Ther.fusc SS  >>>>>>>...........>>>>>>>>......>>>>>.>

Ther.fusc	AAGCGGGCCGAGGAGAGCGGACGCAGCCUCGUUAAAAAUG
#=GR Ther.fusc SS  ...>>>>>AAAAA....>>>.>>>..aaaaa........<

Ther.fusc	CGACCGCGAAAAAAUAAGUGCCAACUCUAAGCGCACUGAG
#=GR Ther.fusc SS  <<.<<<..................................

Ther.fusc	UUCGCUCUCGCUGCUUGAUCGAGAGUGACUCUGUCGGCCU
#=GR Ther.fusc SS  .......>>>>>...........<<<<<...>>>>>>.>>

Ther.fusc	GGGAGCGUCUCCGACCCAGUGUCCGGCAUCGUUGAGGAGA
#=GR Ther.fusc SS  >>>..>BBBBBB<.<<<<<...<<<<<<.......bbbbb

Ther.fusc	CUUGCCGGUCAGAUCAGGCCACAGGAUCUGACUGGGACAU
#=GR Ther.fusc SS  b...>>>>>>>>>>>..CCCCCCC<<<<<<<<<<<.....

Ther.fusc	GCUCUGUGGCUGGGCCUGUCGGCGACUUGUCUGCGUGAGC
#=GR Ther.fusc SS  ...ccccccc..>>>>>....>>>....DDDDDD.<<..<

Ther.fusc	GCCGGGGCCGAGGAGAACGCUGAGCAGACUGCGCCCGGAG
#=GR Ther.fusc SS  ....<<<<<..............dddddd...<<<<<...

Ther.fusc	AAGCCCUGCUGCAGCAUCGAAGGACGCGGGUUCGAUUCCC
#=GR Ther.fusc SS  ...<<<<<<.....<<<<<<<<...>>>>>.......<<<

Ther.fusc	GCCACCUCCACCA
#=GR Ther.fusc SS	<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ther.mari DE converted from Zweib's tmRNA dataset 

Ther.mari		GGGGGCGAACGGGUUCGACGGGGAUGGAGUCCCCUGGGA
#=GR Ther.mari SS  >>>>>>>...........>>>>>>>>..>>>>.>>>>>.

Ther.mari	AGCGAGCCGAGGUCCCCACCUCCUCGUAAAAAAGGUGGGA
#=GR Ther.mari SS  ..>>>>>AAAAA..>>>>>>>aaaaa......<<<<<<<.

Ther.mari	CAAAGAAUAAGUGCCAACGAACCUGUUGCUGUUGCCGCUU
#=GR Ther.mari SS  .................................>>>>...

Ther.mari	AAUAGAUAAGCGGCCGUCCUCUCCGAAGUUGGCUGGGCUU
#=GR Ther.mari SS  ..........<<<<>>>>>>>>>>>>>>>>BBBBB<<<<<

Ther.mari	CGGAAGAGGGCGUGAGAGAUCCAGCCUACCGAUUCAGCUU
#=GR Ther.mari SS  <<<<.<<<<<<<.........bbbbb..>>>>>>>>>.>>

Ther.mari	CGCCUUCCGGCCUGAAUCGGGAAAACUCAGGAAGGCUGUG
#=GR Ther.mari SS  .CCCCCCC<<.<<<<<<<<<.........ccccccc..>>

Ther.mari	GGAGAGGACACCCUGCCCGUGGGAGGUCCCUCCCGAGAGC
#=GR Ther.mari SS  >>>>.>>....>>.DDDDDDD<<...<<.<<<<<<.....

Ther.mari	GAAAACACGGGCUGCGCUCGGAGAAGCCCAGGGGCCUCCA
#=GR Ther.mari SS  .....ddddddd...<<<<<......<<<<<<<<<...<<

Ther.mari	UCUUCGGACGGGGGUUCGAAUCCCCCCGCCUCCACCA
#=GR Ther.mari SS	<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ther.teng DE converted from Zweib's tmRNA dataset 

Ther.teng		GGGGGUGUGUUGGUUUCGACGGGGGCGGUCGAGGUAAAA
#=GR Ther.teng SS  >>>>>>>............>>>>>>>>.....>>>>>>>

Ther.teng	GUAGCGAGCCGAGUUCUCCACCAGCUCGUAAAAAAGGUGG
#=GR Ther.teng SS  >>..>>>>>AAAAA..>>>>>>.aaaaa.......<<<<<

Ther.teng	AAAAAAAUAAACGCAGACAGAGAACUCGCUUACGCUGCCU
#=GR Ther.teng SS  <............................>>>>>>>>...

Ther.teng	AAUUAAAGGCGGCCGUCCAGCCUGAAAUGCCCACGUUUCA
#=GR Ther.teng SS  .........<<<<.<<..<<...........>.>>>>>..

Ther.teng	GGACUGGGCGUCAAAAGAGUGGGGAACUGGUUUUGCCUGC
#=GR Ther.teng SS  >>........<<.<<...<<<.<...>>>>>>>>>>>>..

Ther.teng	GCCUCGGGGCAAAACCGGAAUAAUGAGGCUACCGAAGCGG
#=GR Ther.teng SS  BBBBB.<<<<<<<<<<<<......bbbbb..>>..>>>>>

Ther.teng	UUAUCCUGUCGCUGGGAGAACCGCUGAGGGAAAGCUAAAA
#=GR Ther.teng SS  >..>.>..CCCCC..<.<.<<<<<<..<<..........c

Ther.teng	CAGCGACUGCGCUCGGAGAAGCUUUUACCGGGACGCCUUC
#=GR Ther.teng SS  ..cccc....<<<<<.....<<<<<<<<<....<<<<<<<

Ther.teng	GGACCGGGGUUCGAAUCCCCGCACCUCCACCA
#=GR Ther.teng SS	<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Ther.ther DE converted from Zweib's tmRNA dataset 

Ther.ther		GGGGGUGAAACGGUCUCGACGGGGGUCGCCGAGGGCGUG
#=GR Ther.ther SS  >>>>>>>............>>>>>>>>......>>>>.>

Ther.ther	GCUGCGCGCCGAGGUGCGGGUGGCCUCGUAAAAACCCGCA
#=GR Ther.ther SS  >>>>>>>>>AAAAA.>>>>>>..aaaaa.....<<<<<<.

Ther.ther	ACGGCAUAACUGCCAACACCAACUACGCUCUCGCGGCUUA
#=GR Ther.ther SS  ..............................>>>>>>....

Ther.ther	AUGACCGCGACCUCGCCCGGUAGCCCUGCCGGGGGCUCAC
#=GR Ther.ther SS  ....<<<<<<>>>>>>.>>>>>>>>..BBBBBB<<<<.<<

Ther.ther	CGGAAGCGGGGACACAAACCCGGCUAGCCCGGGGCCACGC
#=GR Ther.ther SS  <<...<<<<<<.......bbbbbb..>>>>>>>>..>.CC

Ther.ther	CCUCUAACCCCGGGCGAAGCUUGAAGGGGGCUCGCUCCUG
#=GR Ther.ther SS  CCCC<..<<<<<<<<..........cccccc...>>>>>>

Ther.ther	GCCGCCCGUCCGCGGGCCAAGCCAGGAGGACACGCGAAAC
#=GR Ther.ther SS  >>.>>>.DDDDDDD<<<...<<<<<<<<...........d

Ther.ther	GCGGACUACGCGCGUAGAGGCCCGCCGUAGAGACCUUCGG
#=GR Ther.ther SS  dddddd...<<<<<<...<<<<<<<<.....<<<<<<<<.

Ther.ther	ACGGGGGUUCGACUCCCCCCACCUCCACCA
#=GR Ther.ther SS	..>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Trep.dent DE converted from Zweib's tmRNA dataset 

Trep.dent		GGGGAUGUUCCGGUUUCGACCGGAAAGACGGAGGCUUAA
#=GR Trep.dent SS  >>>>>>>............>>>>>>>>.....>>.>>>>

Trep.dent	GCUGCAGGCGGAGUGCCGAUCUCCUGAUUCGGCAAACACU
#=GR Trep.dent SS  >>.>>>>>>AAAA>>>>>>.aaaa....<<<<<<......

Trep.dent	AUAACUGCCGAAAAUAACGACAGUUUCGAUUACGCCUUAG
#=GR Trep.dent SS  .....................................>.>

Trep.dent	CUGCAUAAUCGCGGAAUCUGCUUUGCACUGCUCCGAGCGG
#=GR Trep.dent SS  >.>.....<.<<<>>>>>..>>>>>..>>BBBBBB<<<<<

Trep.dent	GGCAUGAUUCCGACGCCAAUCGGGGCUUGCUUUUUAGCGG
#=GR Trep.dent SS  <<...<<<<<..........bbbbbb...>>>>>>...>>

Trep.dent	CGUGUAAACGUUAAAAGGGACUUUUUUUACACUAAGGAUU
#=GR Trep.dent SS  >>CCCCCC<<<<<<<<<<.......cccccc....>>>>>

Trep.dent	CGACGCUUUCGGUGCUGCUACCGGAUCCCUACAACCACCU
#=GR Trep.dent SS  >>..>.>.DDDDDDD.<.<..<<<<<<<............

Trep.dent	CGCACCGAUAAGCCUGUAGACGCUUCUGAUUCCCUUUUCG
#=GR Trep.dent SS  .ddddddd...<<<<<<....<<<<..<<.<<.<<<<<<<

Trep.dent	GGACGGGGGUUCAAUUCCCCCCAUCUCCACCA
#=GR Trep.dent SS	<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Trep.pall DE converted from Zweib's tmRNA dataset 

Trep.pall		GGGGAUGACUAGGUUUCGACUAGGGAUGUGGGGUGUUGC
#=GR Trep.pall SS  >>>>>>>............>>>>>>>......>>>>>>>

Trep.pall	GCUGCAGGUGGAGUGUCGAUCUCCUGAUUCGGCGCCUUUA
#=GR Trep.pall SS  >>.>>>>>>AAAA>>>>>>.aaaa....<<<<<<......

Trep.pall	UAACUGCCAAUUCUGACAGUUUCGACUACGCGCUCGCCGC
#=GR Trep.pall SS  .................................>.>>.>.

Trep.pall	GUAAUCGCGGGCCUGUGUUUGCGCUGCUCUGAGCGAACAU
#=GR Trep.pall SS  ....<.<<<>>>>.>>>>>>>..>>BBBBBB<<<<<<<..

Trep.pall	AUCGGCCCGACGCCAAACGGAGCUUGCUCUUACGUUGUGC
#=GR Trep.pall SS  <<.<<<<..........bbbbbb...>>>>>>>>>>>CCC

Trep.pall	ACGGCGGACGUAGGGGGACUUUUGUCUGUGCUAAGACUCU
#=GR Trep.pall SS  C.CC<<<.<<<<<<<<........cccccc....>>>>>>

Trep.pall	GGCGCGUGCGGUGCAGGCCUAGCAGAGUCCGACAAACGCA
#=GR Trep.pall SS  >..>>.>DDDDDDD<.<..<..<<<<<<<...........

Trep.pall	GUACGCACCGCUAAACCUGUAGGCGCGCAGCACUCGCUCU
#=GR Trep.pall SS  ....ddddddd...<<<<<<....<<<<<<<<<....<<<

Trep.pall	UUAGGACGGGGGUUCGAUUCCCCCCAUCUCCACCA
#=GR Trep.pall SS	<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Tric.eryt DE converted from Zweib's tmRNA dataset 

Tric.eryt		GGGGCAUUAACGGUUUCGACAGGGUGGUGAAAUCUGCUU
#=GR Tric.eryt SS  >>>>>>>............>>>>>>>>....>>>>...>

Tric.eryt	UGUGAUGCAGGCCGAGAGUGAGUCUUCUCUCGAAAAUCCU
#=GR Tric.eryt SS  >>>...>>>>>.AAAAA.>>>>>>>..aaaaa........

Tric.eryt	GGACUCAAAAAAUAAUAAGUGCAAACAACAUUGUACCUUU
#=GR Tric.eryt SS  <<<<<<<.................................

Tric.eryt	UGCUCGUAAGCAAGUAGCUGCUCUAGCUUAAUUGCAAAAA
#=GR Tric.eryt SS  .............>>....>>>..>>..............

Tric.eryt	CACCUCUUAUAGGUUCGAGCGUCUGUGGUUUGACUCCGUU
#=GR Tric.eryt SS  .....<<....<<<....<<>>>>>>>>>>....BBBBBB

Tric.eryt	AAUAAUUGCAGACUUAACCCCAACGGAUGCUCUAGCAAUU
#=GR Tric.eryt SS  ...<<<<<<<<<<........bbbbbb....>>>>>....

Tric.eryt	UUUCUCUGGUUACCUGCUAGUUAAGAUUUAACCAGAGCAU
#=GR Tric.eryt SS  ...............<<<<<..................>>

Tric.eryt	CCCACUAUCCGGGAUAAUGGAUAGUCCCAGCUCUGAGGGU
#=GR Tric.eryt SS  >>>..CCCCC<<<<<...cccccDDDD..>>>>>..dddd

Tric.eryt	UAAGAAGGGCUAAACCUGUGAAUGAGUGAAGGGUGAAUAG
#=GR Tric.eryt SS  .....<<<<<....<<<<<......<<<<.<<<<......

Tric.eryt	CCAUUUUGGACAUGGGUUCGACUCCCAUAUGCUCCACCA
#=GR Tric.eryt SS	<<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Trop.whip DE converted from Zweib's tmRNA dataset 

Trop.whip		GGGGAUGACUGGUUUCGACGCUGUUUGUGUACUCGUGGG
#=GR Trop.whip SS  >>>>>>>...........>>.>>>........>>>>>.>

Trop.whip	AAGCGGGUCGAGGAUGCGAGGUUGUCUCGUUAACGAUCCU
#=GR Trop.whip SS  ..>>>>>>AAAAA..>>>>>>...aaaaa........<<<

Trop.whip	CGCAAAAUAUAAGUGCCAACUUAAAGCGCACUGAUCUAAG
#=GR Trop.whip SS  <<<.....................................

Trop.whip	UCUUGCUGCUUAAGCGCUUAGAUCUGUCGGUAUAGGGCUU
#=GR Trop.whip SS  ..>>>.>>......<<.<.<<...>>>>>>..>>>>>.>>

Trop.whip	GUCUUCGGCCCUGUAUCCGGCAUGGUUUUAGAGGACUUGC
#=GR Trop.whip SS  BBBBBB<<<<<<<...<<<<<<........bbbbbb...>

Trop.whip	CGCGUGUUUGCCGCUUGCGUGAACACCGGGACUUUAUUGC
#=GR Trop.whip SS  >>.>>>>>>>>.CCCCCC<<<<<<<<<<<.........cc

Trop.whip	AAGCUGGGCCUGUUGAUUUAGAUUCCGCUGCAAAGAAUCA
#=GR Trop.whip SS  cccc..>>>>>>.>..>>.....DDDDDDD.<<...<.<.

Trop.whip	GGGCUGAGUAUAACGGUUUUAGCGGAUACACCCGUAGAAG
#=GR Trop.whip SS  <<<<<..............ddddddd...<<<<<<.....

Trop.whip	UCACGGGCUCCAUGCCGCGGACGGGGGUUCGAUUCCCCCC
#=GR Trop.whip SS  <<<<<<.......<<.<<<...>>>>>.......<<<<<<

Trop.whip	AUCUCCACCA
#=GR Trop.whip SS	<<<<<<....

//
# STOCKHOLM 1.0

#=GS Urea.urea DE converted from Zweib's tmRNA dataset 

Urea.urea		GGGGAUGUCACGGUUUCGACGUGACACAUUAAUUUUUAA
#=GR Urea.urea SS  >>>>>>>............>>>>>>>>....>>>..>>>

Urea.urea	UUGCAGUGGGGUUAGCCCCUUAUCGCUUUCGAGGCAUUUU
#=GR Urea.urea SS  >.>>>>>>>>>>..A...AAA...<<<<<..aaa...a..

Urea.urea	AAAUGCAGAAAAUAAAAAAUCUUCUGAAGUAGAAUUAAAC
#=GR Urea.urea SS  ........................................

Urea.urea	CCAGCGUUUAUGGCUUCAGCUACUAAUGCAAACUACGCUU
#=GR Urea.urea SS  ....................................>.>>

Urea.urea	UUGCGUACUAAUUAGUUAUUAGUAGAAACGUUCAUUAACA
#=GR Urea.urea SS  >>>...................<<<<<.<>>>....>>.>

Urea.urea	UAAUUACUAUUGGUUGGUUUUUGGGCUUAUUUUACAAUAG
#=GR Urea.urea SS  .>>>.......BBBB.<<<.<.....<<.......<<<..

Urea.urea	UUUUAAAUUUAAAAUUCUUAUUUGUUGUUUAAAUUUAAAU
#=GR Urea.urea SS  ............bbbb...>>>>>>>>..C.CCCC<.<<<

Urea.urea	AGAUUUAACAAAUAGUUAGUUAAUUUUAAAUUUGUUUUAU
#=GR Urea.urea SS  <<<<.........cccc.c....>.>>>>..>>DDDD.DD

Urea.urea	UAGUUAUUAACUACACUAUUUUUAAUAAAACUAAACUGUA
#=GR Urea.urea SS  D<<...<<<<..<..........ddd.dddd...<<<<<.

Urea.urea	GAUAUUAUUAAUUAUGUGUUGCGGAAAGGGGUUCGACUCC
#=GR Urea.urea SS  ...<<<<..<<<...<<<<<<<<...>>>>>.......<<

Urea.urea	CCUCAUCUCCACCA
#=GR Urea.urea SS	<<<<<<<<<<....

//
# STOCKHOLM 1.0

#=GS Vibr.chol DE converted from Zweib's tmRNA dataset 

Vibr.chol		GGGGCUGAUUCAGGAUUCGACGGGAAUUUUGCAGUCUGA
#=GR Vibr.chol SS  >>>>>>>.............>>>>>>>>.....>>>>..

Vibr.chol	GGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGC
#=GR Vibr.chol SS  >>>>>>>>>>>>>>.AAAAA...<<<<<.......aaaaa

Vibr.chol	AAAAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAG
#=GR Vibr.chol SS  ..............................>>.>>.>>>>

Vibr.chol	CUUAAUACCCUGCUCAGAGCCCUUCCUCCCUAGCUUCCGC
#=GR Vibr.chol SS  .........<<<<..<<.<<>>>>>>>>>>>..>>>..BB

Vibr.chol	UUGUAAGACGGGGAAAUCAGGAAGGUCAAACCAAAUCAAG
#=GR Vibr.chol SS  BBB.<<<..<<<<.....<<<<<<<...........bbbb

Vibr.chol	CUGGCGUGGAUUCCCCCACCUGAGGGAUGAAGCGCGAGAU
#=GR Vibr.chol SS  b..>>>>....>>>>..CCCCCC<<<<....<<<<.....

Vibr.chol	CUAAUUCAGGUUAGCCAUUCGUUAGCGUGUCGGUUCGCAG
#=GR Vibr.chol SS  .....cccccc..>>>>>>.>>>.>>>.DDDDDDD<<<.<

Vibr.chol	GCGGUGGUGAAAUUAAAGAUCGACUAAGCAUGUAGUACCA
#=GR Vibr.chol SS  <<<<<<<<.........ddddddd...<<<<<<...<<<.

Vibr.chol	AAGAUGAAUGGUUUUCGGACGGGGGUUCAACUCCCCCCAG
#=GR Vibr.chol SS  .<<<<....<<<<<<<<...>>>>>.......<<<<<<<<

Vibr.chol	CUCCACCA
#=GR Vibr.chol SS	<<<<....

//
# STOCKHOLM 1.0

#=GS Wolb.spec DE converted from Zweib's tmRNA dataset 

Wolb.spec		GGGGACGAAUAAGGAUCGACAUGCAUAGUAAAGAUGGUA
#=GR Wolb.spec SS  >>>>>>>............>>>>>>>...>.>>..>>>>

Wolb.spec	GCUUUGCUCGGUUAGACACCACCGCUAAGAGUUCAUAAUU
#=GR Wolb.spec SS  >..>>>>>>>>>..AAA.A.<<<<....a.aaa.......

Wolb.spec	UAAAUGCAAACGAUAAUUUUGCUGCUGAAGACAAUGUCGA
#=GR Wolb.spec SS  ........................................

Wolb.spec	CGCAAUAGCUGCUUAAUUUAAGCACUAUAACUUCAUUGCU
#=GR Wolb.spec SS  .....>.>>>..........<<<<.>>>>.>......<.<

Wolb.spec	AUAAGCACGGUUCAGGGAACGCCGGGUAACAGAAGUUCCC
#=GR Wolb.spec SS  <<<.>>.>>>>...BBBBB.<<<<.<<........bbbbb

Wolb.spec	CAAAAGUACAUUUUGUGUACUAUAGCAAUAAAAUUACCUU
#=GR Wolb.spec SS  ..CCC>>>>..ccc..<<<<...<<<<<.....<<<<<<<

Wolb.spec	GUAAUAGGUGUAUUGGACCCGAGGGCAGUACUCGGCGUCU
#=GR Wolb.spec SS  .<.....<<<<<<.<...>>>>>.......<<<<<<<<<<

Wolb.spec	CCACCA
#=GR Wolb.spec SS	<<....

//
# STOCKHOLM 1.0

#=GS Xant.axon DE converted from Zweib's tmRNA dataset 

Xant.axon		GGGGGUGCACUGGUUUCGACGGGGGUCGCGAAGUCGCUU
#=GR Xant.axon SS  >>>>>>>............>>>>>>>......>>>.>.>

Xant.axon	GGCGCAUGCCGAGGGGGCAGCUUUCCUCGUUAAUCCAGCA
#=GR Xant.axon SS  >>>>>>>>>>>>>>..AA.AAA..<<<<<.......aaa.

Xant.axon	GCAAACUUUUAGUUGCCAACGAUGACAACUACGGUUCGGA
#=GR Xant.axon SS  aa......................................

Xant.axon	CUUCGCUAUCGCCGCUUAAUUGGCUUUAGUUGUAGUUCUA
#=GR Xant.axon SS  ....>>>>..>>>>......<<<<..<<<<..........

Xant.axon	CAGCCGCCUAAGGCGAACCCCCGAACCUACUUGUGCCCGU
#=GR Xant.axon SS  ................>>>>....>>>>>>..>...BBBB

Xant.axon	GCUCGUAGGUGUAGGGUCAUUAUCACGGAACCAUCGGUAG
#=GR Xant.axon SS  B<..<<<<<<...<<<<......bbbbb....>>>>>>..

Xant.axon	UGGCUGCCUGUCAGCUACCGGUCAGAUAAAGCAGGCUGGU
#=GR Xant.axon SS  >>...CCCCCC<<...<<<<<<........cccccc..>>

Xant.axon	UUCCAGGUGCGCUUUGCCAACCGUGCUGCCUGGGAACGAG
#=GR Xant.axon SS  >>>>>>>>.>>>...DDD..DD<<<..<<<<<<<<<<...

Xant.axon	AUCUAACGGAGGGCUAAGCAUGUAGUGCUGGGGAUGGAGU
#=GR Xant.axon SS  .......dd..ddd...<<<<<<...<<<<<.<<<.....

Xant.axon	GCUUCCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
#=GR Xant.axon SS	<<<<<<<...>>>>>.......<<<<<<<<<<<<....

//