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The Pfam database of protein family alignments and profile hidden Markov models. |
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The Rfam database of RNA alignments, consensus secondary structure, and covariance models (profile SCFGs). |
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Phylogenomic analysis of a protein sequence using the RIO algorithm (resampled inference of orthology). |
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Find and annotate tRNA genes in a DNA sequence using tRNAscan-SE. |
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Database of small nucleolar RNA genes from yeast and Archaea. (Now hosted in Todd Lowe's lab at UC Santa Cruz.) |
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Database of tRNA genes in sequenced genomes. (Hosted in Todd Lowe's lab at UC Santa Cruz.) |
