# Candidate E. coli sRNA loci, predicted by QRNA screen # Rivas et al., Curr Biol 11:1369-1373 (2001). # # This table was produced in Jan 2011 from the original supplementary # material of Rivas et al. (2001), in order to help people parse the # data more easily and accurately. The data were converted from .tex # table format to a simpler tabular format. Several typos in coords # were fixed (3 candidate loci tpe4, tpk4, and tpe1; and 8 ORF # annotations). # # Note that all coords are relative to E. coli M52 annotation, circa # 2001. M52 is Refseq NC_000913.1, available in NCBI archives. The # current E. coli genome assembly is a different coordinate system. # For a file that maps all these coords onto NC_000913.2 (the current # E. coli genome assembly as of Jan 2011), see rivas01.candidates.tbl.2. # # The data below have the following whitespace-delimited columns: # number>name The number is 1..275: 275 candidates with QRNA bitscore > 5.0 # The name is (in part) constructed from single letters of genus/species # names of comparative genomes that the E. coli sequence was aligned to. # start/end QRNA doesn't assign strand - a conserved RNA structure on one strand # looks good on the other strand too. # source All coordinates are relative to E. coli assembly M52, NCBI RefSeq NC_000913.1 # bitsc QRNA bit score for the "RNA" model # up_gene Closest upstream coding gene, in M52 ORF annotation # up_gene_coords ORF coords for upstream gene, followed by > or < for gene direction # down_gene Closest downstream coding gene, in M52 ORF annotation # down_gene_coords ORF coords for downstream gene, followed by > or < for gene direction # C|T|- C indicates "confirmed", we did a Northern and saw a small RNA (11 total) # T indicates "tested", we did a Northern and didn't see a small RNA (38 total) # - means nothing, just to mark the column with something if there's something # in the other_gene_names column. # other_gene_names Other gene names for this locus, circa 2001. # # All lines beginning with '#' are comments. # All other non-blank lines are data. # # SRE, Sat Jan 22 18:13:52 2011 # # number>name start end source bitsc up_gene up_gene_coords down_gene down_gene_coords C|T|- other_gene_names # ---------- ------- ------- ----------- ------ ------- --------------- --------- ---------------- ------ ---------------- 57>tke2 257 337 NC_000913.1 15.16 thrL 190-255> thrA 337-2799> 113>tp27 9193 9306 NC_000913.1 11.06 talB 8238-9191> mog 9306-9893> 16>tpke11 14081 14169 NC_000913.1 22.33 dnaK 12163-14079> dnaJ 14168-15298> C 219>tpe88 16979 17095 NC_000913.1 6.95 gefL 16751-16960< nhaA 17489-18655> 115>pe6 49634 49819 NC_000913.1 11.04 kefC 47769-49631> folA 49823-50302> 132>pe8 58182 58238 NC_000913.1 10.13 yabH 57364-58179> yabP 58474-59124> 173>tpe79 75482 75644 NC_000913.1 8.56 tbpA 74497-75480< yabN 75644-77299< 55>tpe18 83537 83622 NC_000913.1 15.23 leuA 81958-83529< leuL 83622-83708< 19>tpe6 85320 85516 NC_000913.1 21.63 leuO 84191-85312> ilvI 85540-87354> T 268>k51 107497 107556 NC_000913.1 5.17 lpxC 106557-107474> yacA 107630-108217> 9>tp2 122859 123017 NC_000913.1 24.99 pdhR 122092-122856> aceE 123017-125680> C 83>tpe34 136467 136570 NC_000913.1 13.13 speE 135598-136464< yacC 136570-137040< 227>tpe90 182320 182440 NC_000913.1 6.62 htrA 180884-182308> yaeG 182445-183620> 54>t44 189628 189878 NC_000913.1 15.29 map 188712-189506< rpsB 189874-190599> C 85>tk7 191710 191855 NC_000913.1 13.03 tsf 190857-191708> pyrH 191855-192580> 14>tpe3 193445 193521 NC_000913.1 23.88 frr 192872-193429> yaeM 193521-194717> T 251>tp51 201998 202100 NC_000913.1 5.83 lpxD 200971-201996> fabZ 202101-202556> 243>tk18 219997 220112 NC_000913.1 6.14 rcsF 219591-219995< yaeC 220113-220928< 193>t47 229006 229164 NC_000913.1 7.56 yaeD 222833-223408> yafB 229167-229970> 195>pe13 230998 231122 NC_000913.1 7.52 yafC 229967-230881< yafD 231122-231922> 109>k15 261982 262095 NC_000913.1 11.33 proA 260727-261980> b0245 262552-262893< 199>k34 309252 309308 NC_000913.1 7.49 yagY 308582-309250< yagZ 309308-309895< 153>p14 402834 402927 NC_000913.1 9.44 psiF 402487-402825> yaiC 402927-404042> 224>tp47 418413 418609 NC_000913.1 6.71 phoR 417113-418408> brnQ 418815-420134> 144>pe11 420136 420210 NC_000913.1 9.73 brnQ 418815-420134> b0402 420210-421583> 249>p27 434786 434858 NC_000913.1 5.96 nusB 434361-434780> b0417 434858-435835> 270>tp55 450836 451032 NC_000913.1 5.16 cyoA 449887-450834< ampG 451294-452769< 101>tpe43 451113 451294 NC_000913.1 11.80 cyoA 449887-450834< ampG 451294-452769< T 10>t2 454015 454261 NC_000913.1 24.93 bolA 453663-454013> tig 454357-455655> T 3>te1 455657 455865 NC_000913.1 32.63 tig 454357-455655> clpP 455901-456524> T 81>t15 457926 458112 NC_000913.1 13.41 clpX 456650-457924> lon 458112-460466> - sraA 94>t22 460468 460675 NC_000913.1 12.20 lon 458112-460466> hupB 460675-460947> 189>t45 460949 461092 NC_000913.1 7.80 hupB 460675-460947> b0441 461139-463010> 163>e8 463012 463120 NC_000913.1 8.86 b0441 461139-463010> b0442 463161-463532> 102>t24 463535 463601 NC_000913.1 11.71 b0442 463161-463532> b0443 463626-464024> 272>k52 484845 484985 NC_000913.1 5.09 acrA 483650-484843< acrR 484985-485632> 64>pk1 502518 502700 NC_000913.1 14.54 ybaL 500786-502462< fsr 502700-503920< 206>k38 594691 594813 NC_000913.1 7.31 b0571 593983-594666< b0572 594823-596196> 111>pe5 617278 617336 NC_000913.1 11.20 entF 613380-617261> fepE 617477-618610> 192>k32 643240 643378 NC_000913.1 7.56 rnk 642780-643190< rna 643420-644226< 93>tk8 661867 661975 NC_000913.1 12.21 ybeD 661602-661865< dacA 661975-663186< 204>k36 668153 668345 NC_000913.1 7.40 ybeB 667942-668151< phpB 668519-669130< 122>tp28 709961 710158 NC_000913.1 10.62 fur 709423-709869< fldA 710158-710688< 114>p12 711192 711261 NC_000913.1 11.06 b0685 710828-711190< b0686 711261-712025< 256>e17 719685 719844 NC_000913.1 5.66 speF 717485-719683< kdpE 720279-720956< 254>k48 764274 764375 NC_000913.1 5.72 sucD 763403-764272> farR 764376-765098< 73>tpe29 773827 773975 NC_000913.1 13.84 ybgE 773532-773825> ybgC 773975-774379> 135>tk12 808482 808566 NC_000913.1 10.09 bioA 807191-808480< bioB 808567-809607> 252>e16 829880 830077 NC_000913.1 5.82 ybiH 829195-829878< rhlE 830095-831459> 242>p25 887194 887357 NC_000913.1 6.15 b0846 886646-887182> b0847 887357-889042< - rybB 236>tk16 892670 892870 NC_000913.1 6.35 b0853 892180-892656> potF 893007-894119> 21>k2 914218 914570 NC_000913.1 21.47 b0874 913181-914128< aqpZ 914575-915270< T 72>tk5 921522 921589 NC_000913.1 13.88 b0879 919570-921516> cspD 921589-921813< 260>t70 925385 925443 NC_000913.1 5.57 clpA 922487-924763> infA 925448-925666< 30>t6 932314 932446 NC_000913.1 19.45 lrp 931818-932312> ftsK 932447-936436> T 237>k45 938568 938651 NC_000913.1 6.34 ycaJ 937217-938560> serS 938651-939943> 147>k25 950305 950479 NC_000913.1 9.64 pflA 949563-950303< pflB 950495-952777< 117>t25 960253 960424 NC_000913.1 10.97 b0909 959463-960251> cmk 960424-961107> 11>tpe1 962893 963051 NC_000913.1 24.75 rpsA 961218-962891> himD 963051-963335> T 137>pe10 963339 963394 NC_000913.1 10.02 himD 963051-963335> ycaI 963465-965807> 233>k43 982119 982278 NC_000913.1 6.43 ycbB 980270-982117> b0926 982298-982846> 158>tpke118 984934 985118 NC_000913.1 9.14 aspC 983742-984932< ompF 895117-986205< T 205>t51 986207 986403 NC_000913.1 7.35 ompF 985117-986205< asnS 986808-988208< 146>t30 1005016 1005137 NC_000913.1 9.65 pyrD 1003991-1005001> b0946 1005139-1005717> 217>p23 1014688 1014884 NC_000913.1 6.99 b0952 1014134-1014682> rmf 1014938-1015105> 45>e3 1018167 1018227 NC_000913.1 16.21 ycbG 1017708-1018160> ompA 1018236-1019276< 79>k10 1080042 1080191 NC_000913.1 13.52 putP 1078528-1080036> b1016 1080570-1080689> 220>t56 1121839 1121932 NC_000913.1 6.90 pyrC 1120784-1121830< yceB 1121936-1122496< 194>t48 1140213 1140293 NC_000913.1 7.55 flgL 1139256-1140209> rne 1140405-1143590< 151>pke2 1145858 1146016 NC_000913.1 9.50 yceF 1145234-1145857< yceD 1146017-1146538> - sraB 214>t54 1146775 1146874 NC_000913.1 7.03 rpmF 1146590-1146763> plsX 1146874-1147914> 269>t74 1152418 1152520 NC_000913.1 5.17 fabF 1151162-1152403> pabC 1152523-1153332> 240>t62 1156799 1156996 NC_000913.1 6.23 ycfH 1156000-1156797> ptsG 1157092-1158525> 100>t23 1158528 1158585 NC_000913.1 11.81 ptsG 1157092-1158525> fhuE 1158585-1160774< 46>tpk6 1165110 1165308 NC_000913.1 16.16 b1108 1164309-1164908> ndh 1165308-1166612> 209>e13 1195607 1195705 NC_000913.1 7.21 icdA 1194346-1195596> b1137 1196090-1196755< 250>t64 1210669 1210859 NC_000913.1 5.91 mcrA 1209569-1210402> b1160 1210903-1211226< 263>k49 1227965 1228023 NC_000913.1 5.46 b1180 1227302-1227961> b1181 1228023-1228499> 82>tp21 1255837 1255942 NC_000913.1 13.34 b1202 1252308-1255175< ychF 1255944-1257035< 150>p13 1268489 1268737 NC_000913.1 9.59 kdsA 1267388-1268242> chaA 1269972-1271072< 181>tpe83 1269024 1269272 NC_000913.1 8.09 kdsA 1267388-1268242> chaA 1269972-1271072< 246>tpe95 1269546 1269836 NC_000913.1 6.04 kdsA 1267388-1268242> chaA 1269972-1271072< 203>k35 1300839 1300923 NC_000913.1 7.44 oppA 1299206-1300837> oppB 1300923-1301843> 200>k33 1318464 1318648 NC_000913.1 7.49 trpC 1316451-1317812< trpE 1319408-1320970< 149>t31 1331692 1331743 NC_000913.1 9.61 topA 1329072-1331669> cysB 1331879-1332853> 141>t29 1415412 1415512 NC_000913.1 9.79 recE 1412810-1415410< racC 1415512-1415787< 258>t68 1416267 1416417 NC_000913.1 5.58 ydaD 1416032-1416265< sieB 1416572-1417183> 245>tke8 1435054 1435279 NC_000913.1 6.07 b1377 1433784-1434917< b1378 1435284-1438808< 38>te3 1553785 1553846 NC_000913.1 17.63 sfcA 1551996-1553720< rpsV 1553850-1553987< 172>te18 1643052 1643143 NC_000913.1 8.59 rem 1642675-1642926< relF 1643143-1643298< 273>p31 1687778 1687872 NC_000913.1 5.05 manA 1686600-1687775> b1614 1687876-1689384> 191>pk4 1712299 1712401 NC_000913.1 7.63 b1634 1710793-1712295> gst 1712401-1713006> 62>tpe20 1733277 1733402 NC_000913.1 14.61 b1655 1732459-1733274> sodB 1733402-1733983> 136>e6 1753526 1753722 NC_000913.1 10.03 b1675 1752956-1753165< pykF 1753722-1755134> 198>t50 1755137 1755334 NC_000913.1 7.50 pykF 1753722-1755134> lpp 1755445-1755681> 15>t3 1755683 1755734 NC_000913.1 23.48 lpp 1755445-1755681> b1678 1755745-1756749< T 22>tpe7 1762685 1762875 NC_000913.1 21.30 b1684 1762042-1762410< b1685 1762958-1763227< C rydB 50>tp13 1793178 1793272 NC_000913.1 15.52 btuC 1792196-1793176< himA 1793277-1793576< 164>te16 1797175 1797248 NC_000913.1 8.85 pheS 1795983-1796966< pheM 1797250-1797294< 182>tke6 1797296 1797417 NC_000913.1 8.06 pheM 1797250-1797294< rplT 1797417-1797773< 95>pk2 1798025 1798120 NC_000913.1 12.18 rpmI 1797826-1798023< infC 1798120-1798662< 39>p5 1823032 1823156 NC_000913.1 16.94 b1742 1822386-1823024< b1743 1823164-1823649< T 87>t17 1860602 1860795 NC_000913.1 12.85 b1778 1860040-1860453< gapA 1860795-1861790> 103>tpk13 1861792 1861849 NC_000913.1 11.64 gapA 1860795-1861790> b1780 1861853-1862758> 234>p24 1886017 1886085 NC_000913.1 6.42 rnd 1884888-1886015< fadD 1886085-1887770< 98>tp25 1896332 1896421 NC_000913.1 11.84 sdaA 1894956-1896320> b1815 1896421-1898049> 166>t37 1902772 1902825 NC_000913.1 8.82 manZ 1901910-1902770> b1820 1902825-1903283> 128>tp29 1903368 1903613 NC_000913.1 10.32 b1820 1902825-1903283> b1821 1903658-1904278> 138>e7 1905163 1905250 NC_000913.1 9.97 yebH 1904275-1905084< cspC 1905250-1905459< 75>tp18 1910602 1910788 NC_000913.1 13.83 htpX 1909719-1910600< prc 1910792-1912840< 86>te5 1918171 1918241 NC_000913.1 12.95 b1834 1915528-1918167> b1835 1918241-1919686> 99>tpke79 1921027 1921308 NC_000913.1 11.82 b1838 1920337-1920996< b1839 1921389-1921730< - sraC,ryeA,ryeB 248>k46 1932701 1932856 NC_000913.1 5.96 edd 1930817-1932628< zwf 1932863-1934338< 175>p18 1938219 1938322 NC_000913.1 8.50 msbB 1937246-1938217< yebA 1938337-1939596< 231>k41 1944003 1944069 NC_000913.1 6.50 ruvA 1943389-1944000< yebB 1944176-1944877> 143>tp30 1975165 1975290 NC_000913.1 9.75 motA 1974276-1975163< flhC 1975290-1975868< 118>te10 1976232 1976427 NC_000913.1 10.96 flhD 1975871-1976230< insB_5 1976542-1977045< 90>tpe40 1994067 1994122 NC_000913.1 12.29 yecF 1993841-1994065> sdiA 1994133-1994855< 120>te11 2111236 2111446 NC_000913.1 10.73 rfbB 2109998-2111083< galF 2111456-2112349< 48>tp11 2151247 2151592 NC_000913.1 15.88 b2073 2150491-2151150< b2074 2151891-2153285> - ryeC,ryeD 129>tpe60 2151623 2151866 NC_000913.1 10.20 b2073 2150491-2151150< b2074 2151891-2153285> - ryeC,ryeD 140>k24 2157702 2157901 NC_000913.1 9.90 b2075 2153285-2156407> b2077 2159486-2160901> 196>t49 2163581 2163689 NC_000913.1 7.51 b2080 2163172-2163543> b2081 2163690-2165051> 8>tpe2 2190331 2190526 NC_000913.1 25.48 yehD 2189700-2190242< yehE 2190535-2190816< T 24>k3 2227055 2227434 NC_000913.1 20.83 yohH 2226569-2226859< yohI 2227458-2228405< T 123>k21 2265733 2265823 NC_000913.1 10.60 yeiQ 2264265-2265731> yeiR 2265849-2266835> 68>t12 2268577 2268649 NC_000913.1 14.11 b2175 2267999-2268565> b2176 2268746-2270302> 67>k7 2280826 2280899 NC_000913.1 14.16 rplY 2280537-2280821> yejK 2280960-2281967< 159>t36 2309559 2309648 NC_000913.1 9.13 yojL 2308499-2309554< ompC 2309666-2310769< 244>p26 2378544 2378742 NC_000913.1 6.12 menF 2377368-2378438< b2266 2378742-2379047< 184>k30 2403505 2403692 NC_000913.1 7.95 nuoA 2402649-2403092< lrhA 2403723-2404661< 78>tp19 2410635 2410697 NC_000913.1 13.64 b2294 2410120-2410632< b2295 2410697-2411152< 69>tpe27 2412694 2412767 NC_000913.1 13.99 ackA 2411490-2412692> pta 2412767-2414911> 167>tp35 2430968 2431032 NC_000913.1 8.74 folC 2429694-2430962< accD 2431032-2431946< 201>e12 2434671 2434735 NC_000913.1 7.49 usg 2433656-2434669< pdxB 2434735-2435871< 168>tp36 2458494 2458669 NC_000913.1 8.71 b2342 2457179-2458489< b2343 2458670-2458978< 275>p32 2465734 2465820 NC_000913.1 5.03 yfdB 2464565-2465722> b2350 2465875-2466237> 92>tpke70 2494649 2495083 NC_000913.1 12.32 b2378 2493599-2494585> b2379 2495077-2496315< C 187>e10 2496317 2496475 NC_000913.1 7.86 b2379 2495077-2496315< b2380 2496691-2498388> 25>tp5 2508908 2509019 NC_000913.1 20.55 b2389 2507650-2508906> b2390 2509021-2509347> T 179>k29 2528198 2528255 NC_000913.1 8.14 lig 2526181-2528196< b2412 2528267-2529253< 65>tpk8 2531402 2531601 NC_000913.1 14.45 cysK 2530429-2531400> ptsH 2531784-2532041> 124>tk11 2618182 2618261 NC_000913.1 10.47 uraA 2616891-2618180< upp 2618266-2618919< 239>tpe92 2635420 2635494 NC_000913.1 6.31 b2511 2633904-2635415< b2512 2635494-2636672< 121>k20 2638654 2638706 NC_000913.1 10.65 hisS 2637321-2638595< gcpE 2638706-2639824< 53>tp14 2651362 2651555 NC_000913.1 15.30 sseA 2650355-2651359> sseB 2652177-2652962< - ryfA 4>tp1 2651802 2652174 NC_000913.1 29.07 sseA 2650355-2651359> sseB 2652177-2652962< C ryfA 29>tke1 2689183 2689394 NC_000913.1 19.53 b2556 2687691-2689181< purL 2689676-2693563< C 112>tpke37 2702135 2702354 NC_000913.1 11.11 rnc 2701403-2702083< llepB 2702355-2703329< T 171>k27 2720642 2720744 NC_000913.1 8.61 b2584 2717973-2720633> pssA 2720744-2722102> 216>t55 2729424 2729617 NC_000913.1 7.00 kgtP 2722468-2723766< clpB 2729620-2732193< 208>tp44 2735517 2735616 NC_000913.1 7.22 yfiA 2735174-2735515> pheL 2735619-2735666> 177>k28 2742137 2742200 NC_000913.1 8.37 yfiB 2741645-2742127> rplS 2742203-2742550< 127>tpke89 2744207 2744455 NC_000913.1 10.34 rpsP 2743957-2744205< ffh 2744454-2745815< T 232>k42 2753976 2754153 NC_000913.1 6.49 smpB 2752917-2753399> intA 2754180-2755421> 261>t71 2809324 2809447 NC_000913.1 5.55 emrR 2808791-2809321> emrA 2809448-2810620> 61>t11 2815884 2816081 NC_000913.1 14.64 b2690 2814959-2815525< csrA 2816983-2817168< 266>tp54 2821794 2821872 NC_000913.1 5.32 recA 2820731-2821792< ygaD 2821872-2822369< 59>p7 2847874 2847982 NC_000913.1 14.84 hycB 2847261-2847872< hycA 2847997-2848458< 161>tpe75 2870845 2871030 NC_000913.1 9.09 b2748 2870532-2870843< ygbE 2871037-2871360< 222>pke3 2922553 2922757 NC_000913.1 6.77 b2792 2921806-2922135< syd 2922757-2923302< 188>e11 2937334 2937389 NC_000913.1 7.83 fucU 2936910-2937332> fucR 2937390-2938121> 52>tpk7 2940603 2940902 NC_000913.1 15.35 gcvA 2939672-2940589< b2809 2940940-2941170< - gcvB 274>t77 2969166 2969275 NC_000913.1 5.05 b2832 2968442-2969155> b2833 2969293-2969511> 223>t59 2974125 2974323 NC_000913.1 6.72 aas 2971877-2974036< galR 2974621-2975652> - sraE,rygA,rygB 155>k26 2995624 2995711 NC_000913.1 9.41 yi21_4 2995257-2995622< b2862 2995711-2996010< 190>k31 3034304 3034383 NC_000913.1 7.74 prfB 3033204-3034302< recJ 3034393-3036126< 202>tpe85 3044127 3044188 NC_000913.1 7.44 ygfF 3043178-3043921< gcvP 3044188-3047061< 131>e5 3048689 3048916 NC_000913.1 10.14 gcvT 3047593-3048687< visC 3049135-3050337< 133>t27 3054820 3055041 NC_000913.1 10.12 ygfA 3054261-3054809> serA 3055198-3056430< - rygC 210>t52 3071713 3071955 NC_000913.1 7.12 epd 3070692-3071711< yggC 3071996-3072709< 148>tpke85 3081830 3081946 NC_000913.1 9.64 speB 3080896-3081816< speA 3081954-3083930< T 63>k6 3087700 3087774 NC_000913.1 14.60 galP 3086303-3087697> sprT 3087774-3088271> 125>tpk16 3107235 3107409 NC_000913.1 10.39 speC 3105038-3107233< b2966 3107570-3108277> 185>tk15 3151442 3151578 NC_000913.1 7.95 metC 3150251-3151438> yghB 3151578-3152237> 119>pke1 3154534 3154753 NC_000913.1 10.95 b3011 3153369-3154532> b3012 3154754-3155464> 160>te14 3161499 3161690 NC_000913.1 9.11 plsC 3160760-3161497< parC 3161731-3163989< 71>k8 3184109 3184203 NC_000913.1 13.91 ygiL 3183430-3183981> yi21_5 3184203-3184568> 35>tp8 3192705 3192958 NC_000913.1 18.34 b3051 3190880-3192541> b3052 3192961-3194394< C rygD 162>p16 3208226 3208422 NC_000913.1 8.91 ygjD 3207171-3208184< rpsU 3208422-3208637> 186>te20 3208645 3208739 NC_000913.1 7.94 rpsU 3208422-3208637> dnaG 3208748-3210493> 1>tpk1 3235948 3236216 NC_000913.1 46.77 ygjR 3234934-3235938> ygjT 3236222-3237187> C sraF 110>k17 3244180 3244277 NC_000913.1 11.21 exuT 3242744-3244162> exuR 3244277-3245068> 235>tp50 3246466 3246594 NC_000913.1 6.36 yqjB 3246079-3246462> yqjC 3246594-3246977> 212>pe14 3255714 3255905 NC_000913.1 7.10 yhaO 3254320-3255597< yhaP 3255928-3256755< 178>p19 3274496 3274568 NC_000913.1 8.20 yhaG 3272923-3274494> sohA 3274643-3274978> 142>tp31 3301012 3301089 NC_000913.1 9.75 yhbV 3300112-3301008> yhbW 3301089-3302096> 271>t75 3303464 3303612 NC_000913.1 5.14 mtr 3302214-3303458< deaD 3303612-3305552< 267>e19 3306567 3306674 NC_000913.1 5.32 yhbM 3305681-3306565< pnp 3306674-3308878< 26>p3 3308880 3309056 NC_000913.1 20.24 pnp 3306674-3308878< rpsO 3309056-3309325< T sraG 106>p11 3309327 3309467 NC_000913.1 11.55 rpsO 3309056-3309325< truB 3309474-3310418< 139>k23 3319609 3319712 NC_000913.1 9.95 yhbX 3317629-3319272< secG 3319814-3320146< 215>te21 3325729 3325880 NC_000913.1 7.02 yhbY 3325431-3325724> greA 3325880-3326341< 36>tk1 3330379 3330503 NC_000913.1 17.89 yhbE 3329411-3330376< rpmA 3330503-3330760< 60>tp16 3344103 3344219 NC_000913.1 14.79 yhbH 3343814-3344101> ptsN 3344219-3344710> 88>t18 3375331 3375450 NC_000913.1 12.63 sspA 3374417-3375055< rpsI 3375450-3375842< 238>k44 3376288 3376499 NC_000913.1 6.34 rplM 3375858-3376286< yhcM 3376505-3377632< 255>pe16 3382141 3382338 NC_000913.1 5.70 mdh 3380965-3381903< argR 3382338-3382808> 97>tk9 3404907 3405012 NC_000913.1 12.00 accC 3403554-3404903> yhdT 3405012-3405254> 31>k4 3436082 3436278 NC_000913.1 19.34 mscL 3435661-3436071> yhdM 3436342-3436767< C 57>tp15 3437153 3437253 NC_000913.1 15.03 yhdN 3436778-3437146< rplQ 3437253-3437636< 34>t8 3440110 3440255 NC_000913.1 18.39 rpsM 3439752-3440108< rpmJ 3440255-3440371< T 28>tp6 3445788 3445951 NC_000913.1 19.62 rplN 3445415-3445786< rpsQ 3445951-3446205< T 108>tpk14 3450909 3451141 NC_000913.1 11.37 rpsJ 3450596-3450907< pinO 3451145-3451564< 37>tpke31 3467732 3467782 NC_000913.1 17.66 yheB 3464797-3467490< tufA 3467782-3468966< T 51>t10 3468968 3469037 NC_000913.1 15.42 tufA 3467782-3468966< fusA 3469037-3471151< 91>t21 3472191 3472315 NC_000913.1 12.28 rpsL 3471815-3472189< yheL 3472315-3472602< T 74>tpk9 3474091 3474242 NC_000913.1 13.84 b3346 3473355-3474089< fkpA 3474244-3475056< 152>t32 3478807 3478926 NC_000913.1 9.47 yheR 3478244-3478798< yheS 3478926-3480839> 84>p8 3494525 3494592 NC_000913.1 13.12 nirD 3494188-3494514> nirC 3494892-3495446> 228>tp48 3516988 3517095 NC_000913.1 6.56 aroK 3516181-3516903< hofQ 3517103-3518341< 170>tp37 3534929 3535122 NC_000913.1 8.68 greB 3534414-3534926> yhgF 3535122-3537344> 213>k40 3577279 3577393 NC_000913.1 7.09 yhhW 3576581-3577276< yhhX 3577399-3578436< 259>tp53 3597348 3597463 NC_000913.1 5.57 livJ 3596186-3597346< rpoH 3597560-3598414< 207>tpe86 3598462 3598659 NC_000913.1 7.30 rpoH 3597560-3598414< ftsX 3598659-3599717< 42>tk2 3604015 3604082 NC_000913.1 16.69 b3468 3603382-3604008> b3469 3604082-3606280> 218>tp46 3679595 3679791 NC_000913.1 6.96 yhjJ 3678074-3679570< dctA 3679791-3681077< 77>k9 3717990 3718256 NC_000913.1 13.73 cspA 3717678-3717890> yi5A 3718309-3718830> 197>tpke122 3719753 3719943 NC_000913.1 7.50 yi5B 3718827-3719678> glyS 3719957-3722026< T 265>p30 3769619 3769908 NC_000913.1 5.37 yibI 3769009-3769371< mtlA 3769908-3771821> 229>tp49 3774748 3774930 NC_000913.1 6.54 yibL 3774292-3774654> lldP 3775026-3776681> 225>t60 3787757 3787945 NC_000913.1 6.68 yibD 3786674-3787708< tdh 3787947-3788972< 47>tp10 3808781 3808877 NC_000913.1 16.00 mutM 3807970-3808779< rpmG 3808877-3809044< 23>t4 3809317 3809514 NC_000913.1 21.27 rpmB 3809065-3809301< radC 3809518-3810192< T 126>te12 3813399 3813490 NC_000913.1 10.37 pyrE 3812754-3813395< rph 3813490-3814176< 230>e15 3844796 3844932 NC_000913.1 6.53 uhpT 3843403-3844794< uhpC 3844932-3846254< 130>tpe62 3850413 3850517 NC_000913.1 10.19 ilvB 3848723-3850411< b3672 3850517-3850615< 247>t63 3864532 3864636 NC_000913.1 5.97 hslS 3864096-3864530< hslT 3864636-3865049< 2>k1 3903244 3903356 NC_000913.1 41.61 bglF 3901348-3903225< bglG 3903359-3904195< T 134>pe9 3924637 3924783 NC_000913.1 10.10 asnC 3924173-3924631< asnA 3924783-3925775> 96>k12 3934798 3934905 NC_000913.1 12.04 rbsB 3933904-3934794> rbsK 3934920-3935849> 145>cc4\_13 3948045 3948184 NC_000913.1 9.68 ilvL 3947945-3948043> ilvG_1 3948183-3949166> T 107>k14 3951043 3951132 NC_000913.1 11.45 ilvE 3950107-3951036> ilvD 3951132-3952949> 174>e9 3980426 3980487 NC_000913.1 8.54 yifK 3978500-3979885> aslB 3980571-3981806> 116>k19 3984055 3984299 NC_000913.1 11.02 aslA 3981965-3983620< hemY 3984299-3985495< - sraJ,ryiA 169>tpke120 3998739 3999038 NC_000913.1 8.69 yigE 3998183-3998668< corA 3999038-3999988> 41>cc4\_14 3999042 3999411 NC_000913.1 16.80 yigE 3998183-3998668< corA 3999038-3999988> T 211>k39 4003412 4003469 NC_000913.1 7.11 pldA 4002473-4003342> recQ 4003469-4005301> 6>tpk2 4048659 4048926 NC_000913.1 26.06 b3865 4047713-4048312< byihI 4048927-4049436> C sraK,ryiB 7>p1 4049438 4049619 NC_000913.1 25.68 yihI 4048927-4049436> hemN 4049619-4050998> T 12>tpk3 4055641 4055987 NC_000913.1 24.68 glnA 4054205-4055614< yihK 4055987-4057762> T 262>p29 4103904 4104049 NC_000913.1 5.54 b3914 4103532-4103900> yiiP 4104049-4104951> 264>te23 4112054 4112146 NC_000913.1 5.38 fpr 4111306-4112052< glpX 4112149-4113159< 66>tp17 4113161 4113246 NC_000913.1 14.22 glpX 4112149-4113159< glpK 4113294-4114802< 154>t33 4117936 4117996 NC_000913.1 9.43 menA 4117003-4117929< hslU 4117996-4119327< 183>t43 4119869 4119960 NC_000913.1 8.05 hslV 4119337-4119867< ftsN 4119960-4120919< 253>pe15 4155889 4156069 NC_000913.1 5.74 argH 4154429-4155802> oxyR 4156069-4156986> 5>t1 4173138 4173252 NC_000913.1 26.36 b3975 4172792-4172947< tufB 4173523-4174707> T 20>tp4 4174709 4174937 NC_000913.1 21.48 tufB 4173523-4174707> secE 4174937-4175320> T 226>tpke123 4175870 4176025 NC_000913.1 6.66 nusG 4175322-4175867> rplK 4176025-4176453> 18>tpk4 4178505 4178773 NC_000913.1 21.77 rplL 4178138-4178503> rpoB 4178823-4182851> T 165>p17 4182853 4182928 NC_000913.1 8.83 rpoB 4178823-4182851> rpoC 4182928-4187151> 76>tpke51 4225092 4225204 NC_000913.1 13.79 metH 4221407-4225090> yjbB 4225310-4226941> 49>tpke51 4225207 4225323 NC_000913.1 15.79 metH 4221407-4225090> yjbB 4225310-4226941> T 241>tk17 4260663 4260827 NC_000913.1 6.20 yjbO 4260209-4260661> qor 4260827-4261810< 221>t57 4277420 4277559 NC_000913.1 6.79 yjcD 4276058-4277407> yjcE 4277559-4279208> 180>tp40 4327822 4328066 NC_000913.1 8.12 yjcZ 4326971-4327816> proP 4328080-4329582> 44>tp9 4339324 4339470 NC_000913.1 16.31 melR 4338298-4339206< melA 4339489-4340844> 43>k5 4353991 4354047 NC_000913.1 16.41 b4130 4352532-4353989< cadA 4354048-4356195< 80>tp20 4362936 4363047 NC_000913.1 13.50 cutA 4362596-4362934< dcuA 4363050-4364351< 58>tke3 4370252 4370353 NC_000913.1 14.91 mopA 4368603-4370249> b4144 4370354-4370740> 156>p15 4381201 4381350 NC_000913.1 9.38 yjeA 4380191-4381198> yjeM 4381375-4382919> 104>te8 4401885 4401964 NC_000913.1 11.59 hflC 4400878-4401882> b4176 4401964-4402161> 13>p2 4403566 4403762 NC_000913.1 24.15 purA 4402265-4403563> yjeB 4403768-4404193> T 89>t19 4407596 4407711 NC_000913.1 12.50 yjfH 4406853-4407584> yjfI 4407711-4408112> 257>p28 4421969 4422094 NC_000913.1 5.58 b4198 4421278-4421964> yjfY 4422094-4422369< 40>e1 4437372 4437446 NC_000913.1 16.84 ytfK 4437125-4437370> ytfL 4437449-4438792< 157>t34 4465014 4465198 NC_000913.1 9.32 treR 4463873-4464820< mgtA 4465199-4467895> 32>t7 4525553 4525678 NC_000913.1 19.11 yjhL 4525117-4525548< yjhM 4525679-4526485< T 33>tpke10 4531359 4531855 NC_000913.1 18.64 yjhQ 4530807-4531352< yjhR 4532583-4533599> T 27>tpke10 4531556 4531865 NC_000913.1 19.66 yjhQ 4530807-4531352< yjhR 4532583-4533599> T 17>tpe4 4555866 4555922 NC_000913.1 22.29 yjiE 4554947-4555858< iadA 4555923-4557095< T 105>pe4 4566122 4566376 NC_000913.1 11.58 yjiO 4564856-4566088< yjiP 4566567-4566878> 70>t13 4608582 4608667 NC_000913.1 13.98 prfC 4606983-4608572> osmY 4608965-4609570> 176>tpe80 4609572 4609980 NC_000913.1 8.46 osmY 4608965-4609570> yjjU 4609980-4611053>